Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1249 and GFF1250 are separated by 31 nucleotides GFF1250 and GFF1251 overlap by 1 nucleotides GFF1251 and GFF1252 are separated by 13 nucleotides GFF1252 and GFF1253 are separated by 10 nucleotides
GFF1249 - hypothetical protein, at 568,451 to 568,588
GFF1249
GFF1250 - Alkanesulfonate ABC transporter substrate-binding protein SsuA, at 568,620 to 569,576
GFF1250
GFF1251 - FMNH2-dependent alkanesulfonate monooxygenase (EC 1.14.14.5), at 569,576 to 570,745
GFF1251
GFF1252 - Alkanesulfonate ABC transporter permease protein SsuC, at 570,759 to 571,604
GFF1252
GFF1253 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 571,615 to 572,589
GFF1253
Position (kb) 569
570
571 Strain fitness (log2 ratio) -2
-1
0
1 at 568.746 kb on + strand, within GFF1250 at 568.746 kb on + strand, within GFF1250 at 568.747 kb on - strand, within GFF1250 at 568.935 kb on + strand, within GFF1250 at 568.936 kb on - strand, within GFF1250 at 568.936 kb on - strand, within GFF1250 at 569.051 kb on + strand, within GFF1250 at 569.061 kb on + strand, within GFF1250 at 569.061 kb on + strand, within GFF1250 at 569.061 kb on + strand, within GFF1250 at 569.061 kb on + strand, within GFF1250 at 569.121 kb on + strand, within GFF1250 at 569.269 kb on - strand, within GFF1250 at 569.269 kb on - strand, within GFF1250 at 569.271 kb on + strand, within GFF1250 at 569.272 kb on - strand, within GFF1250 at 569.272 kb on - strand, within GFF1250 at 569.272 kb on - strand, within GFF1250 at 569.272 kb on - strand, within GFF1250 at 569.272 kb on - strand, within GFF1250 at 569.289 kb on + strand, within GFF1250 at 569.289 kb on + strand, within GFF1250 at 569.290 kb on - strand, within GFF1250 at 569.618 kb on + strand at 569.660 kb on + strand at 569.661 kb on - strand at 569.661 kb on - strand at 569.661 kb on - strand at 569.700 kb on - strand, within GFF1251 at 569.934 kb on - strand, within GFF1251 at 569.934 kb on - strand, within GFF1251 at 569.955 kb on - strand, within GFF1251 at 570.029 kb on + strand, within GFF1251 at 570.071 kb on + strand, within GFF1251 at 570.093 kb on - strand, within GFF1251 at 570.161 kb on + strand, within GFF1251 at 570.162 kb on - strand, within GFF1251 at 570.474 kb on + strand, within GFF1251 at 570.474 kb on + strand, within GFF1251 at 570.608 kb on + strand, within GFF1251 at 570.772 kb on + strand at 570.772 kb on + strand at 570.773 kb on - strand at 570.950 kb on + strand, within GFF1252 at 571.236 kb on + strand, within GFF1252 at 571.236 kb on + strand, within GFF1252 at 571.237 kb on - strand, within GFF1252 at 571.509 kb on + strand, within GFF1252 at 571.510 kb on - strand, within GFF1252
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 568,746 + GFF1250 0.13 +1.4 568,746 + GFF1250 0.13 -2.7 568,747 - GFF1250 0.13 -1.0 568,935 + GFF1250 0.33 -1.5 568,936 - GFF1250 0.33 -0.2 568,936 - GFF1250 0.33 -1.2 569,051 + GFF1250 0.45 -0.3 569,061 + GFF1250 0.46 -0.8 569,061 + GFF1250 0.46 -0.4 569,061 + GFF1250 0.46 -0.6 569,061 + GFF1250 0.46 +1.4 569,121 + GFF1250 0.52 +0.0 569,269 - GFF1250 0.68 -0.8 569,269 - GFF1250 0.68 -0.5 569,271 + GFF1250 0.68 -0.2 569,272 - GFF1250 0.68 -0.1 569,272 - GFF1250 0.68 +0.4 569,272 - GFF1250 0.68 -1.9 569,272 - GFF1250 0.68 -0.6 569,272 - GFF1250 0.68 +0.2 569,289 + GFF1250 0.70 +0.2 569,289 + GFF1250 0.70 -0.1 569,290 - GFF1250 0.70 -0.5 569,618 + -0.0 569,660 + -0.5 569,661 - -0.3 569,661 - -0.8 569,661 - +0.4 569,700 - GFF1251 0.11 -0.1 569,934 - GFF1251 0.31 +0.1 569,934 - GFF1251 0.31 -1.3 569,955 - GFF1251 0.32 -1.2 570,029 + GFF1251 0.39 -0.2 570,071 + GFF1251 0.42 -0.5 570,093 - GFF1251 0.44 -0.5 570,161 + GFF1251 0.50 -0.2 570,162 - GFF1251 0.50 +0.6 570,474 + GFF1251 0.77 +0.2 570,474 + GFF1251 0.77 -0.6 570,608 + GFF1251 0.88 -0.1 570,772 + -1.5 570,772 + +0.2 570,773 - +0.5 570,950 + GFF1252 0.23 +0.4 571,236 + GFF1252 0.56 +0.3 571,236 + GFF1252 0.56 -0.9 571,237 - GFF1252 0.57 +0.6 571,509 + GFF1252 0.89 -0.4 571,510 - GFF1252 0.89 -1.0
Or see this region's nucleotide sequence