Strain Fitness in Variovorax sp. SCN45 around GFF1248

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1247 and GFF1248 are separated by 127 nucleotidesGFF1248 and GFF1249 are separated by 123 nucleotidesGFF1249 and GFF1250 are separated by 31 nucleotides GFF1247 - Sulfate and thiosulfate binding protein CysP, at 566,575 to 567,615 GFF1247 GFF1248 - FMN reductase (NADPH) (EC 1.5.1.38), at 567,743 to 568,327 GFF1248 GFF1249 - hypothetical protein, at 568,451 to 568,588 GFF1249 GFF1250 - Alkanesulfonate ABC transporter substrate-binding protein SsuA, at 568,620 to 569,576 GFF1250 Position (kb) 567 568 569Strain fitness (log2 ratio) -2 -1 0 1 2at 566.752 kb on + strand, within GFF1247at 566.752 kb on + strand, within GFF1247at 566.753 kb on - strand, within GFF1247at 566.753 kb on - strand, within GFF1247at 566.753 kb on - strand, within GFF1247at 566.753 kb on - strand, within GFF1247at 566.953 kb on + strand, within GFF1247at 566.953 kb on + strand, within GFF1247at 566.953 kb on + strand, within GFF1247at 566.953 kb on + strand, within GFF1247at 566.954 kb on - strand, within GFF1247at 566.954 kb on - strand, within GFF1247at 566.954 kb on - strand, within GFF1247at 567.085 kb on + strand, within GFF1247at 567.085 kb on + strand, within GFF1247at 567.085 kb on + strand, within GFF1247at 567.085 kb on + strand, within GFF1247at 567.085 kb on + strand, within GFF1247at 567.085 kb on + strand, within GFF1247at 567.086 kb on - strand, within GFF1247at 567.086 kb on - strand, within GFF1247at 567.118 kb on + strand, within GFF1247at 567.118 kb on + strand, within GFF1247at 567.145 kb on + strand, within GFF1247at 567.145 kb on + strand, within GFF1247at 567.145 kb on + strand, within GFF1247at 567.145 kb on + strand, within GFF1247at 567.145 kb on + strand, within GFF1247at 567.145 kb on + strand, within GFF1247at 567.146 kb on - strand, within GFF1247at 567.146 kb on - strand, within GFF1247at 567.146 kb on - strand, within GFF1247at 567.146 kb on - strand, within GFF1247at 567.146 kb on - strand, within GFF1247at 567.146 kb on - strand, within GFF1247at 567.375 kb on + strand, within GFF1247at 567.397 kb on + strand, within GFF1247at 567.397 kb on + strand, within GFF1247at 567.397 kb on + strand, within GFF1247at 567.398 kb on - strand, within GFF1247at 567.398 kb on - strand, within GFF1247at 567.398 kb on - strand, within GFF1247at 567.406 kb on + strand, within GFF1247at 567.406 kb on + strand, within GFF1247at 567.406 kb on + strand, within GFF1247at 567.406 kb on + strand, within GFF1247at 567.406 kb on + strand, within GFF1247at 567.407 kb on - strand, within GFF1247at 567.407 kb on - strand, within GFF1247at 567.407 kb on - strand, within GFF1247at 567.407 kb on - strand, within GFF1247at 567.407 kb on - strand, within GFF1247at 567.412 kb on + strand, within GFF1247at 567.412 kb on + strand, within GFF1247at 567.412 kb on + strand, within GFF1247at 567.413 kb on - strand, within GFF1247at 567.413 kb on - strand, within GFF1247at 567.452 kb on - strand, within GFF1247at 567.452 kb on - strand, within GFF1247at 567.484 kb on + strand, within GFF1247at 567.484 kb on + strand, within GFF1247at 567.485 kb on - strand, within GFF1247at 567.485 kb on - strand, within GFF1247at 567.485 kb on - strand, within GFF1247at 567.595 kb on + strandat 567.595 kb on + strandat 567.596 kb on - strandat 567.596 kb on - strandat 567.971 kb on + strand, within GFF1248at 567.971 kb on + strand, within GFF1248at 567.971 kb on + strand, within GFF1248at 567.972 kb on - strand, within GFF1248at 567.972 kb on - strand, within GFF1248at 567.972 kb on - strand, within GFF1248at 567.983 kb on + strand, within GFF1248at 567.983 kb on + strand, within GFF1248at 567.983 kb on + strand, within GFF1248at 567.984 kb on - strand, within GFF1248at 568.098 kb on - strand, within GFF1248at 568.098 kb on - strand, within GFF1248at 568.154 kb on + strand, within GFF1248at 568.154 kb on + strand, within GFF1248at 568.155 kb on - strand, within GFF1248at 568.155 kb on - strand, within GFF1248at 568.155 kb on - strand, within GFF1248at 568.155 kb on - strand, within GFF1248at 568.155 kb on - strand, within GFF1248at 568.155 kb on - strand, within GFF1248at 568.155 kb on - strand, within GFF1248at 568.155 kb on - strand, within GFF1248at 568.155 kb on - strand, within GFF1248at 568.155 kb on - strand, within GFF1248at 568.196 kb on + strand, within GFF1248at 568.196 kb on + strand, within GFF1248at 568.318 kb on + strandat 568.318 kb on + strandat 568.319 kb on - strandat 568.319 kb on - strandat 568.319 kb on - strandat 568.319 kb on - strandat 568.746 kb on + strand, within GFF1250at 568.746 kb on + strand, within GFF1250at 568.747 kb on - strand, within GFF1250at 568.935 kb on + strand, within GFF1250at 568.936 kb on - strand, within GFF1250at 568.936 kb on - strand, within GFF1250at 569.051 kb on + strand, within GFF1250at 569.061 kb on + strand, within GFF1250at 569.061 kb on + strand, within GFF1250at 569.061 kb on + strand, within GFF1250at 569.061 kb on + strand, within GFF1250at 569.121 kb on + strand, within GFF1250at 569.269 kb on - strand, within GFF1250at 569.269 kb on - strand, within GFF1250at 569.271 kb on + strand, within GFF1250at 569.272 kb on - strand, within GFF1250at 569.272 kb on - strand, within GFF1250at 569.272 kb on - strand, within GFF1250at 569.272 kb on - strand, within GFF1250at 569.272 kb on - strand, within GFF1250at 569.289 kb on + strand, within GFF1250at 569.289 kb on + strand, within GFF1250at 569.290 kb on - strand, within GFF1250

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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566,752 + GFF1247 0.17 +1.6
566,752 + GFF1247 0.17 -0.6
566,753 - GFF1247 0.17 +0.4
566,753 - GFF1247 0.17 +0.6
566,753 - GFF1247 0.17 -1.0
566,753 - GFF1247 0.17 +1.6
566,953 + GFF1247 0.36 -0.6
566,953 + GFF1247 0.36 -0.4
566,953 + GFF1247 0.36 -0.1
566,953 + GFF1247 0.36 -0.3
566,954 - GFF1247 0.36 +0.0
566,954 - GFF1247 0.36 -0.9
566,954 - GFF1247 0.36 +0.0
567,085 + GFF1247 0.49 -1.2
567,085 + GFF1247 0.49 +0.7
567,085 + GFF1247 0.49 +1.8
567,085 + GFF1247 0.49 -0.1
567,085 + GFF1247 0.49 -2.2
567,085 + GFF1247 0.49 +0.0
567,086 - GFF1247 0.49 +0.2
567,086 - GFF1247 0.49 +1.4
567,118 + GFF1247 0.52 +0.1
567,118 + GFF1247 0.52 -0.5
567,145 + GFF1247 0.55 -1.2
567,145 + GFF1247 0.55 -0.2
567,145 + GFF1247 0.55 -0.5
567,145 + GFF1247 0.55 -0.4
567,145 + GFF1247 0.55 -0.0
567,145 + GFF1247 0.55 -0.5
567,146 - GFF1247 0.55 +0.4
567,146 - GFF1247 0.55 +0.0
567,146 - GFF1247 0.55 -0.4
567,146 - GFF1247 0.55 +0.0
567,146 - GFF1247 0.55 -0.3
567,146 - GFF1247 0.55 -0.4
567,375 + GFF1247 0.77 -0.3
567,397 + GFF1247 0.79 -1.7
567,397 + GFF1247 0.79 -0.8
567,397 + GFF1247 0.79 +1.4
567,398 - GFF1247 0.79 -0.3
567,398 - GFF1247 0.79 +1.2
567,398 - GFF1247 0.79 -0.1
567,406 + GFF1247 0.80 -0.6
567,406 + GFF1247 0.80 +0.3
567,406 + GFF1247 0.80 -0.8
567,406 + GFF1247 0.80 +0.9
567,406 + GFF1247 0.80 -1.5
567,407 - GFF1247 0.80 -1.0
567,407 - GFF1247 0.80 +0.2
567,407 - GFF1247 0.80 +0.8
567,407 - GFF1247 0.80 -0.1
567,407 - GFF1247 0.80 +0.2
567,412 + GFF1247 0.80 -0.0
567,412 + GFF1247 0.80 +0.2
567,412 + GFF1247 0.80 -0.1
567,413 - GFF1247 0.80 -0.6
567,413 - GFF1247 0.80 +0.1
567,452 - GFF1247 0.84 -1.0
567,452 - GFF1247 0.84 -0.5
567,484 + GFF1247 0.87 -0.1
567,484 + GFF1247 0.87 -0.6
567,485 - GFF1247 0.87 -0.3
567,485 - GFF1247 0.87 -0.4
567,485 - GFF1247 0.87 -0.3
567,595 + +0.9
567,595 + -0.1
567,596 - +0.2
567,596 - -1.1
567,971 + GFF1248 0.39 -1.1
567,971 + GFF1248 0.39 -0.5
567,971 + GFF1248 0.39 +0.0
567,972 - GFF1248 0.39 +1.9
567,972 - GFF1248 0.39 -1.1
567,972 - GFF1248 0.39 -0.1
567,983 + GFF1248 0.41 -0.4
567,983 + GFF1248 0.41 -0.3
567,983 + GFF1248 0.41 +0.1
567,984 - GFF1248 0.41 +0.4
568,098 - GFF1248 0.61 -0.4
568,098 - GFF1248 0.61 -0.4
568,154 + GFF1248 0.70 -0.8
568,154 + GFF1248 0.70 +0.6
568,155 - GFF1248 0.70 -1.0
568,155 - GFF1248 0.70 +0.4
568,155 - GFF1248 0.70 +0.2
568,155 - GFF1248 0.70 +0.1
568,155 - GFF1248 0.70 +1.4
568,155 - GFF1248 0.70 -0.2
568,155 - GFF1248 0.70 +0.6
568,155 - GFF1248 0.70 +0.6
568,155 - GFF1248 0.70 +0.5
568,155 - GFF1248 0.70 -0.6
568,196 + GFF1248 0.77 +0.1
568,196 + GFF1248 0.77 -0.1
568,318 + -1.8
568,318 + -0.2
568,319 - -0.3
568,319 - +0.2
568,319 - -1.2
568,319 - -0.3
568,746 + GFF1250 0.13 +1.4
568,746 + GFF1250 0.13 -2.7
568,747 - GFF1250 0.13 -1.0
568,935 + GFF1250 0.33 -1.5
568,936 - GFF1250 0.33 -0.2
568,936 - GFF1250 0.33 -1.2
569,051 + GFF1250 0.45 -0.3
569,061 + GFF1250 0.46 -0.8
569,061 + GFF1250 0.46 -0.4
569,061 + GFF1250 0.46 -0.6
569,061 + GFF1250 0.46 +1.4
569,121 + GFF1250 0.52 +0.0
569,269 - GFF1250 0.68 -0.8
569,269 - GFF1250 0.68 -0.5
569,271 + GFF1250 0.68 -0.2
569,272 - GFF1250 0.68 -0.1
569,272 - GFF1250 0.68 +0.4
569,272 - GFF1250 0.68 -1.9
569,272 - GFF1250 0.68 -0.6
569,272 - GFF1250 0.68 +0.2
569,289 + GFF1250 0.70 +0.2
569,289 + GFF1250 0.70 -0.1
569,290 - GFF1250 0.70 -0.5

Or see this region's nucleotide sequence