Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1230 and GFF1231 are separated by 43 nucleotides GFF1231 and GFF1232 are separated by 34 nucleotides GFF1232 and GFF1233 are separated by 31 nucleotides GFF1233 and GFF1234 overlap by 4 nucleotides
GFF1230 - Malic enzyme, at 550,450 to 551,670
GFF1230
GFF1231 - FOG: WD40-like repeat, at 551,714 to 552,379
GFF1231
GFF1232 - Uncharacterized protein conserved in bacteria, at 552,414 to 553,199
GFF1232
GFF1233 - Arginine/ornithine antiporter ArcD, at 553,231 to 553,875
GFF1233
GFF1234 - Peptide-methionine (S)-S-oxide reductase MsrA (EC 1.8.4.11), at 553,872 to 554,573
GFF1234
Position (kb) 552
553
554 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 551.642 kb on + strand at 551.642 kb on + strand at 551.642 kb on + strand at 551.643 kb on - strand at 551.643 kb on - strand at 551.661 kb on + strand at 551.662 kb on - strand at 551.668 kb on + strand at 551.668 kb on + strand at 551.669 kb on - strand at 551.669 kb on - strand at 551.669 kb on - strand at 551.768 kb on + strand at 551.939 kb on + strand, within GFF1231 at 551.939 kb on + strand, within GFF1231 at 551.940 kb on - strand, within GFF1231 at 552.315 kb on - strand at 552.429 kb on - strand at 552.588 kb on + strand, within GFF1232 at 552.588 kb on + strand, within GFF1232 at 552.589 kb on - strand, within GFF1232 at 552.589 kb on - strand, within GFF1232 at 552.589 kb on - strand, within GFF1232 at 552.589 kb on - strand, within GFF1232 at 552.711 kb on + strand, within GFF1232 at 552.711 kb on + strand, within GFF1232 at 552.711 kb on + strand, within GFF1232 at 552.712 kb on - strand, within GFF1232 at 552.712 kb on - strand, within GFF1232 at 552.712 kb on - strand, within GFF1232 at 552.712 kb on - strand, within GFF1232 at 552.712 kb on - strand, within GFF1232 at 552.712 kb on - strand, within GFF1232 at 552.712 kb on - strand, within GFF1232 at 552.712 kb on - strand, within GFF1232 at 552.725 kb on + strand, within GFF1232 at 552.924 kb on + strand, within GFF1232 at 552.925 kb on - strand, within GFF1232 at 552.925 kb on - strand, within GFF1232 at 552.925 kb on - strand, within GFF1232 at 552.925 kb on - strand, within GFF1232 at 552.925 kb on - strand, within GFF1232 at 552.925 kb on - strand, within GFF1232 at 552.981 kb on + strand, within GFF1232 at 552.981 kb on + strand, within GFF1232 at 552.981 kb on + strand, within GFF1232 at 552.982 kb on - strand, within GFF1232 at 552.982 kb on - strand, within GFF1232 at 553.010 kb on + strand, within GFF1232 at 553.010 kb on + strand, within GFF1232 at 553.010 kb on + strand, within GFF1232 at 553.010 kb on + strand, within GFF1232 at 553.010 kb on + strand, within GFF1232 at 553.010 kb on + strand, within GFF1232 at 553.011 kb on - strand, within GFF1232 at 553.011 kb on - strand, within GFF1232 at 553.011 kb on - strand, within GFF1232 at 553.014 kb on + strand, within GFF1232 at 553.014 kb on + strand, within GFF1232 at 553.014 kb on + strand, within GFF1232 at 553.014 kb on + strand, within GFF1232 at 553.014 kb on + strand, within GFF1232 at 553.014 kb on + strand, within GFF1232 at 553.015 kb on - strand, within GFF1232 at 553.056 kb on + strand, within GFF1232 at 553.057 kb on - strand, within GFF1232 at 553.380 kb on - strand, within GFF1233 at 553.915 kb on + strand at 553.915 kb on + strand at 553.916 kb on - strand at 553.916 kb on - strand at 553.916 kb on - strand at 553.916 kb on - strand at 553.916 kb on - strand at 553.975 kb on + strand, within GFF1234 at 553.976 kb on - strand, within GFF1234 at 553.976 kb on - strand, within GFF1234 at 554.002 kb on + strand, within GFF1234 at 554.003 kb on - strand, within GFF1234 at 554.003 kb on - strand, within GFF1234 at 554.003 kb on - strand, within GFF1234 at 554.015 kb on - strand, within GFF1234 at 554.075 kb on - strand, within GFF1234 at 554.075 kb on - strand, within GFF1234 at 554.104 kb on + strand, within GFF1234 at 554.104 kb on + strand, within GFF1234 at 554.104 kb on + strand, within GFF1234 at 554.105 kb on - strand, within GFF1234 at 554.105 kb on - strand, within GFF1234 at 554.105 kb on - strand, within GFF1234 at 554.105 kb on - strand, within GFF1234 at 554.105 kb on - strand, within GFF1234 at 554.158 kb on + strand, within GFF1234 at 554.158 kb on + strand, within GFF1234
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 551,642 + +0.0 551,642 + -0.0 551,642 + +0.9 551,643 - -0.3 551,643 - +0.0 551,661 + +0.1 551,662 - -1.2 551,668 + -0.9 551,668 + -0.2 551,669 - +0.4 551,669 - +0.7 551,669 - +0.3 551,768 + -1.3 551,939 + GFF1231 0.34 +0.4 551,939 + GFF1231 0.34 -1.8 551,940 - GFF1231 0.34 -1.7 552,315 - -0.6 552,429 - -0.1 552,588 + GFF1232 0.22 +1.4 552,588 + GFF1232 0.22 +0.3 552,589 - GFF1232 0.22 -0.1 552,589 - GFF1232 0.22 +0.2 552,589 - GFF1232 0.22 +0.0 552,589 - GFF1232 0.22 +0.6 552,711 + GFF1232 0.38 +0.7 552,711 + GFF1232 0.38 -0.2 552,711 + GFF1232 0.38 +0.7 552,712 - GFF1232 0.38 +0.0 552,712 - GFF1232 0.38 +0.6 552,712 - GFF1232 0.38 +0.5 552,712 - GFF1232 0.38 -1.4 552,712 - GFF1232 0.38 -0.9 552,712 - GFF1232 0.38 -0.8 552,712 - GFF1232 0.38 +0.0 552,712 - GFF1232 0.38 -0.2 552,725 + GFF1232 0.40 -1.2 552,924 + GFF1232 0.65 -0.2 552,925 - GFF1232 0.65 -0.2 552,925 - GFF1232 0.65 -0.5 552,925 - GFF1232 0.65 +0.9 552,925 - GFF1232 0.65 -0.2 552,925 - GFF1232 0.65 +0.8 552,925 - GFF1232 0.65 +0.7 552,981 + GFF1232 0.72 +3.4 552,981 + GFF1232 0.72 -0.4 552,981 + GFF1232 0.72 -0.2 552,982 - GFF1232 0.72 -0.1 552,982 - GFF1232 0.72 -0.0 553,010 + GFF1232 0.76 +0.0 553,010 + GFF1232 0.76 -1.1 553,010 + GFF1232 0.76 -0.3 553,010 + GFF1232 0.76 +1.0 553,010 + GFF1232 0.76 -0.0 553,010 + GFF1232 0.76 +0.0 553,011 - GFF1232 0.76 +0.3 553,011 - GFF1232 0.76 -0.6 553,011 - GFF1232 0.76 -0.2 553,014 + GFF1232 0.76 +0.6 553,014 + GFF1232 0.76 +1.4 553,014 + GFF1232 0.76 -0.6 553,014 + GFF1232 0.76 +0.0 553,014 + GFF1232 0.76 -1.0 553,014 + GFF1232 0.76 +1.0 553,015 - GFF1232 0.76 -0.0 553,056 + GFF1232 0.82 +1.4 553,057 - GFF1232 0.82 +0.3 553,380 - GFF1233 0.23 +0.8 553,915 + -1.0 553,915 + -0.3 553,916 - -0.4 553,916 - -0.2 553,916 - -2.3 553,916 - -0.2 553,916 - -0.3 553,975 + GFF1234 0.15 -0.1 553,976 - GFF1234 0.15 +0.8 553,976 - GFF1234 0.15 -0.4 554,002 + GFF1234 0.19 -0.4 554,003 - GFF1234 0.19 -0.6 554,003 - GFF1234 0.19 -0.2 554,003 - GFF1234 0.19 +0.6 554,015 - GFF1234 0.20 -0.2 554,075 - GFF1234 0.29 +0.0 554,075 - GFF1234 0.29 -0.3 554,104 + GFF1234 0.33 -0.5 554,104 + GFF1234 0.33 -0.0 554,104 + GFF1234 0.33 -0.4 554,105 - GFF1234 0.33 -1.2 554,105 - GFF1234 0.33 -0.1 554,105 - GFF1234 0.33 -0.1 554,105 - GFF1234 0.33 +0.8 554,105 - GFF1234 0.33 -0.8 554,158 + GFF1234 0.41 +0.4 554,158 + GFF1234 0.41 -0.9
Or see this region's nucleotide sequence