Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1215 and GFF1216 are separated by 35 nucleotides GFF1216 and GFF1217 overlap by 4 nucleotides
GFF1215 - Oligopeptide transport ATP-binding protein @ Glutathione ABC transporter, ATP-binding protein GsiA, at 534,258 to 536,135
GFF1215
GFF1216 - Isoaspartyl aminopeptidase (EC 3.4.19.5) @ Asp-X dipeptidase, at 536,171 to 537,142
GFF1216
GFF1217 - Transcriptional regulator RpiR in protein degradation cluster, at 537,139 to 538,140
GFF1217
Position (kb) 536
537
538 Strain fitness (log2 ratio) -1
0
1 at 535.342 kb on + strand, within GFF1215 at 535.343 kb on - strand, within GFF1215 at 535.343 kb on - strand, within GFF1215 at 535.405 kb on + strand, within GFF1215 at 535.405 kb on + strand, within GFF1215 at 535.405 kb on + strand, within GFF1215 at 536.223 kb on + strand at 536.223 kb on + strand at 536.223 kb on + strand at 536.223 kb on + strand at 536.223 kb on + strand at 536.223 kb on + strand at 536.223 kb on + strand at 536.224 kb on - strand at 536.224 kb on - strand at 536.224 kb on - strand at 536.224 kb on - strand at 536.383 kb on - strand, within GFF1216 at 536.383 kb on - strand, within GFF1216 at 536.454 kb on + strand, within GFF1216 at 536.454 kb on + strand, within GFF1216 at 536.455 kb on - strand, within GFF1216 at 536.455 kb on - strand, within GFF1216 at 536.455 kb on - strand, within GFF1216 at 536.825 kb on + strand, within GFF1216 at 536.825 kb on + strand, within GFF1216 at 536.825 kb on + strand, within GFF1216 at 536.825 kb on + strand, within GFF1216 at 536.825 kb on + strand, within GFF1216 at 536.826 kb on - strand, within GFF1216 at 536.826 kb on - strand, within GFF1216 at 536.826 kb on - strand, within GFF1216 at 536.826 kb on - strand, within GFF1216 at 536.826 kb on - strand, within GFF1216 at 537.051 kb on + strand at 537.052 kb on - strand at 537.052 kb on - strand at 537.052 kb on - strand at 537.231 kb on + strand at 537.231 kb on + strand at 537.231 kb on + strand at 537.231 kb on + strand at 537.231 kb on + strand at 537.231 kb on + strand at 537.232 kb on - strand at 537.232 kb on - strand at 537.232 kb on - strand at 537.232 kb on - strand at 537.401 kb on + strand, within GFF1217 at 537.401 kb on + strand, within GFF1217 at 537.402 kb on - strand, within GFF1217 at 537.537 kb on - strand, within GFF1217 at 537.710 kb on + strand, within GFF1217 at 537.710 kb on + strand, within GFF1217 at 537.710 kb on + strand, within GFF1217 at 537.710 kb on + strand, within GFF1217 at 537.711 kb on - strand, within GFF1217 at 537.711 kb on - strand, within GFF1217 at 537.761 kb on + strand, within GFF1217 at 537.761 kb on + strand, within GFF1217 at 537.761 kb on + strand, within GFF1217 at 537.762 kb on - strand, within GFF1217 at 537.762 kb on - strand, within GFF1217 at 537.927 kb on - strand, within GFF1217 at 537.927 kb on - strand, within GFF1217 at 538.043 kb on + strand at 538.043 kb on + strand at 538.043 kb on + strand at 538.043 kb on + strand at 538.044 kb on - strand at 538.044 kb on - strand at 538.044 kb on - strand at 538.044 kb on - strand at 538.044 kb on - strand at 538.044 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 535,342 + GFF1215 0.58 +0.6 535,343 - GFF1215 0.58 -1.0 535,343 - GFF1215 0.58 -0.9 535,405 + GFF1215 0.61 -0.1 535,405 + GFF1215 0.61 +0.5 535,405 + GFF1215 0.61 -1.1 536,223 + -0.6 536,223 + -0.2 536,223 + -1.0 536,223 + -0.9 536,223 + -1.2 536,223 + +0.8 536,223 + -0.2 536,224 - +0.3 536,224 - -0.3 536,224 - +0.3 536,224 - +0.4 536,383 - GFF1216 0.22 +0.1 536,383 - GFF1216 0.22 +0.0 536,454 + GFF1216 0.29 -0.2 536,454 + GFF1216 0.29 -0.5 536,455 - GFF1216 0.29 -0.2 536,455 - GFF1216 0.29 +0.4 536,455 - GFF1216 0.29 +0.9 536,825 + GFF1216 0.67 +0.3 536,825 + GFF1216 0.67 -1.4 536,825 + GFF1216 0.67 +0.2 536,825 + GFF1216 0.67 +0.7 536,825 + GFF1216 0.67 -0.1 536,826 - GFF1216 0.67 +0.5 536,826 - GFF1216 0.67 +0.7 536,826 - GFF1216 0.67 -0.2 536,826 - GFF1216 0.67 -0.2 536,826 - GFF1216 0.67 -0.3 537,051 + +0.0 537,052 - -1.4 537,052 - +0.9 537,052 - +0.0 537,231 + +0.9 537,231 + +0.1 537,231 + +0.0 537,231 + +0.4 537,231 + -1.1 537,231 + -0.0 537,232 - -0.7 537,232 - -0.1 537,232 - +0.1 537,232 - +0.8 537,401 + GFF1217 0.26 -0.3 537,401 + GFF1217 0.26 -0.7 537,402 - GFF1217 0.26 +0.1 537,537 - GFF1217 0.40 -0.6 537,710 + GFF1217 0.57 +0.2 537,710 + GFF1217 0.57 -0.4 537,710 + GFF1217 0.57 -0.4 537,710 + GFF1217 0.57 -0.2 537,711 - GFF1217 0.57 +0.2 537,711 - GFF1217 0.57 -0.6 537,761 + GFF1217 0.62 -0.0 537,761 + GFF1217 0.62 -0.2 537,761 + GFF1217 0.62 -0.3 537,762 - GFF1217 0.62 -0.6 537,762 - GFF1217 0.62 -0.5 537,927 - GFF1217 0.79 +0.3 537,927 - GFF1217 0.79 +0.2 538,043 + +0.0 538,043 + -0.6 538,043 + -1.2 538,043 + -0.5 538,044 - +0.0 538,044 - +0.1 538,044 - -0.3 538,044 - -1.0 538,044 - -1.0 538,044 - -0.2
Or see this region's nucleotide sequence