Strain Fitness in Variovorax sp. SCN45 around GFF1199

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1197 and GFF1198 overlap by 14 nucleotidesGFF1198 and GFF1199 are separated by 85 nucleotidesGFF1199 and GFF1200 overlap by 4 nucleotides GFF1197 - Transcriptional regulator, LysR family, at 515,664 to 516,599 GFF1197 GFF1198 - no description, at 516,586 to 517,332 GFF1198 GFF1199 - Uncharacterized protein similar to glutamate-1-semialdehyde aminotransferase, at 517,418 to 518,728 GFF1199 GFF1200 - Thioredoxin reductase (EC 1.8.1.9), at 518,725 to 519,744 GFF1200 Position (kb) 517 518 519Strain fitness (log2 ratio) -2 -1 0 1 2at 516.588 kb on - strandat 516.640 kb on + strandat 516.640 kb on + strandat 516.640 kb on + strandat 516.640 kb on + strandat 516.640 kb on + strandat 516.640 kb on + strandat 516.641 kb on - strandat 516.641 kb on - strandat 516.641 kb on - strandat 516.641 kb on - strandat 516.641 kb on - strandat 516.641 kb on - strandat 516.641 kb on - strandat 516.641 kb on - strandat 516.641 kb on - strandat 516.641 kb on - strandat 516.872 kb on + strand, within GFF1198at 516.872 kb on + strand, within GFF1198at 516.872 kb on + strand, within GFF1198at 516.872 kb on + strand, within GFF1198at 516.872 kb on + strand, within GFF1198at 516.872 kb on + strand, within GFF1198at 516.872 kb on + strand, within GFF1198at 516.873 kb on - strand, within GFF1198at 516.873 kb on - strand, within GFF1198at 516.873 kb on - strand, within GFF1198at 516.873 kb on - strand, within GFF1198at 516.873 kb on - strand, within GFF1198at 517.387 kb on - strandat 517.457 kb on + strandat 517.457 kb on + strandat 517.457 kb on + strandat 517.458 kb on - strandat 517.517 kb on + strandat 517.517 kb on + strandat 517.517 kb on + strandat 517.517 kb on + strandat 517.517 kb on + strandat 517.518 kb on - strandat 517.518 kb on - strandat 517.518 kb on - strandat 517.518 kb on - strandat 517.519 kb on + strandat 517.519 kb on + strandat 517.519 kb on + strandat 517.520 kb on - strandat 517.520 kb on - strandat 517.520 kb on - strandat 517.520 kb on - strandat 517.520 kb on - strandat 517.520 kb on - strandat 517.520 kb on - strandat 517.520 kb on - strandat 517.520 kb on - strandat 517.553 kb on + strand, within GFF1199at 517.553 kb on + strand, within GFF1199at 517.554 kb on - strand, within GFF1199at 517.554 kb on - strand, within GFF1199at 517.622 kb on + strand, within GFF1199at 517.622 kb on + strand, within GFF1199at 517.622 kb on + strand, within GFF1199at 517.623 kb on - strand, within GFF1199at 517.625 kb on - strand, within GFF1199at 517.643 kb on + strand, within GFF1199at 517.643 kb on + strand, within GFF1199at 517.643 kb on + strand, within GFF1199at 517.658 kb on + strand, within GFF1199at 517.659 kb on - strand, within GFF1199at 517.659 kb on - strand, within GFF1199at 517.659 kb on - strand, within GFF1199at 517.893 kb on - strand, within GFF1199at 517.893 kb on - strand, within GFF1199at 517.967 kb on + strand, within GFF1199at 517.967 kb on + strand, within GFF1199at 517.968 kb on - strand, within GFF1199at 517.968 kb on - strand, within GFF1199at 518.028 kb on + strand, within GFF1199at 518.028 kb on + strand, within GFF1199at 518.029 kb on - strand, within GFF1199at 518.029 kb on - strand, within GFF1199at 518.219 kb on + strand, within GFF1199at 518.219 kb on + strand, within GFF1199at 518.219 kb on + strand, within GFF1199at 518.220 kb on - strand, within GFF1199at 518.220 kb on - strand, within GFF1199at 518.220 kb on - strand, within GFF1199at 518.220 kb on - strand, within GFF1199at 518.220 kb on - strand, within GFF1199at 518.220 kb on - strand, within GFF1199at 518.220 kb on - strand, within GFF1199at 518.220 kb on - strand, within GFF1199at 518.220 kb on - strand, within GFF1199at 518.220 kb on - strand, within GFF1199at 518.220 kb on - strand, within GFF1199at 518.597 kb on + strand, within GFF1199at 518.597 kb on + strand, within GFF1199at 518.597 kb on + strand, within GFF1199at 518.597 kb on + strand, within GFF1199at 518.597 kb on + strand, within GFF1199at 518.597 kb on + strand, within GFF1199at 518.597 kb on + strand, within GFF1199at 518.597 kb on + strand, within GFF1199at 518.597 kb on + strand, within GFF1199at 518.597 kb on + strand, within GFF1199at 518.597 kb on + strand, within GFF1199at 518.597 kb on + strand, within GFF1199at 518.598 kb on - strandat 518.598 kb on - strandat 518.598 kb on - strandat 518.598 kb on - strandat 518.598 kb on - strandat 518.598 kb on - strandat 518.598 kb on - strandat 518.598 kb on - strandat 518.598 kb on - strandat 518.598 kb on - strandat 518.598 kb on - strandat 518.598 kb on - strandat 518.598 kb on - strandat 518.598 kb on - strandat 518.660 kb on + strandat 518.660 kb on + strandat 518.661 kb on - strandat 518.661 kb on - strandat 518.693 kb on + strandat 518.726 kb on + strandat 518.727 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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516,588 - -0.4
516,640 + +1.7
516,640 + +0.3
516,640 + -0.0
516,640 + +0.1
516,640 + -1.4
516,640 + -0.6
516,641 - -0.4
516,641 - -0.5
516,641 - -1.0
516,641 - -0.3
516,641 - -1.5
516,641 - -0.2
516,641 - -0.1
516,641 - +1.8
516,641 - +2.4
516,641 - +0.4
516,872 + GFF1198 0.38 +1.8
516,872 + GFF1198 0.38 -0.1
516,872 + GFF1198 0.38 -0.4
516,872 + GFF1198 0.38 +0.6
516,872 + GFF1198 0.38 -0.2
516,872 + GFF1198 0.38 +0.4
516,872 + GFF1198 0.38 -0.1
516,873 - GFF1198 0.38 +0.1
516,873 - GFF1198 0.38 -0.6
516,873 - GFF1198 0.38 +0.3
516,873 - GFF1198 0.38 -0.8
516,873 - GFF1198 0.38 +0.3
517,387 - +0.2
517,457 + -0.9
517,457 + +0.3
517,457 + +0.1
517,458 - +0.5
517,517 + -0.1
517,517 + -0.2
517,517 + -0.0
517,517 + +0.0
517,517 + +0.3
517,518 - -0.4
517,518 - -1.1
517,518 - +1.4
517,518 - -0.2
517,519 + -0.2
517,519 + -1.1
517,519 + -0.9
517,520 - +0.1
517,520 - +0.4
517,520 - -0.0
517,520 - -0.2
517,520 - -1.2
517,520 - -0.1
517,520 - -0.4
517,520 - -1.1
517,520 - -1.0
517,553 + GFF1199 0.10 -1.6
517,553 + GFF1199 0.10 -0.8
517,554 - GFF1199 0.10 -1.6
517,554 - GFF1199 0.10 -0.1
517,622 + GFF1199 0.16 +0.6
517,622 + GFF1199 0.16 -0.2
517,622 + GFF1199 0.16 -1.0
517,623 - GFF1199 0.16 -0.3
517,625 - GFF1199 0.16 -0.3
517,643 + GFF1199 0.17 -0.5
517,643 + GFF1199 0.17 -0.9
517,643 + GFF1199 0.17 -0.3
517,658 + GFF1199 0.18 +0.9
517,659 - GFF1199 0.18 +0.8
517,659 - GFF1199 0.18 +0.8
517,659 - GFF1199 0.18 -0.7
517,893 - GFF1199 0.36 -0.7
517,893 - GFF1199 0.36 -1.0
517,967 + GFF1199 0.42 +0.1
517,967 + GFF1199 0.42 -0.9
517,968 - GFF1199 0.42 -0.4
517,968 - GFF1199 0.42 -0.5
518,028 + GFF1199 0.47 +2.7
518,028 + GFF1199 0.47 -0.2
518,029 - GFF1199 0.47 +0.4
518,029 - GFF1199 0.47 +1.1
518,219 + GFF1199 0.61 -1.7
518,219 + GFF1199 0.61 -1.4
518,219 + GFF1199 0.61 -1.2
518,220 - GFF1199 0.61 -0.5
518,220 - GFF1199 0.61 -0.3
518,220 - GFF1199 0.61 +0.0
518,220 - GFF1199 0.61 -0.6
518,220 - GFF1199 0.61 -0.8
518,220 - GFF1199 0.61 +0.1
518,220 - GFF1199 0.61 -0.3
518,220 - GFF1199 0.61 +1.0
518,220 - GFF1199 0.61 -0.6
518,220 - GFF1199 0.61 -1.3
518,220 - GFF1199 0.61 -1.0
518,597 + GFF1199 0.90 +0.2
518,597 + GFF1199 0.90 +0.1
518,597 + GFF1199 0.90 -0.1
518,597 + GFF1199 0.90 +1.4
518,597 + GFF1199 0.90 -0.9
518,597 + GFF1199 0.90 -0.4
518,597 + GFF1199 0.90 -0.8
518,597 + GFF1199 0.90 +0.1
518,597 + GFF1199 0.90 -0.4
518,597 + GFF1199 0.90 +0.3
518,597 + GFF1199 0.90 +0.2
518,597 + GFF1199 0.90 +0.4
518,598 - +0.6
518,598 - -0.7
518,598 - +2.0
518,598 - +0.0
518,598 - -0.7
518,598 - -0.6
518,598 - -0.6
518,598 - -0.8
518,598 - -0.2
518,598 - -0.2
518,598 - -0.6
518,598 - -0.7
518,598 - -1.0
518,598 - +0.4
518,660 + +0.5
518,660 + -0.3
518,661 - -0.3
518,661 - -2.4
518,693 + +0.1
518,726 + -0.8
518,727 - +1.4

Or see this region's nucleotide sequence