Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1130 and GFF1131 are separated by 13 nucleotides GFF1131 and GFF1132 are separated by 3 nucleotides GFF1132 and GFF1133 overlap by 23 nucleotides GFF1133 and GFF1134 are separated by 17 nucleotides
GFF1130 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 446,742 to 447,476
GFF1130
GFF1131 - putative fatty acid desaturase, at 447,490 to 448,398
GFF1131
GFF1132 - 3-oxoacyl-[acyl-carrier-protein] synthase III (EC 2.3.1.41), at 448,402 to 450,327
GFF1132
GFF1133 - FIG00431745: hypothetical protein, at 450,305 to 451,222
GFF1133
GFF1134 - FIG00931167: hypothetical protein, at 451,240 to 451,611
GFF1134
Position (kb) 448
449
450
451 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 447.532 kb on + strand at 447.532 kb on + strand at 447.532 kb on + strand at 447.532 kb on + strand at 447.533 kb on - strand at 447.533 kb on - strand at 447.595 kb on + strand, within GFF1131 at 447.595 kb on + strand, within GFF1131 at 447.595 kb on + strand, within GFF1131 at 447.595 kb on + strand, within GFF1131 at 447.595 kb on + strand, within GFF1131 at 447.596 kb on - strand, within GFF1131 at 447.596 kb on - strand, within GFF1131 at 447.596 kb on - strand, within GFF1131 at 447.596 kb on - strand, within GFF1131 at 447.596 kb on - strand, within GFF1131 at 447.596 kb on - strand, within GFF1131 at 447.802 kb on + strand, within GFF1131 at 447.802 kb on + strand, within GFF1131 at 447.803 kb on - strand, within GFF1131 at 447.838 kb on + strand, within GFF1131 at 447.838 kb on + strand, within GFF1131 at 447.838 kb on + strand, within GFF1131 at 447.838 kb on + strand, within GFF1131 at 447.838 kb on + strand, within GFF1131 at 447.934 kb on + strand, within GFF1131 at 447.934 kb on + strand, within GFF1131 at 447.935 kb on - strand, within GFF1131 at 447.949 kb on + strand, within GFF1131 at 447.949 kb on + strand, within GFF1131 at 447.950 kb on - strand, within GFF1131 at 448.063 kb on + strand, within GFF1131 at 448.063 kb on + strand, within GFF1131 at 448.063 kb on + strand, within GFF1131 at 448.063 kb on + strand, within GFF1131 at 448.063 kb on + strand, within GFF1131 at 448.063 kb on + strand, within GFF1131 at 448.063 kb on + strand, within GFF1131 at 448.064 kb on - strand, within GFF1131 at 448.064 kb on - strand, within GFF1131 at 448.064 kb on - strand, within GFF1131 at 448.064 kb on - strand, within GFF1131 at 448.064 kb on - strand, within GFF1131 at 448.064 kb on - strand, within GFF1131 at 448.064 kb on - strand, within GFF1131 at 448.064 kb on - strand, within GFF1131 at 448.064 kb on - strand, within GFF1131 at 448.064 kb on - strand, within GFF1131 at 448.144 kb on + strand, within GFF1131 at 448.145 kb on - strand, within GFF1131 at 448.145 kb on - strand, within GFF1131 at 448.312 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand at 448.312 kb on + strand at 448.313 kb on - strand at 448.313 kb on - strand at 448.313 kb on - strand at 448.313 kb on - strand at 448.313 kb on - strand at 448.313 kb on - strand at 448.313 kb on - strand at 448.313 kb on - strand at 448.313 kb on - strand at 448.313 kb on - strand at 448.426 kb on + strand at 448.426 kb on + strand at 448.427 kb on - strand at 448.427 kb on - strand at 448.444 kb on + strand at 448.444 kb on + strand at 448.445 kb on - strand at 448.445 kb on - strand at 448.445 kb on - strand at 448.445 kb on - strand at 448.489 kb on + strand at 448.489 kb on + strand at 448.489 kb on + strand at 448.489 kb on + strand at 448.489 kb on + strand at 448.489 kb on + strand at 448.489 kb on + strand at 448.490 kb on - strand at 448.490 kb on - strand at 448.490 kb on - strand at 448.490 kb on - strand at 448.490 kb on - strand at 448.490 kb on - strand at 448.490 kb on - strand at 448.490 kb on - strand at 448.490 kb on - strand at 448.568 kb on - strand at 448.568 kb on - strand at 448.568 kb on - strand at 448.568 kb on - strand at 448.919 kb on - strand, within GFF1132 at 449.072 kb on - strand, within GFF1132 at 449.072 kb on - strand, within GFF1132 at 449.225 kb on - strand, within GFF1132 at 449.287 kb on + strand, within GFF1132 at 449.287 kb on + strand, within GFF1132 at 449.287 kb on + strand, within GFF1132 at 449.288 kb on - strand, within GFF1132 at 449.288 kb on - strand, within GFF1132 at 449.288 kb on - strand, within GFF1132 at 449.288 kb on - strand, within GFF1132 at 449.391 kb on + strand, within GFF1132 at 449.391 kb on + strand, within GFF1132 at 449.391 kb on + strand, within GFF1132 at 449.391 kb on + strand, within GFF1132 at 449.392 kb on - strand, within GFF1132 at 449.473 kb on + strand, within GFF1132 at 449.473 kb on + strand, within GFF1132 at 449.473 kb on + strand, within GFF1132 at 449.474 kb on - strand, within GFF1132 at 449.474 kb on - strand, within GFF1132 at 449.474 kb on - strand, within GFF1132 at 449.474 kb on - strand, within GFF1132 at 449.474 kb on - strand, within GFF1132 at 449.474 kb on - strand, within GFF1132 at 449.474 kb on - strand, within GFF1132 at 449.506 kb on + strand, within GFF1132 at 449.506 kb on + strand, within GFF1132 at 449.506 kb on + strand, within GFF1132 at 449.506 kb on + strand, within GFF1132 at 449.506 kb on + strand, within GFF1132 at 449.506 kb on + strand, within GFF1132 at 449.506 kb on + strand, within GFF1132 at 449.506 kb on + strand, within GFF1132 at 449.506 kb on + strand, within GFF1132 at 449.506 kb on + strand, within GFF1132 at 449.506 kb on + strand, within GFF1132 at 449.506 kb on + strand, within GFF1132 at 449.506 kb on + strand, within GFF1132 at 449.506 kb on + strand, within GFF1132 at 449.506 kb on + strand, within GFF1132 at 449.506 kb on + strand, within GFF1132 at 449.507 kb on - strand, within GFF1132 at 449.507 kb on - strand, within GFF1132 at 449.507 kb on - strand, within GFF1132 at 449.507 kb on - strand, within GFF1132 at 449.507 kb on - strand, within GFF1132 at 449.507 kb on - strand, within GFF1132 at 449.678 kb on - strand, within GFF1132 at 449.746 kb on + strand, within GFF1132 at 449.747 kb on - strand, within GFF1132 at 449.834 kb on - strand, within GFF1132 at 449.834 kb on - strand, within GFF1132 at 449.909 kb on - strand, within GFF1132 at 449.983 kb on + strand, within GFF1132 at 449.983 kb on + strand, within GFF1132 at 449.983 kb on + strand, within GFF1132 at 449.983 kb on + strand, within GFF1132 at 449.984 kb on - strand, within GFF1132 at 450.037 kb on + strand, within GFF1132 at 450.037 kb on + strand, within GFF1132 at 450.037 kb on + strand, within GFF1132 at 450.037 kb on + strand, within GFF1132 at 450.037 kb on + strand, within GFF1132 at 450.037 kb on + strand, within GFF1132 at 450.037 kb on + strand, within GFF1132 at 450.037 kb on + strand, within GFF1132 at 450.037 kb on + strand, within GFF1132 at 450.037 kb on + strand, within GFF1132 at 450.038 kb on - strand, within GFF1132 at 450.038 kb on - strand, within GFF1132 at 450.038 kb on - strand, within GFF1132 at 450.038 kb on - strand, within GFF1132 at 450.038 kb on - strand, within GFF1132 at 450.038 kb on - strand, within GFF1132 at 450.038 kb on - strand, within GFF1132 at 450.038 kb on - strand, within GFF1132 at 450.038 kb on - strand, within GFF1132 at 450.038 kb on - strand, within GFF1132 at 450.038 kb on - strand, within GFF1132 at 450.136 kb on + strand at 450.265 kb on + strand at 450.265 kb on + strand at 450.265 kb on + strand at 450.265 kb on + strand at 450.265 kb on + strand at 450.265 kb on + strand at 450.265 kb on + strand at 450.265 kb on + strand at 450.266 kb on - strand at 450.266 kb on - strand at 450.266 kb on - strand at 450.266 kb on - strand at 450.266 kb on - strand at 450.266 kb on - strand at 450.266 kb on - strand at 450.266 kb on - strand at 450.266 kb on - strand at 450.380 kb on + strand at 450.380 kb on + strand at 450.381 kb on - strand at 450.381 kb on - strand at 450.381 kb on - strand at 450.381 kb on - strand at 450.458 kb on + strand, within GFF1133 at 450.458 kb on + strand, within GFF1133 at 450.458 kb on + strand, within GFF1133 at 450.458 kb on + strand, within GFF1133 at 450.459 kb on - strand, within GFF1133 at 450.459 kb on - strand, within GFF1133 at 450.459 kb on - strand, within GFF1133 at 450.761 kb on + strand, within GFF1133 at 450.938 kb on + strand, within GFF1133 at 450.938 kb on + strand, within GFF1133 at 450.939 kb on - strand, within GFF1133 at 450.939 kb on - strand, within GFF1133 at 451.013 kb on + strand, within GFF1133 at 451.013 kb on + strand, within GFF1133 at 451.013 kb on + strand, within GFF1133 at 451.013 kb on + strand, within GFF1133 at 451.014 kb on - strand, within GFF1133 at 451.014 kb on - strand, within GFF1133 at 451.014 kb on - strand, within GFF1133 at 451.014 kb on - strand, within GFF1133 at 451.014 kb on - strand, within GFF1133 at 451.014 kb on - strand, within GFF1133 at 451.014 kb on - strand, within GFF1133 at 451.203 kb on - strand at 451.203 kb on - strand at 451.203 kb on - strand at 451.203 kb on - strand at 451.203 kb on - strand at 451.220 kb on + strand at 451.220 kb on + strand at 451.220 kb on + strand at 451.220 kb on + strand at 451.221 kb on - strand at 451.221 kb on - strand at 451.221 kb on - strand at 451.221 kb on - strand at 451.221 kb on - strand at 451.221 kb on - strand at 451.221 kb on - strand at 451.221 kb on - strand at 451.226 kb on + strand at 451.226 kb on + strand at 451.226 kb on + strand at 451.226 kb on + strand at 451.226 kb on + strand at 451.226 kb on + strand at 451.226 kb on + strand at 451.226 kb on + strand at 451.226 kb on + strand at 451.226 kb on + strand at 451.226 kb on + strand at 451.226 kb on + strand at 451.226 kb on + strand at 451.226 kb on + strand at 451.226 kb on + strand at 451.226 kb on + strand at 451.226 kb on + strand at 451.226 kb on + strand at 451.226 kb on + strand at 451.226 kb on + strand at 451.226 kb on + strand at 451.226 kb on + strand at 451.226 kb on + strand at 451.226 kb on + strand at 451.227 kb on - strand at 451.227 kb on - strand at 451.227 kb on - strand at 451.227 kb on - strand at 451.227 kb on - strand at 451.227 kb on - strand at 451.227 kb on - strand at 451.227 kb on - strand at 451.227 kb on - strand at 451.227 kb on - strand at 451.227 kb on - strand at 451.227 kb on - strand at 451.227 kb on - strand at 451.227 kb on - strand at 451.227 kb on - strand at 451.227 kb on - strand at 451.227 kb on - strand at 451.227 kb on - strand at 451.227 kb on - strand at 451.227 kb on - strand at 451.227 kb on - strand at 451.227 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 447,532 + +0.6 447,532 + +0.2 447,532 + +0.3 447,532 + -0.2 447,533 - -0.6 447,533 - -1.3 447,595 + GFF1131 0.12 -0.5 447,595 + GFF1131 0.12 -0.4 447,595 + GFF1131 0.12 +1.9 447,595 + GFF1131 0.12 -0.1 447,595 + GFF1131 0.12 -1.1 447,596 - GFF1131 0.12 -1.4 447,596 - GFF1131 0.12 -0.4 447,596 - GFF1131 0.12 +0.4 447,596 - GFF1131 0.12 -1.8 447,596 - GFF1131 0.12 +0.6 447,596 - GFF1131 0.12 -0.4 447,802 + GFF1131 0.34 -0.3 447,802 + GFF1131 0.34 +0.7 447,803 - GFF1131 0.34 -0.3 447,838 + GFF1131 0.38 -1.2 447,838 + GFF1131 0.38 -0.4 447,838 + GFF1131 0.38 -0.6 447,838 + GFF1131 0.38 +2.1 447,838 + GFF1131 0.38 +0.3 447,934 + GFF1131 0.49 -0.2 447,934 + GFF1131 0.49 -0.9 447,935 - GFF1131 0.49 +0.1 447,949 + GFF1131 0.50 +1.4 447,949 + GFF1131 0.50 +0.8 447,950 - GFF1131 0.51 -0.3 448,063 + GFF1131 0.63 -1.9 448,063 + GFF1131 0.63 -1.8 448,063 + GFF1131 0.63 -0.0 448,063 + GFF1131 0.63 -0.0 448,063 + GFF1131 0.63 +0.4 448,063 + GFF1131 0.63 -1.2 448,063 + GFF1131 0.63 +0.4 448,064 - GFF1131 0.63 -0.4 448,064 - GFF1131 0.63 -0.8 448,064 - GFF1131 0.63 -0.8 448,064 - GFF1131 0.63 +0.4 448,064 - GFF1131 0.63 +0.7 448,064 - GFF1131 0.63 -0.3 448,064 - GFF1131 0.63 -0.7 448,064 - GFF1131 0.63 -2.2 448,064 - GFF1131 0.63 +0.0 448,064 - GFF1131 0.63 -0.0 448,144 + GFF1131 0.72 -1.1 448,145 - GFF1131 0.72 -0.7 448,145 - GFF1131 0.72 +0.8 448,312 + +0.1 448,312 + -0.5 448,312 + +0.3 448,312 + -0.4 448,312 + -1.2 448,312 + -0.7 448,312 + +0.3 448,312 + -0.4 448,312 + +0.7 448,312 + -0.9 448,312 + -0.4 448,312 + -0.6 448,312 + -0.7 448,313 - +1.8 448,313 - -0.2 448,313 - -0.4 448,313 - -1.9 448,313 - -1.2 448,313 - -1.6 448,313 - +0.7 448,313 - +0.4 448,313 - +0.0 448,313 - +0.4 448,426 + -1.2 448,426 + -0.8 448,427 - -0.3 448,427 - -0.1 448,444 + +0.6 448,444 + -0.6 448,445 - -0.9 448,445 - -0.1 448,445 - -0.3 448,445 - +0.2 448,489 + -0.4 448,489 + +0.3 448,489 + +2.0 448,489 + -0.0 448,489 + -0.3 448,489 + -0.4 448,489 + +0.3 448,490 - -0.2 448,490 - +0.1 448,490 - +0.6 448,490 - -0.5 448,490 - -0.2 448,490 - +0.1 448,490 - -0.8 448,490 - +0.2 448,490 - -0.2 448,568 - -0.0 448,568 - -0.8 448,568 - +1.4 448,568 - -1.6 448,919 - GFF1132 0.27 +0.1 449,072 - GFF1132 0.35 -0.8 449,072 - GFF1132 0.35 +0.2 449,225 - GFF1132 0.43 -0.3 449,287 + GFF1132 0.46 -0.1 449,287 + GFF1132 0.46 -0.0 449,287 + GFF1132 0.46 -1.4 449,288 - GFF1132 0.46 -0.7 449,288 - GFF1132 0.46 -0.5 449,288 - GFF1132 0.46 +0.1 449,288 - GFF1132 0.46 -0.1 449,391 + GFF1132 0.51 -0.5 449,391 + GFF1132 0.51 -1.1 449,391 + GFF1132 0.51 -0.2 449,391 + GFF1132 0.51 +0.5 449,392 - GFF1132 0.51 +0.2 449,473 + GFF1132 0.56 +0.1 449,473 + GFF1132 0.56 -0.7 449,473 + GFF1132 0.56 -0.0 449,474 - GFF1132 0.56 -0.1 449,474 - GFF1132 0.56 -0.9 449,474 - GFF1132 0.56 -0.1 449,474 - GFF1132 0.56 -0.7 449,474 - GFF1132 0.56 -0.6 449,474 - GFF1132 0.56 -0.7 449,474 - GFF1132 0.56 +1.4 449,506 + GFF1132 0.57 -0.6 449,506 + GFF1132 0.57 -0.8 449,506 + GFF1132 0.57 +0.7 449,506 + GFF1132 0.57 -1.4 449,506 + GFF1132 0.57 +0.7 449,506 + GFF1132 0.57 -0.4 449,506 + GFF1132 0.57 -2.1 449,506 + GFF1132 0.57 +0.1 449,506 + GFF1132 0.57 +0.2 449,506 + GFF1132 0.57 +0.2 449,506 + GFF1132 0.57 +0.3 449,506 + GFF1132 0.57 +0.1 449,506 + GFF1132 0.57 +0.2 449,506 + GFF1132 0.57 -1.0 449,506 + GFF1132 0.57 +0.0 449,506 + GFF1132 0.57 -0.3 449,507 - GFF1132 0.57 +0.2 449,507 - GFF1132 0.57 -0.2 449,507 - GFF1132 0.57 +1.8 449,507 - GFF1132 0.57 +0.2 449,507 - GFF1132 0.57 -0.8 449,507 - GFF1132 0.57 +0.2 449,678 - GFF1132 0.66 -0.1 449,746 + GFF1132 0.70 -1.8 449,747 - GFF1132 0.70 -0.6 449,834 - GFF1132 0.74 +0.6 449,834 - GFF1132 0.74 -1.2 449,909 - GFF1132 0.78 +0.1 449,983 + GFF1132 0.82 -0.1 449,983 + GFF1132 0.82 -0.4 449,983 + GFF1132 0.82 -0.5 449,983 + GFF1132 0.82 +0.3 449,984 - GFF1132 0.82 +0.2 450,037 + GFF1132 0.85 -0.0 450,037 + GFF1132 0.85 +0.7 450,037 + GFF1132 0.85 -1.8 450,037 + GFF1132 0.85 +0.1 450,037 + GFF1132 0.85 +0.1 450,037 + GFF1132 0.85 +1.1 450,037 + GFF1132 0.85 +0.3 450,037 + GFF1132 0.85 -0.4 450,037 + GFF1132 0.85 -0.0 450,037 + GFF1132 0.85 +0.6 450,038 - GFF1132 0.85 +0.2 450,038 - GFF1132 0.85 -0.4 450,038 - GFF1132 0.85 +0.6 450,038 - GFF1132 0.85 -0.7 450,038 - GFF1132 0.85 +0.0 450,038 - GFF1132 0.85 -0.5 450,038 - GFF1132 0.85 +1.4 450,038 - GFF1132 0.85 -0.8 450,038 - GFF1132 0.85 +0.2 450,038 - GFF1132 0.85 +0.3 450,038 - GFF1132 0.85 -0.0 450,136 + -0.2 450,265 + -0.6 450,265 + +0.1 450,265 + -1.8 450,265 + +0.2 450,265 + -0.0 450,265 + -0.7 450,265 + -0.9 450,265 + -0.9 450,266 - -0.6 450,266 - +0.4 450,266 - -1.2 450,266 - -0.2 450,266 - -0.4 450,266 - -1.2 450,266 - +0.4 450,266 - -0.4 450,266 - -1.1 450,380 + -0.1 450,380 + -0.9 450,381 - +0.6 450,381 - +0.3 450,381 - -1.4 450,381 - -0.3 450,458 + GFF1133 0.17 +0.0 450,458 + GFF1133 0.17 -0.2 450,458 + GFF1133 0.17 +0.9 450,458 + GFF1133 0.17 -0.2 450,459 - GFF1133 0.17 -0.9 450,459 - GFF1133 0.17 -0.2 450,459 - GFF1133 0.17 +0.1 450,761 + GFF1133 0.50 -0.5 450,938 + GFF1133 0.69 +1.1 450,938 + GFF1133 0.69 -0.4 450,939 - GFF1133 0.69 -1.3 450,939 - GFF1133 0.69 -0.1 451,013 + GFF1133 0.77 -0.3 451,013 + GFF1133 0.77 -0.9 451,013 + GFF1133 0.77 -0.5 451,013 + GFF1133 0.77 -0.3 451,014 - GFF1133 0.77 -0.3 451,014 - GFF1133 0.77 +0.6 451,014 - GFF1133 0.77 -0.3 451,014 - GFF1133 0.77 +1.4 451,014 - GFF1133 0.77 -0.3 451,014 - GFF1133 0.77 +0.2 451,014 - GFF1133 0.77 +0.4 451,203 - -0.4 451,203 - -0.6 451,203 - -0.3 451,203 - +1.2 451,203 - -0.7 451,220 + -0.3 451,220 + -0.1 451,220 + -0.5 451,220 + -2.6 451,221 - -0.4 451,221 - -0.6 451,221 - +0.4 451,221 - +0.2 451,221 - +0.2 451,221 - -0.3 451,221 - +0.4 451,221 - -0.4 451,226 + -0.1 451,226 + -0.6 451,226 + -0.2 451,226 + +0.4 451,226 + -0.3 451,226 + -1.1 451,226 + -0.5 451,226 + -0.2 451,226 + -0.3 451,226 + -0.5 451,226 + +0.2 451,226 + +0.1 451,226 + +0.0 451,226 + -0.5 451,226 + -1.0 451,226 + -0.9 451,226 + +3.0 451,226 + -0.3 451,226 + -1.6 451,226 + -0.6 451,226 + -1.1 451,226 + -0.1 451,226 + +0.2 451,226 + -0.2 451,227 - +0.9 451,227 - -1.2 451,227 - -0.7 451,227 - +1.4 451,227 - +1.4 451,227 - -0.9 451,227 - -0.4 451,227 - -1.8 451,227 - -0.5 451,227 - -0.1 451,227 - -0.3 451,227 - -2.9 451,227 - +0.6 451,227 - +0.9 451,227 - -0.9 451,227 - +0.7 451,227 - -0.8 451,227 - -0.4 451,227 - -0.1 451,227 - +0.9 451,227 - -0.5 451,227 - -0.1
Or see this region's nucleotide sequence