Strain Fitness in Variovorax sp. SCN45 around GFF1123

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1121 and GFF1122 are separated by 4 nucleotidesGFF1122 and GFF1123 overlap by 4 nucleotidesGFF1123 and GFF1124 are separated by 80 nucleotidesGFF1124 and GFF1125 are separated by 195 nucleotides GFF1121 - Molybdopterin molybdenumtransferase (EC 2.10.1.1), at 437,164 to 438,474 GFF1121 GFF1122 - Molybdenum cofactor guanylyltransferase (EC 2.7.7.77), at 438,479 to 439,138 GFF1122 GFF1123 - GTP 3',8-cyclase (EC 4.1.99.22), at 439,135 to 440,292 GFF1123 GFF1124 - no description, at 440,373 to 441,074 GFF1124 GFF1125 - Superoxide dismutase [Mn] (EC 1.15.1.1), at 441,270 to 441,905 GFF1125 Position (kb) 439 440 441Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 438.255 kb on - strand, within GFF1121at 438.255 kb on - strand, within GFF1121at 438.435 kb on - strandat 438.564 kb on - strand, within GFF1122at 438.882 kb on + strand, within GFF1122at 438.883 kb on - strand, within GFF1122at 438.883 kb on - strand, within GFF1122at 438.927 kb on + strand, within GFF1122at 438.927 kb on + strand, within GFF1122at 438.927 kb on + strand, within GFF1122at 438.927 kb on + strand, within GFF1122at 438.927 kb on + strand, within GFF1122at 438.927 kb on + strand, within GFF1122at 438.927 kb on + strand, within GFF1122at 438.928 kb on - strand, within GFF1122at 438.928 kb on - strand, within GFF1122at 438.928 kb on - strand, within GFF1122at 438.928 kb on - strand, within GFF1122at 438.928 kb on - strand, within GFF1122at 438.928 kb on - strand, within GFF1122at 438.928 kb on - strand, within GFF1122at 438.989 kb on + strand, within GFF1122at 438.989 kb on + strand, within GFF1122at 438.989 kb on + strand, within GFF1122at 438.990 kb on - strand, within GFF1122at 438.990 kb on - strand, within GFF1122at 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.148 kb on + strandat 439.149 kb on - strandat 439.149 kb on - strandat 439.149 kb on - strandat 439.149 kb on - strandat 439.149 kb on - strandat 439.149 kb on - strandat 439.149 kb on - strandat 439.229 kb on + strandat 439.229 kb on + strandat 439.230 kb on - strandat 439.346 kb on + strand, within GFF1123at 439.346 kb on + strand, within GFF1123at 439.346 kb on + strand, within GFF1123at 439.347 kb on - strand, within GFF1123at 439.347 kb on - strand, within GFF1123at 439.347 kb on - strand, within GFF1123at 439.347 kb on - strand, within GFF1123at 439.445 kb on + strand, within GFF1123at 439.445 kb on + strand, within GFF1123at 439.445 kb on + strand, within GFF1123at 439.446 kb on - strand, within GFF1123at 439.446 kb on - strand, within GFF1123at 439.446 kb on - strand, within GFF1123at 439.446 kb on - strand, within GFF1123at 439.586 kb on + strand, within GFF1123at 439.586 kb on + strand, within GFF1123at 439.586 kb on + strand, within GFF1123at 439.586 kb on + strand, within GFF1123at 439.586 kb on + strand, within GFF1123at 439.587 kb on - strand, within GFF1123at 439.587 kb on - strand, within GFF1123at 439.587 kb on - strand, within GFF1123at 439.587 kb on - strand, within GFF1123at 439.587 kb on - strand, within GFF1123at 439.587 kb on - strand, within GFF1123at 439.587 kb on - strand, within GFF1123at 439.587 kb on - strand, within GFF1123at 439.587 kb on - strand, within GFF1123at 439.587 kb on - strand, within GFF1123at 439.634 kb on + strand, within GFF1123at 439.634 kb on + strand, within GFF1123at 439.634 kb on + strand, within GFF1123at 439.635 kb on - strand, within GFF1123at 439.635 kb on - strand, within GFF1123at 439.651 kb on + strand, within GFF1123at 439.651 kb on + strand, within GFF1123at 439.651 kb on + strand, within GFF1123at 439.652 kb on - strand, within GFF1123at 439.652 kb on - strand, within GFF1123at 439.652 kb on - strand, within GFF1123at 439.652 kb on - strand, within GFF1123at 439.652 kb on - strand, within GFF1123at 439.652 kb on - strand, within GFF1123at 439.652 kb on - strand, within GFF1123at 439.652 kb on - strand, within GFF1123at 440.069 kb on + strand, within GFF1123at 440.069 kb on + strand, within GFF1123at 440.069 kb on + strand, within GFF1123at 440.069 kb on + strand, within GFF1123at 440.069 kb on + strand, within GFF1123at 440.070 kb on - strand, within GFF1123at 440.070 kb on - strand, within GFF1123at 440.070 kb on - strand, within GFF1123at 440.070 kb on - strand, within GFF1123at 440.070 kb on - strand, within GFF1123at 440.070 kb on - strand, within GFF1123at 440.075 kb on + strand, within GFF1123at 440.075 kb on + strand, within GFF1123at 440.075 kb on + strand, within GFF1123at 440.075 kb on + strand, within GFF1123at 440.075 kb on + strand, within GFF1123at 440.075 kb on + strand, within GFF1123at 440.076 kb on - strand, within GFF1123at 440.076 kb on - strand, within GFF1123at 440.076 kb on - strand, within GFF1123at 440.076 kb on - strand, within GFF1123at 440.108 kb on + strand, within GFF1123at 440.108 kb on + strand, within GFF1123at 440.108 kb on + strand, within GFF1123at 440.108 kb on + strand, within GFF1123at 440.109 kb on - strand, within GFF1123at 440.109 kb on - strand, within GFF1123at 440.109 kb on - strand, within GFF1123at 440.109 kb on - strand, within GFF1123at 440.109 kb on - strand, within GFF1123at 440.109 kb on - strand, within GFF1123at 440.109 kb on - strand, within GFF1123at 440.109 kb on - strand, within GFF1123at 440.109 kb on - strand, within GFF1123at 440.109 kb on - strand, within GFF1123at 440.343 kb on + strandat 440.343 kb on + strandat 440.344 kb on - strandat 440.344 kb on - strandat 440.374 kb on + strandat 440.449 kb on + strand, within GFF1124at 440.449 kb on + strand, within GFF1124at 440.449 kb on + strand, within GFF1124at 440.450 kb on - strand, within GFF1124at 440.450 kb on - strand, within GFF1124at 440.644 kb on + strand, within GFF1124at 440.644 kb on + strand, within GFF1124at 440.644 kb on + strand, within GFF1124at 440.644 kb on + strand, within GFF1124at 440.645 kb on - strand, within GFF1124at 440.659 kb on + strand, within GFF1124at 440.660 kb on - strand, within GFF1124at 440.728 kb on + strand, within GFF1124at 440.728 kb on + strand, within GFF1124at 440.728 kb on + strand, within GFF1124at 440.728 kb on + strand, within GFF1124at 440.728 kb on + strand, within GFF1124at 440.728 kb on + strand, within GFF1124at 440.728 kb on + strand, within GFF1124at 440.728 kb on + strand, within GFF1124at 440.728 kb on + strand, within GFF1124at 440.728 kb on + strand, within GFF1124at 440.728 kb on + strand, within GFF1124at 440.728 kb on + strand, within GFF1124at 440.729 kb on - strand, within GFF1124at 440.729 kb on - strand, within GFF1124at 440.729 kb on - strand, within GFF1124at 440.729 kb on - strand, within GFF1124at 440.729 kb on - strand, within GFF1124at 440.729 kb on - strand, within GFF1124at 440.729 kb on - strand, within GFF1124at 440.729 kb on - strand, within GFF1124at 440.729 kb on - strand, within GFF1124at 440.829 kb on + strand, within GFF1124at 440.829 kb on + strand, within GFF1124at 440.829 kb on + strand, within GFF1124at 440.829 kb on + strand, within GFF1124at 440.829 kb on + strand, within GFF1124at 440.830 kb on - strand, within GFF1124at 440.830 kb on - strand, within GFF1124at 440.830 kb on - strand, within GFF1124at 440.830 kb on - strand, within GFF1124at 440.830 kb on - strand, within GFF1124at 440.830 kb on - strand, within GFF1124at 440.830 kb on - strand, within GFF1124at 440.830 kb on - strand, within GFF1124at 440.968 kb on + strand, within GFF1124at 440.968 kb on + strand, within GFF1124at 440.968 kb on + strand, within GFF1124at 440.968 kb on + strand, within GFF1124at 440.968 kb on + strand, within GFF1124at 440.968 kb on + strand, within GFF1124at 440.968 kb on + strand, within GFF1124at 440.968 kb on + strand, within GFF1124at 440.968 kb on + strand, within GFF1124at 440.968 kb on + strand, within GFF1124at 440.968 kb on + strand, within GFF1124at 440.968 kb on + strand, within GFF1124at 440.968 kb on + strand, within GFF1124at 440.969 kb on - strand, within GFF1124at 440.969 kb on - strand, within GFF1124at 440.969 kb on - strand, within GFF1124at 440.969 kb on - strand, within GFF1124at 440.969 kb on - strand, within GFF1124at 440.969 kb on - strand, within GFF1124at 440.969 kb on - strand, within GFF1124at 440.969 kb on - strand, within GFF1124at 440.969 kb on - strand, within GFF1124at 440.969 kb on - strand, within GFF1124at 440.969 kb on - strand, within GFF1124at 440.969 kb on - strand, within GFF1124at 440.974 kb on + strand, within GFF1124at 440.974 kb on + strand, within GFF1124at 440.974 kb on + strand, within GFF1124at 440.974 kb on + strand, within GFF1124at 440.974 kb on + strand, within GFF1124at 440.974 kb on + strand, within GFF1124at 440.974 kb on + strand, within GFF1124at 440.974 kb on + strand, within GFF1124at 440.974 kb on + strand, within GFF1124at 440.974 kb on + strand, within GFF1124at 440.975 kb on - strand, within GFF1124at 440.975 kb on - strand, within GFF1124at 440.975 kb on - strand, within GFF1124at 440.975 kb on - strand, within GFF1124at 440.975 kb on - strand, within GFF1124at 440.975 kb on - strand, within GFF1124at 440.975 kb on - strand, within GFF1124at 440.975 kb on - strand, within GFF1124at 440.975 kb on - strand, within GFF1124at 440.975 kb on - strand, within GFF1124at 440.975 kb on - strand, within GFF1124at 440.975 kb on - strand, within GFF1124at 440.975 kb on - strand, within GFF1124at 440.975 kb on - strand, within GFF1124at 440.975 kb on - strand, within GFF1124at 441.112 kb on + strandat 441.112 kb on + strandat 441.112 kb on + strandat 441.112 kb on + strandat 441.112 kb on + strandat 441.112 kb on + strandat 441.112 kb on + strandat 441.112 kb on + strandat 441.113 kb on - strandat 441.113 kb on - strandat 441.113 kb on - strandat 441.113 kb on - strandat 441.216 kb on + strandat 441.216 kb on + strandat 441.217 kb on - strandat 441.217 kb on - strandat 441.276 kb on + strandat 441.276 kb on + strandat 441.276 kb on + strandat 441.276 kb on + strandat 441.276 kb on + strandat 441.276 kb on + strandat 441.276 kb on + strandat 441.277 kb on - strandat 441.277 kb on - strandat 441.277 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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438,255 - GFF1121 0.83 -0.1
438,255 - GFF1121 0.83 -0.1
438,435 - -0.5
438,564 - GFF1122 0.13 +0.1
438,882 + GFF1122 0.61 -0.4
438,883 - GFF1122 0.61 -0.4
438,883 - GFF1122 0.61 -0.5
438,927 + GFF1122 0.68 +1.1
438,927 + GFF1122 0.68 -1.2
438,927 + GFF1122 0.68 +1.4
438,927 + GFF1122 0.68 -0.8
438,927 + GFF1122 0.68 -0.1
438,927 + GFF1122 0.68 -0.1
438,927 + GFF1122 0.68 +0.1
438,928 - GFF1122 0.68 -0.7
438,928 - GFF1122 0.68 -0.2
438,928 - GFF1122 0.68 +0.3
438,928 - GFF1122 0.68 -0.2
438,928 - GFF1122 0.68 -0.0
438,928 - GFF1122 0.68 -0.4
438,928 - GFF1122 0.68 +1.2
438,989 + GFF1122 0.77 -1.3
438,989 + GFF1122 0.77 -0.6
438,989 + GFF1122 0.77 +0.8
438,990 - GFF1122 0.77 -0.2
438,990 - GFF1122 0.77 -0.3
439,148 + +0.6
439,148 + +0.0
439,148 + -0.5
439,148 + +0.8
439,148 + -1.1
439,148 + +0.6
439,148 + -0.5
439,148 + +0.3
439,148 + -0.6
439,148 + -0.1
439,148 + -0.5
439,148 + -0.2
439,148 + -0.6
439,148 + -0.5
439,148 + +0.4
439,148 + -0.2
439,148 + -0.8
439,149 - -0.1
439,149 - -0.1
439,149 - -0.4
439,149 - -0.5
439,149 - -0.4
439,149 - -0.8
439,149 - +1.1
439,229 + +0.1
439,229 + +0.0
439,230 - +0.1
439,346 + GFF1123 0.18 -0.6
439,346 + GFF1123 0.18 -0.2
439,346 + GFF1123 0.18 -0.0
439,347 - GFF1123 0.18 -0.5
439,347 - GFF1123 0.18 -0.3
439,347 - GFF1123 0.18 -0.2
439,347 - GFF1123 0.18 +0.1
439,445 + GFF1123 0.27 -0.6
439,445 + GFF1123 0.27 -0.6
439,445 + GFF1123 0.27 -0.4
439,446 - GFF1123 0.27 +1.2
439,446 - GFF1123 0.27 +1.4
439,446 - GFF1123 0.27 +0.0
439,446 - GFF1123 0.27 -0.8
439,586 + GFF1123 0.39 -0.2
439,586 + GFF1123 0.39 -0.5
439,586 + GFF1123 0.39 +0.6
439,586 + GFF1123 0.39 -1.7
439,586 + GFF1123 0.39 -1.0
439,587 - GFF1123 0.39 -1.1
439,587 - GFF1123 0.39 +1.2
439,587 - GFF1123 0.39 -0.8
439,587 - GFF1123 0.39 -0.6
439,587 - GFF1123 0.39 -0.2
439,587 - GFF1123 0.39 -1.0
439,587 - GFF1123 0.39 -0.8
439,587 - GFF1123 0.39 -0.2
439,587 - GFF1123 0.39 +0.2
439,587 - GFF1123 0.39 -1.0
439,634 + GFF1123 0.43 -0.5
439,634 + GFF1123 0.43 -0.6
439,634 + GFF1123 0.43 +0.1
439,635 - GFF1123 0.43 -0.6
439,635 - GFF1123 0.43 +0.7
439,651 + GFF1123 0.45 +0.4
439,651 + GFF1123 0.45 -0.4
439,651 + GFF1123 0.45 +0.1
439,652 - GFF1123 0.45 -0.3
439,652 - GFF1123 0.45 -0.5
439,652 - GFF1123 0.45 +0.3
439,652 - GFF1123 0.45 +0.4
439,652 - GFF1123 0.45 -0.5
439,652 - GFF1123 0.45 -0.4
439,652 - GFF1123 0.45 -1.2
439,652 - GFF1123 0.45 -0.4
440,069 + GFF1123 0.81 -0.4
440,069 + GFF1123 0.81 -0.8
440,069 + GFF1123 0.81 -0.2
440,069 + GFF1123 0.81 -0.8
440,069 + GFF1123 0.81 -0.2
440,070 - GFF1123 0.81 +0.3
440,070 - GFF1123 0.81 -0.1
440,070 - GFF1123 0.81 -3.0
440,070 - GFF1123 0.81 -1.2
440,070 - GFF1123 0.81 +0.1
440,070 - GFF1123 0.81 -0.5
440,075 + GFF1123 0.81 +0.2
440,075 + GFF1123 0.81 -0.2
440,075 + GFF1123 0.81 -0.3
440,075 + GFF1123 0.81 -1.2
440,075 + GFF1123 0.81 -0.1
440,075 + GFF1123 0.81 +0.6
440,076 - GFF1123 0.81 +0.3
440,076 - GFF1123 0.81 -1.8
440,076 - GFF1123 0.81 -0.8
440,076 - GFF1123 0.81 -1.4
440,108 + GFF1123 0.84 -2.1
440,108 + GFF1123 0.84 +0.0
440,108 + GFF1123 0.84 +0.4
440,108 + GFF1123 0.84 +0.2
440,109 - GFF1123 0.84 -0.3
440,109 - GFF1123 0.84 -1.4
440,109 - GFF1123 0.84 -0.4
440,109 - GFF1123 0.84 +0.3
440,109 - GFF1123 0.84 -1.9
440,109 - GFF1123 0.84 -0.6
440,109 - GFF1123 0.84 -0.0
440,109 - GFF1123 0.84 +0.4
440,109 - GFF1123 0.84 -1.2
440,109 - GFF1123 0.84 -1.2
440,343 + -0.1
440,343 + -0.4
440,344 - -0.0
440,344 - -0.6
440,374 + -0.3
440,449 + GFF1124 0.11 -0.7
440,449 + GFF1124 0.11 -0.4
440,449 + GFF1124 0.11 +0.4
440,450 - GFF1124 0.11 +0.1
440,450 - GFF1124 0.11 -0.2
440,644 + GFF1124 0.39 -0.3
440,644 + GFF1124 0.39 -0.2
440,644 + GFF1124 0.39 +2.4
440,644 + GFF1124 0.39 -0.2
440,645 - GFF1124 0.39 -0.4
440,659 + GFF1124 0.41 -0.2
440,660 - GFF1124 0.41 -0.2
440,728 + GFF1124 0.51 +0.9
440,728 + GFF1124 0.51 -1.0
440,728 + GFF1124 0.51 +0.1
440,728 + GFF1124 0.51 -0.2
440,728 + GFF1124 0.51 -0.4
440,728 + GFF1124 0.51 -0.2
440,728 + GFF1124 0.51 -0.2
440,728 + GFF1124 0.51 +1.0
440,728 + GFF1124 0.51 -0.2
440,728 + GFF1124 0.51 -0.2
440,728 + GFF1124 0.51 -0.5
440,728 + GFF1124 0.51 -1.8
440,729 - GFF1124 0.51 -0.7
440,729 - GFF1124 0.51 -0.2
440,729 - GFF1124 0.51 -0.0
440,729 - GFF1124 0.51 -1.6
440,729 - GFF1124 0.51 +0.4
440,729 - GFF1124 0.51 -0.8
440,729 - GFF1124 0.51 +0.1
440,729 - GFF1124 0.51 -0.3
440,729 - GFF1124 0.51 -0.3
440,829 + GFF1124 0.65 -0.2
440,829 + GFF1124 0.65 -0.8
440,829 + GFF1124 0.65 -0.6
440,829 + GFF1124 0.65 +0.4
440,829 + GFF1124 0.65 -0.2
440,830 - GFF1124 0.65 -0.2
440,830 - GFF1124 0.65 +2.4
440,830 - GFF1124 0.65 +0.2
440,830 - GFF1124 0.65 -0.6
440,830 - GFF1124 0.65 +1.1
440,830 - GFF1124 0.65 -0.4
440,830 - GFF1124 0.65 -0.5
440,830 - GFF1124 0.65 +0.6
440,968 + GFF1124 0.85 -0.9
440,968 + GFF1124 0.85 +0.4
440,968 + GFF1124 0.85 +0.4
440,968 + GFF1124 0.85 -0.3
440,968 + GFF1124 0.85 +0.5
440,968 + GFF1124 0.85 +1.9
440,968 + GFF1124 0.85 +0.7
440,968 + GFF1124 0.85 +0.7
440,968 + GFF1124 0.85 -0.5
440,968 + GFF1124 0.85 +0.6
440,968 + GFF1124 0.85 -0.6
440,968 + GFF1124 0.85 +0.6
440,968 + GFF1124 0.85 -0.1
440,969 - GFF1124 0.85 -0.3
440,969 - GFF1124 0.85 +0.1
440,969 - GFF1124 0.85 -0.2
440,969 - GFF1124 0.85 -0.9
440,969 - GFF1124 0.85 -1.1
440,969 - GFF1124 0.85 -0.9
440,969 - GFF1124 0.85 -0.4
440,969 - GFF1124 0.85 -0.1
440,969 - GFF1124 0.85 -1.0
440,969 - GFF1124 0.85 -0.4
440,969 - GFF1124 0.85 -1.0
440,969 - GFF1124 0.85 -1.8
440,974 + GFF1124 0.86 +0.1
440,974 + GFF1124 0.86 +0.1
440,974 + GFF1124 0.86 -0.1
440,974 + GFF1124 0.86 -0.0
440,974 + GFF1124 0.86 -0.1
440,974 + GFF1124 0.86 -0.9
440,974 + GFF1124 0.86 -0.2
440,974 + GFF1124 0.86 -0.9
440,974 + GFF1124 0.86 -0.3
440,974 + GFF1124 0.86 -0.1
440,975 - GFF1124 0.86 -0.6
440,975 - GFF1124 0.86 +0.6
440,975 - GFF1124 0.86 -0.0
440,975 - GFF1124 0.86 -0.4
440,975 - GFF1124 0.86 -1.2
440,975 - GFF1124 0.86 -1.2
440,975 - GFF1124 0.86 -0.4
440,975 - GFF1124 0.86 +0.8
440,975 - GFF1124 0.86 +0.5
440,975 - GFF1124 0.86 -0.0
440,975 - GFF1124 0.86 -0.6
440,975 - GFF1124 0.86 -0.5
440,975 - GFF1124 0.86 -0.8
440,975 - GFF1124 0.86 -0.8
440,975 - GFF1124 0.86 +0.2
441,112 + -0.2
441,112 + +0.8
441,112 + -0.0
441,112 + +0.5
441,112 + -0.7
441,112 + +0.4
441,112 + +0.5
441,112 + -0.6
441,113 - -1.4
441,113 - -0.2
441,113 - +1.0
441,113 - -0.5
441,216 + -0.8
441,216 + -1.9
441,217 - +1.4
441,217 - -0.8
441,276 + -0.0
441,276 + +0.1
441,276 + +0.3
441,276 + -0.4
441,276 + -0.5
441,276 + +1.4
441,276 + +0.1
441,277 - -0.4
441,277 - -0.2
441,277 - +0.1

Or see this region's nucleotide sequence