Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1030 and GFF1031 are separated by 84 nucleotides GFF1031 and GFF1032 are separated by 46 nucleotides GFF1032 and GFF1033 are separated by 132 nucleotides
GFF1030 - Ferredoxin reductase, at 344,468 to 345,598
GFF1030
GFF1031 - Acetoacetate decarboxylase (EC 4.1.1.4), at 345,683 to 346,432
GFF1031
GFF1032 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 346,479 to 347,261
GFF1032
GFF1033 - Histone acetyltransferase HPA2 and related acetyltransferases, at 347,394 to 348,335
GFF1033
Position (kb) 346
347
348 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 345.605 kb on + strand at 345.605 kb on + strand at 345.606 kb on - strand at 345.606 kb on - strand at 345.606 kb on - strand at 345.632 kb on + strand at 345.632 kb on + strand at 345.632 kb on + strand at 345.633 kb on - strand at 345.633 kb on - strand at 345.756 kb on - strand at 345.791 kb on + strand, within GFF1031 at 345.791 kb on + strand, within GFF1031 at 345.863 kb on + strand, within GFF1031 at 345.863 kb on + strand, within GFF1031 at 345.863 kb on + strand, within GFF1031 at 345.863 kb on + strand, within GFF1031 at 345.863 kb on + strand, within GFF1031 at 345.864 kb on - strand, within GFF1031 at 345.864 kb on - strand, within GFF1031 at 345.864 kb on - strand, within GFF1031 at 345.864 kb on - strand, within GFF1031 at 345.906 kb on - strand, within GFF1031 at 345.906 kb on - strand, within GFF1031 at 345.971 kb on + strand, within GFF1031 at 345.971 kb on + strand, within GFF1031 at 345.971 kb on + strand, within GFF1031 at 345.971 kb on + strand, within GFF1031 at 345.971 kb on + strand, within GFF1031 at 345.971 kb on + strand, within GFF1031 at 345.972 kb on - strand, within GFF1031 at 345.972 kb on - strand, within GFF1031 at 345.972 kb on - strand, within GFF1031 at 345.986 kb on + strand, within GFF1031 at 345.986 kb on + strand, within GFF1031 at 345.986 kb on + strand, within GFF1031 at 345.986 kb on + strand, within GFF1031 at 345.986 kb on + strand, within GFF1031 at 345.986 kb on + strand, within GFF1031 at 345.986 kb on + strand, within GFF1031 at 345.987 kb on - strand, within GFF1031 at 345.987 kb on - strand, within GFF1031 at 345.987 kb on - strand, within GFF1031 at 345.987 kb on - strand, within GFF1031 at 346.067 kb on + strand, within GFF1031 at 346.067 kb on + strand, within GFF1031 at 346.067 kb on + strand, within GFF1031 at 346.068 kb on - strand, within GFF1031 at 346.100 kb on + strand, within GFF1031 at 346.253 kb on + strand, within GFF1031 at 346.253 kb on + strand, within GFF1031 at 346.254 kb on - strand, within GFF1031 at 346.254 kb on - strand, within GFF1031 at 346.376 kb on + strand at 346.376 kb on + strand at 346.376 kb on + strand at 346.376 kb on + strand at 346.376 kb on + strand at 346.376 kb on + strand at 346.376 kb on + strand at 346.376 kb on + strand at 346.377 kb on - strand at 346.377 kb on - strand at 346.377 kb on - strand at 346.377 kb on - strand at 346.377 kb on - strand at 346.377 kb on - strand at 346.377 kb on - strand at 346.421 kb on + strand at 346.421 kb on + strand at 346.421 kb on + strand at 346.421 kb on + strand at 346.421 kb on + strand at 346.421 kb on + strand at 346.422 kb on - strand at 346.422 kb on - strand at 346.422 kb on - strand at 346.422 kb on - strand at 346.422 kb on - strand at 346.503 kb on + strand at 346.503 kb on + strand at 346.503 kb on + strand at 346.504 kb on - strand at 346.504 kb on - strand at 346.504 kb on - strand at 346.504 kb on - strand at 346.504 kb on - strand at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on + strand, within GFF1032 at 346.863 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.864 kb on - strand, within GFF1032 at 346.893 kb on + strand, within GFF1032 at 346.893 kb on + strand, within GFF1032 at 346.893 kb on + strand, within GFF1032 at 346.893 kb on + strand, within GFF1032 at 346.893 kb on + strand, within GFF1032 at 346.893 kb on + strand, within GFF1032 at 346.893 kb on + strand, within GFF1032 at 346.893 kb on + strand, within GFF1032 at 346.893 kb on + strand, within GFF1032 at 346.894 kb on - strand, within GFF1032 at 346.894 kb on - strand, within GFF1032 at 346.894 kb on - strand, within GFF1032 at 346.894 kb on - strand, within GFF1032 at 346.894 kb on - strand, within GFF1032 at 346.894 kb on - strand, within GFF1032 at 346.894 kb on - strand, within GFF1032 at 346.894 kb on - strand, within GFF1032 at 346.941 kb on + strand, within GFF1032 at 346.941 kb on + strand, within GFF1032 at 346.941 kb on + strand, within GFF1032 at 346.942 kb on - strand, within GFF1032 at 346.942 kb on - strand, within GFF1032 at 347.315 kb on + strand at 347.316 kb on + strand at 347.316 kb on - strand at 347.316 kb on - strand at 347.395 kb on + strand at 347.395 kb on + strand at 347.395 kb on + strand at 347.395 kb on + strand at 347.395 kb on + strand at 347.395 kb on + strand at 347.396 kb on - strand at 347.396 kb on - strand at 347.396 kb on - strand at 347.396 kb on - strand at 347.396 kb on - strand at 347.396 kb on - strand at 347.396 kb on - strand at 347.396 kb on - strand at 347.396 kb on - strand at 347.396 kb on - strand at 347.396 kb on - strand at 347.396 kb on - strand at 347.396 kb on - strand at 347.437 kb on + strand at 347.437 kb on + strand at 347.437 kb on + strand at 347.437 kb on + strand at 347.437 kb on + strand at 347.437 kb on + strand at 347.437 kb on + strand at 347.437 kb on + strand at 347.438 kb on - strand at 347.438 kb on - strand at 347.438 kb on - strand at 347.438 kb on - strand at 347.438 kb on - strand at 347.485 kb on + strand at 347.485 kb on + strand at 347.485 kb on + strand at 347.485 kb on + strand at 347.485 kb on + strand at 347.485 kb on + strand at 347.485 kb on + strand at 347.485 kb on + strand at 347.485 kb on + strand at 347.485 kb on + strand at 347.485 kb on + strand at 347.485 kb on + strand at 347.485 kb on + strand at 347.486 kb on - strand at 347.486 kb on - strand at 347.486 kb on - strand at 347.486 kb on - strand at 347.486 kb on - strand at 347.486 kb on - strand at 347.486 kb on - strand at 347.486 kb on - strand at 347.539 kb on + strand, within GFF1033 at 347.539 kb on + strand, within GFF1033 at 347.539 kb on + strand, within GFF1033 at 347.540 kb on - strand, within GFF1033 at 347.540 kb on - strand, within GFF1033 at 347.540 kb on - strand, within GFF1033 at 347.791 kb on + strand, within GFF1033 at 347.792 kb on - strand, within GFF1033 at 347.792 kb on - strand, within GFF1033 at 347.803 kb on + strand, within GFF1033 at 347.803 kb on + strand, within GFF1033 at 347.803 kb on + strand, within GFF1033 at 347.803 kb on + strand, within GFF1033 at 347.803 kb on + strand, within GFF1033 at 347.803 kb on + strand, within GFF1033 at 347.803 kb on + strand, within GFF1033 at 347.803 kb on + strand, within GFF1033 at 347.803 kb on + strand, within GFF1033 at 347.803 kb on + strand, within GFF1033 at 347.803 kb on + strand, within GFF1033 at 347.803 kb on + strand, within GFF1033 at 347.803 kb on + strand, within GFF1033 at 347.803 kb on + strand, within GFF1033 at 347.803 kb on + strand, within GFF1033 at 347.804 kb on - strand, within GFF1033 at 347.804 kb on - strand, within GFF1033 at 347.804 kb on - strand, within GFF1033 at 347.804 kb on - strand, within GFF1033 at 347.804 kb on - strand, within GFF1033 at 347.804 kb on - strand, within GFF1033 at 347.804 kb on - strand, within GFF1033 at 347.804 kb on - strand, within GFF1033 at 347.804 kb on - strand, within GFF1033 at 347.804 kb on - strand, within GFF1033 at 347.804 kb on - strand, within GFF1033 at 347.804 kb on - strand, within GFF1033 at 347.804 kb on - strand, within GFF1033 at 347.804 kb on - strand, within GFF1033 at 347.804 kb on - strand, within GFF1033 at 347.804 kb on - strand, within GFF1033 at 347.804 kb on - strand, within GFF1033 at 347.804 kb on - strand, within GFF1033 at 348.127 kb on + strand, within GFF1033 at 348.127 kb on + strand, within GFF1033 at 348.127 kb on + strand, within GFF1033 at 348.127 kb on + strand, within GFF1033 at 348.128 kb on - strand, within GFF1033 at 348.128 kb on - strand, within GFF1033 at 348.128 kb on - strand, within GFF1033 at 348.128 kb on - strand, within GFF1033 at 348.128 kb on - strand, within GFF1033 at 348.196 kb on + strand, within GFF1033 at 348.196 kb on + strand, within GFF1033 at 348.196 kb on + strand, within GFF1033 at 348.196 kb on + strand, within GFF1033 at 348.197 kb on - strand, within GFF1033 at 348.197 kb on - strand, within GFF1033 at 348.197 kb on - strand, within GFF1033 at 348.197 kb on - strand, within GFF1033 at 348.197 kb on - strand, within GFF1033 at 348.238 kb on + strand, within GFF1033 at 348.238 kb on + strand, within GFF1033 at 348.238 kb on + strand, within GFF1033 at 348.239 kb on - strand, within GFF1033 at 348.239 kb on - strand, within GFF1033 at 348.239 kb on - strand, within GFF1033 at 348.257 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 345,605 + -0.0 345,605 + -0.1 345,606 - +0.6 345,606 - -0.8 345,606 - -0.2 345,632 + -0.6 345,632 + +0.0 345,632 + -1.1 345,633 - -0.2 345,633 - -0.6 345,756 - -0.2 345,791 + GFF1031 0.14 -0.1 345,791 + GFF1031 0.14 +0.5 345,863 + GFF1031 0.24 -0.2 345,863 + GFF1031 0.24 +0.0 345,863 + GFF1031 0.24 -0.2 345,863 + GFF1031 0.24 -1.4 345,863 + GFF1031 0.24 -0.7 345,864 - GFF1031 0.24 -0.2 345,864 - GFF1031 0.24 +0.2 345,864 - GFF1031 0.24 -0.9 345,864 - GFF1031 0.24 +0.8 345,906 - GFF1031 0.30 +0.3 345,906 - GFF1031 0.30 -1.1 345,971 + GFF1031 0.38 +0.7 345,971 + GFF1031 0.38 -0.2 345,971 + GFF1031 0.38 -0.1 345,971 + GFF1031 0.38 -0.8 345,971 + GFF1031 0.38 +0.0 345,971 + GFF1031 0.38 -0.3 345,972 - GFF1031 0.39 -0.3 345,972 - GFF1031 0.39 -0.4 345,972 - GFF1031 0.39 -1.7 345,986 + GFF1031 0.40 -0.7 345,986 + GFF1031 0.40 -0.1 345,986 + GFF1031 0.40 +0.0 345,986 + GFF1031 0.40 -0.8 345,986 + GFF1031 0.40 -1.0 345,986 + GFF1031 0.40 -0.0 345,986 + GFF1031 0.40 +2.4 345,987 - GFF1031 0.41 -0.6 345,987 - GFF1031 0.41 -0.4 345,987 - GFF1031 0.41 -0.3 345,987 - GFF1031 0.41 +2.4 346,067 + GFF1031 0.51 -0.4 346,067 + GFF1031 0.51 +0.6 346,067 + GFF1031 0.51 -0.1 346,068 - GFF1031 0.51 -0.1 346,100 + GFF1031 0.56 +0.5 346,253 + GFF1031 0.76 -0.8 346,253 + GFF1031 0.76 -0.2 346,254 - GFF1031 0.76 -0.1 346,254 - GFF1031 0.76 -0.4 346,376 + +0.0 346,376 + -0.6 346,376 + -0.2 346,376 + +0.9 346,376 + -0.3 346,376 + +0.2 346,376 + +0.4 346,376 + -0.6 346,377 - -0.6 346,377 - +0.1 346,377 - +0.4 346,377 - +0.1 346,377 - +0.6 346,377 - -0.8 346,377 - +0.1 346,421 + +0.4 346,421 + +0.1 346,421 + +0.4 346,421 + +0.9 346,421 + -0.3 346,421 + -2.0 346,422 - -0.2 346,422 - -0.2 346,422 - +0.6 346,422 - -0.8 346,422 - -1.1 346,503 + +0.1 346,503 + -0.9 346,503 + +0.7 346,504 - -0.0 346,504 - -0.7 346,504 - -0.5 346,504 - -0.1 346,504 - -0.4 346,863 + GFF1032 0.49 +0.7 346,863 + GFF1032 0.49 +0.1 346,863 + GFF1032 0.49 -0.1 346,863 + GFF1032 0.49 -0.2 346,863 + GFF1032 0.49 -0.6 346,863 + GFF1032 0.49 -0.2 346,863 + GFF1032 0.49 -0.1 346,863 + GFF1032 0.49 +0.2 346,863 + GFF1032 0.49 +1.4 346,863 + GFF1032 0.49 -0.2 346,863 + GFF1032 0.49 -0.5 346,863 + GFF1032 0.49 -0.2 346,863 + GFF1032 0.49 -0.5 346,863 + GFF1032 0.49 +0.4 346,863 + GFF1032 0.49 +1.4 346,863 + GFF1032 0.49 -0.6 346,863 + GFF1032 0.49 -0.6 346,863 + GFF1032 0.49 +0.4 346,863 + GFF1032 0.49 -0.0 346,863 + GFF1032 0.49 -0.2 346,863 + GFF1032 0.49 -0.3 346,863 + GFF1032 0.49 -1.2 346,863 + GFF1032 0.49 +0.1 346,863 + GFF1032 0.49 -0.7 346,863 + GFF1032 0.49 -0.7 346,863 + GFF1032 0.49 -0.2 346,863 + GFF1032 0.49 -0.6 346,863 + GFF1032 0.49 -0.4 346,863 + GFF1032 0.49 -0.0 346,863 + GFF1032 0.49 +0.3 346,863 - GFF1032 0.49 -0.5 346,864 - GFF1032 0.49 -0.5 346,864 - GFF1032 0.49 -0.3 346,864 - GFF1032 0.49 -0.3 346,864 - GFF1032 0.49 -0.5 346,864 - GFF1032 0.49 +0.3 346,864 - GFF1032 0.49 -0.4 346,864 - GFF1032 0.49 -0.3 346,864 - GFF1032 0.49 -0.5 346,864 - GFF1032 0.49 -1.7 346,864 - GFF1032 0.49 +0.1 346,864 - GFF1032 0.49 +1.1 346,864 - GFF1032 0.49 +0.0 346,864 - GFF1032 0.49 -0.5 346,864 - GFF1032 0.49 +0.1 346,864 - GFF1032 0.49 -0.2 346,864 - GFF1032 0.49 -0.2 346,864 - GFF1032 0.49 -2.1 346,864 - GFF1032 0.49 -0.6 346,864 - GFF1032 0.49 -0.2 346,864 - GFF1032 0.49 -1.1 346,864 - GFF1032 0.49 -0.6 346,864 - GFF1032 0.49 -1.3 346,864 - GFF1032 0.49 +0.3 346,864 - GFF1032 0.49 -0.6 346,864 - GFF1032 0.49 -0.2 346,893 + GFF1032 0.53 -0.3 346,893 + GFF1032 0.53 -0.0 346,893 + GFF1032 0.53 +0.4 346,893 + GFF1032 0.53 -0.5 346,893 + GFF1032 0.53 -0.1 346,893 + GFF1032 0.53 +0.0 346,893 + GFF1032 0.53 -1.1 346,893 + GFF1032 0.53 -0.0 346,893 + GFF1032 0.53 +0.6 346,894 - GFF1032 0.53 -0.8 346,894 - GFF1032 0.53 -0.6 346,894 - GFF1032 0.53 +1.8 346,894 - GFF1032 0.53 +0.0 346,894 - GFF1032 0.53 -1.3 346,894 - GFF1032 0.53 -0.9 346,894 - GFF1032 0.53 -0.1 346,894 - GFF1032 0.53 -0.6 346,941 + GFF1032 0.59 -0.9 346,941 + GFF1032 0.59 -0.5 346,941 + GFF1032 0.59 +1.4 346,942 - GFF1032 0.59 -0.2 346,942 - GFF1032 0.59 -0.3 347,315 + -0.5 347,316 + -0.7 347,316 - -0.2 347,316 - +0.3 347,395 + -0.4 347,395 + +0.7 347,395 + -0.0 347,395 + -0.0 347,395 + +0.4 347,395 + -1.0 347,396 - -0.9 347,396 - -0.4 347,396 - -0.6 347,396 - -1.4 347,396 - +1.6 347,396 - -0.6 347,396 - +0.2 347,396 - -0.5 347,396 - -1.0 347,396 - +0.6 347,396 - -0.6 347,396 - -0.2 347,396 - -2.6 347,437 + -0.2 347,437 + -1.0 347,437 + +0.2 347,437 + -0.9 347,437 + -0.4 347,437 + -0.1 347,437 + +0.3 347,437 + -0.0 347,438 - -1.8 347,438 - +0.4 347,438 - +0.8 347,438 - +0.1 347,438 - -0.0 347,485 + -0.7 347,485 + +0.4 347,485 + +0.1 347,485 + +0.4 347,485 + -0.4 347,485 + +0.1 347,485 + -0.2 347,485 + -0.3 347,485 + -0.3 347,485 + +1.0 347,485 + +0.8 347,485 + -0.3 347,485 + -0.7 347,486 - +0.4 347,486 - -1.1 347,486 - +0.3 347,486 - -0.3 347,486 - +0.2 347,486 - +0.1 347,486 - -0.9 347,486 - +0.3 347,539 + GFF1033 0.15 -0.4 347,539 + GFF1033 0.15 +0.4 347,539 + GFF1033 0.15 -2.2 347,540 - GFF1033 0.15 -0.2 347,540 - GFF1033 0.15 +0.1 347,540 - GFF1033 0.15 -0.2 347,791 + GFF1033 0.42 +0.0 347,792 - GFF1033 0.42 -0.7 347,792 - GFF1033 0.42 -0.0 347,803 + GFF1033 0.43 -0.4 347,803 + GFF1033 0.43 -1.1 347,803 + GFF1033 0.43 +0.7 347,803 + GFF1033 0.43 +0.4 347,803 + GFF1033 0.43 -0.2 347,803 + GFF1033 0.43 -1.3 347,803 + GFF1033 0.43 +0.3 347,803 + GFF1033 0.43 +1.1 347,803 + GFF1033 0.43 +0.6 347,803 + GFF1033 0.43 +0.6 347,803 + GFF1033 0.43 +1.2 347,803 + GFF1033 0.43 -0.6 347,803 + GFF1033 0.43 -0.6 347,803 + GFF1033 0.43 -0.3 347,803 + GFF1033 0.43 +1.1 347,804 - GFF1033 0.44 +1.0 347,804 - GFF1033 0.44 -0.6 347,804 - GFF1033 0.44 -1.4 347,804 - GFF1033 0.44 -0.7 347,804 - GFF1033 0.44 -0.2 347,804 - GFF1033 0.44 +0.3 347,804 - GFF1033 0.44 +1.4 347,804 - GFF1033 0.44 -3.5 347,804 - GFF1033 0.44 -1.1 347,804 - GFF1033 0.44 -0.1 347,804 - GFF1033 0.44 -1.3 347,804 - GFF1033 0.44 -0.1 347,804 - GFF1033 0.44 -0.4 347,804 - GFF1033 0.44 -0.7 347,804 - GFF1033 0.44 -0.5 347,804 - GFF1033 0.44 -0.7 347,804 - GFF1033 0.44 -1.8 347,804 - GFF1033 0.44 -0.6 348,127 + GFF1033 0.78 -0.9 348,127 + GFF1033 0.78 -1.6 348,127 + GFF1033 0.78 +0.3 348,127 + GFF1033 0.78 -0.9 348,128 - GFF1033 0.78 -0.4 348,128 - GFF1033 0.78 +0.5 348,128 - GFF1033 0.78 -0.9 348,128 - GFF1033 0.78 -0.1 348,128 - GFF1033 0.78 -0.1 348,196 + GFF1033 0.85 +0.7 348,196 + GFF1033 0.85 +0.4 348,196 + GFF1033 0.85 -0.7 348,196 + GFF1033 0.85 -0.4 348,197 - GFF1033 0.85 -0.5 348,197 - GFF1033 0.85 -0.3 348,197 - GFF1033 0.85 -0.1 348,197 - GFF1033 0.85 +2.0 348,197 - GFF1033 0.85 +0.4 348,238 + GFF1033 0.90 +0.1 348,238 + GFF1033 0.90 -0.6 348,238 + GFF1033 0.90 +0.4 348,239 - GFF1033 0.90 -0.6 348,239 - GFF1033 0.90 -1.3 348,239 - GFF1033 0.90 +0.9 348,257 + -1.2
Or see this region's nucleotide sequence