Strain Fitness in Variovorax sp. SCN45 around GFF1019

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1017 and GFF1018 are separated by 33 nucleotidesGFF1018 and GFF1019 are separated by 7 nucleotidesGFF1019 and GFF1020 are separated by 290 nucleotidesGFF1020 and GFF1021 are separated by 104 nucleotides GFF1017 - conserved hypothetical protein-transmembrane prediction, at 334,966 to 335,946 GFF1017 GFF1018 - 23S rRNA (guanosine(2251)-2'-O)-methyltransferase (EC 2.1.1.185), at 335,980 to 336,726 GFF1018 GFF1019 - monooxygenase, FAD-binding, at 336,734 to 337,759 GFF1019 GFF1020 - hypothetical protein, at 338,050 to 338,220 GFF1020 GFF1021 - Transcriptional regulator, Xre-family with cupin domain, at 338,325 to 338,930 GFF1021 Position (kb) 336 337 338Strain fitness (log2 ratio) -2 -1 0 1 2at 335.891 kb on + strandat 335.892 kb on - strandat 335.965 kb on - strandat 335.965 kb on - strandat 335.965 kb on - strandat 335.970 kb on + strandat 335.971 kb on - strandat 336.042 kb on + strandat 336.442 kb on + strand, within GFF1018at 336.442 kb on + strand, within GFF1018at 336.442 kb on + strand, within GFF1018at 336.442 kb on + strand, within GFF1018at 336.442 kb on + strand, within GFF1018at 336.442 kb on + strand, within GFF1018at 336.443 kb on - strand, within GFF1018at 336.443 kb on - strand, within GFF1018at 336.443 kb on - strand, within GFF1018at 336.443 kb on - strand, within GFF1018at 336.443 kb on - strand, within GFF1018at 336.534 kb on + strand, within GFF1018at 336.534 kb on + strand, within GFF1018at 336.534 kb on + strand, within GFF1018at 336.535 kb on - strand, within GFF1018at 336.535 kb on - strand, within GFF1018at 336.535 kb on - strand, within GFF1018at 336.535 kb on - strand, within GFF1018at 336.535 kb on - strand, within GFF1018at 336.535 kb on - strand, within GFF1018at 336.535 kb on - strand, within GFF1018at 336.535 kb on - strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.538 kb on + strand, within GFF1018at 336.539 kb on - strand, within GFF1018at 336.539 kb on - strand, within GFF1018at 336.697 kb on + strandat 336.697 kb on + strandat 336.697 kb on + strandat 336.698 kb on - strandat 336.698 kb on - strandat 336.735 kb on + strandat 336.735 kb on + strandat 336.735 kb on + strandat 336.736 kb on - strandat 336.736 kb on - strandat 336.777 kb on + strandat 336.777 kb on + strandat 336.777 kb on + strandat 336.777 kb on + strandat 336.777 kb on + strandat 336.777 kb on + strandat 336.777 kb on + strandat 336.778 kb on - strandat 336.778 kb on - strandat 336.778 kb on - strandat 336.778 kb on - strandat 336.894 kb on + strand, within GFF1019at 336.895 kb on - strand, within GFF1019at 336.895 kb on - strand, within GFF1019at 336.895 kb on - strand, within GFF1019at 337.254 kb on + strand, within GFF1019at 337.255 kb on - strand, within GFF1019at 337.255 kb on - strand, within GFF1019at 337.255 kb on - strand, within GFF1019at 337.255 kb on - strand, within GFF1019at 337.320 kb on + strand, within GFF1019at 337.320 kb on + strand, within GFF1019at 337.321 kb on - strand, within GFF1019at 337.379 kb on + strand, within GFF1019at 337.380 kb on - strand, within GFF1019at 337.413 kb on + strand, within GFF1019at 337.413 kb on + strand, within GFF1019at 337.413 kb on + strand, within GFF1019at 337.413 kb on + strand, within GFF1019at 337.413 kb on + strand, within GFF1019at 337.414 kb on - strand, within GFF1019at 337.414 kb on - strand, within GFF1019at 337.414 kb on - strand, within GFF1019at 337.414 kb on - strand, within GFF1019at 337.414 kb on - strand, within GFF1019at 337.414 kb on - strand, within GFF1019at 337.414 kb on - strand, within GFF1019at 337.414 kb on - strand, within GFF1019at 337.620 kb on + strand, within GFF1019at 337.620 kb on + strand, within GFF1019at 337.621 kb on - strand, within GFF1019at 337.621 kb on - strand, within GFF1019at 337.621 kb on - strand, within GFF1019at 337.646 kb on + strand, within GFF1019at 337.646 kb on + strand, within GFF1019at 337.646 kb on + strand, within GFF1019at 337.646 kb on + strand, within GFF1019at 337.751 kb on + strandat 337.752 kb on - strandat 337.752 kb on - strandat 337.752 kb on - strandat 337.752 kb on - strandat 337.996 kb on + strandat 337.996 kb on + strandat 338.046 kb on + strandat 338.047 kb on - strandat 338.132 kb on + strand, within GFF1020at 338.132 kb on + strand, within GFF1020at 338.132 kb on + strand, within GFF1020at 338.132 kb on + strand, within GFF1020at 338.132 kb on + strand, within GFF1020at 338.133 kb on - strand, within GFF1020at 338.133 kb on - strand, within GFF1020at 338.133 kb on - strand, within GFF1020at 338.133 kb on - strand, within GFF1020at 338.187 kb on + strand, within GFF1020at 338.187 kb on + strand, within GFF1020at 338.187 kb on + strand, within GFF1020at 338.187 kb on + strand, within GFF1020at 338.187 kb on + strand, within GFF1020at 338.187 kb on + strand, within GFF1020at 338.187 kb on + strand, within GFF1020at 338.188 kb on - strand, within GFF1020at 338.188 kb on - strand, within GFF1020at 338.204 kb on + strandat 338.204 kb on + strandat 338.204 kb on + strandat 338.204 kb on + strandat 338.204 kb on + strandat 338.204 kb on + strandat 338.204 kb on + strandat 338.205 kb on - strandat 338.205 kb on - strandat 338.205 kb on - strandat 338.205 kb on - strandat 338.254 kb on + strandat 338.255 kb on - strandat 338.255 kb on - strandat 338.255 kb on - strandat 338.315 kb on + strandat 338.316 kb on - strandat 338.327 kb on - strandat 338.449 kb on + strand, within GFF1021at 338.449 kb on + strand, within GFF1021at 338.450 kb on - strand, within GFF1021at 338.450 kb on - strand, within GFF1021at 338.450 kb on - strand, within GFF1021at 338.518 kb on + strand, within GFF1021at 338.519 kb on - strand, within GFF1021at 338.519 kb on - strand, within GFF1021at 338.605 kb on + strand, within GFF1021at 338.605 kb on + strand, within GFF1021at 338.605 kb on + strand, within GFF1021at 338.605 kb on + strand, within GFF1021at 338.606 kb on - strand, within GFF1021

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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335,891 + +1.1
335,892 - -0.4
335,965 - -0.2
335,965 - +1.7
335,965 - -0.6
335,970 + -0.4
335,971 - -1.1
336,042 + -0.9
336,442 + GFF1018 0.62 +0.1
336,442 + GFF1018 0.62 -1.0
336,442 + GFF1018 0.62 -0.5
336,442 + GFF1018 0.62 +1.1
336,442 + GFF1018 0.62 -0.8
336,442 + GFF1018 0.62 +0.6
336,443 - GFF1018 0.62 -1.6
336,443 - GFF1018 0.62 +0.6
336,443 - GFF1018 0.62 -1.5
336,443 - GFF1018 0.62 -0.8
336,443 - GFF1018 0.62 -1.4
336,534 + GFF1018 0.74 +0.6
336,534 + GFF1018 0.74 -0.0
336,534 + GFF1018 0.74 -1.3
336,535 - GFF1018 0.74 +0.1
336,535 - GFF1018 0.74 -0.2
336,535 - GFF1018 0.74 -0.4
336,535 - GFF1018 0.74 -0.8
336,535 - GFF1018 0.74 -1.8
336,535 - GFF1018 0.74 -0.7
336,535 - GFF1018 0.74 -0.3
336,535 - GFF1018 0.74 -0.6
336,538 + GFF1018 0.75 +0.1
336,538 + GFF1018 0.75 -0.6
336,538 + GFF1018 0.75 -0.4
336,538 + GFF1018 0.75 +1.4
336,538 + GFF1018 0.75 +1.7
336,538 + GFF1018 0.75 -1.2
336,538 + GFF1018 0.75 +0.1
336,538 + GFF1018 0.75 -0.8
336,538 + GFF1018 0.75 -2.2
336,539 - GFF1018 0.75 -0.7
336,539 - GFF1018 0.75 -0.5
336,697 + -0.7
336,697 + -0.7
336,697 + +0.7
336,698 - -0.0
336,698 - -0.6
336,735 + +1.2
336,735 + -0.3
336,735 + -0.7
336,736 - -0.7
336,736 - +0.8
336,777 + +0.7
336,777 + -2.0
336,777 + -0.9
336,777 + +0.1
336,777 + +0.3
336,777 + -0.1
336,777 + -0.3
336,778 - -0.2
336,778 - -0.2
336,778 - -0.3
336,778 - +0.1
336,894 + GFF1019 0.16 +2.0
336,895 - GFF1019 0.16 -0.6
336,895 - GFF1019 0.16 -0.4
336,895 - GFF1019 0.16 -1.3
337,254 + GFF1019 0.51 -0.8
337,255 - GFF1019 0.51 +0.9
337,255 - GFF1019 0.51 +0.1
337,255 - GFF1019 0.51 +0.3
337,255 - GFF1019 0.51 -1.1
337,320 + GFF1019 0.57 -0.6
337,320 + GFF1019 0.57 -0.3
337,321 - GFF1019 0.57 +0.4
337,379 + GFF1019 0.63 -0.0
337,380 - GFF1019 0.63 +0.4
337,413 + GFF1019 0.66 -0.0
337,413 + GFF1019 0.66 -0.2
337,413 + GFF1019 0.66 -0.7
337,413 + GFF1019 0.66 +0.1
337,413 + GFF1019 0.66 +0.1
337,414 - GFF1019 0.66 +0.6
337,414 - GFF1019 0.66 -0.1
337,414 - GFF1019 0.66 +0.4
337,414 - GFF1019 0.66 -0.2
337,414 - GFF1019 0.66 -0.4
337,414 - GFF1019 0.66 +0.1
337,414 - GFF1019 0.66 +0.1
337,414 - GFF1019 0.66 -0.9
337,620 + GFF1019 0.86 +0.8
337,620 + GFF1019 0.86 +0.3
337,621 - GFF1019 0.86 +0.4
337,621 - GFF1019 0.86 +2.1
337,621 - GFF1019 0.86 +0.4
337,646 + GFF1019 0.89 +0.2
337,646 + GFF1019 0.89 -0.6
337,646 + GFF1019 0.89 +0.2
337,646 + GFF1019 0.89 +0.1
337,751 + -0.9
337,752 - -0.6
337,752 - -0.3
337,752 - +0.6
337,752 - -0.4
337,996 + +0.4
337,996 + -0.5
338,046 + -0.2
338,047 - +0.7
338,132 + GFF1020 0.48 -0.5
338,132 + GFF1020 0.48 +0.0
338,132 + GFF1020 0.48 -0.3
338,132 + GFF1020 0.48 -0.3
338,132 + GFF1020 0.48 -0.5
338,133 - GFF1020 0.49 -0.6
338,133 - GFF1020 0.49 -1.5
338,133 - GFF1020 0.49 -0.1
338,133 - GFF1020 0.49 +0.1
338,187 + GFF1020 0.80 +0.6
338,187 + GFF1020 0.80 -2.2
338,187 + GFF1020 0.80 +1.2
338,187 + GFF1020 0.80 +1.4
338,187 + GFF1020 0.80 -0.1
338,187 + GFF1020 0.80 -0.3
338,187 + GFF1020 0.80 -0.3
338,188 - GFF1020 0.81 +0.4
338,188 - GFF1020 0.81 -1.5
338,204 + -0.9
338,204 + +0.4
338,204 + +1.0
338,204 + -1.7
338,204 + +0.3
338,204 + -0.0
338,204 + -0.1
338,205 - -0.5
338,205 - +1.7
338,205 - -0.6
338,205 - +0.8
338,254 + +0.9
338,255 - +0.4
338,255 - +0.2
338,255 - +0.1
338,315 + +0.9
338,316 - -0.3
338,327 - -0.7
338,449 + GFF1021 0.20 +0.6
338,449 + GFF1021 0.20 +0.1
338,450 - GFF1021 0.21 -0.9
338,450 - GFF1021 0.21 -1.3
338,450 - GFF1021 0.21 -0.7
338,518 + GFF1021 0.32 -1.5
338,519 - GFF1021 0.32 -0.4
338,519 - GFF1021 0.32 -2.1
338,605 + GFF1021 0.46 -0.0
338,605 + GFF1021 0.46 -1.1
338,605 + GFF1021 0.46 +0.1
338,605 + GFF1021 0.46 -0.5
338,606 - GFF1021 0.46 +0.3

Or see this region's nucleotide sequence