Strain Fitness in Variovorax sp. SCN45 around GFF101

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF100 and GFF101 are separated by 335 nucleotidesGFF101 and GFF102 are separated by 184 nucleotides GFF100 - no description, at 125,406 to 126,104 GFF100 GFF101 - Phosphate-binding DING protein (related to PstS), at 126,440 to 127,729 GFF101 GFF102 - General secretion pathway protein F, at 127,914 to 129,119 GFF102 Position (kb) 126 127 128Strain fitness (log2 ratio) -2 -1 0 1at 125.547 kb on + strand, within GFF100at 125.548 kb on - strand, within GFF100at 125.548 kb on - strand, within GFF100at 125.548 kb on - strand, within GFF100at 125.548 kb on - strand, within GFF100at 125.651 kb on - strand, within GFF100at 125.958 kb on + strand, within GFF100at 125.958 kb on + strand, within GFF100at 125.958 kb on + strand, within GFF100at 125.958 kb on + strand, within GFF100at 125.958 kb on + strand, within GFF100at 125.959 kb on - strand, within GFF100at 125.959 kb on - strand, within GFF100at 125.984 kb on - strand, within GFF100at 126.248 kb on - strandat 126.622 kb on - strand, within GFF101at 126.622 kb on - strand, within GFF101at 126.622 kb on - strand, within GFF101at 126.672 kb on + strand, within GFF101at 126.672 kb on + strand, within GFF101at 126.672 kb on + strand, within GFF101at 126.672 kb on + strand, within GFF101at 126.672 kb on + strand, within GFF101at 126.672 kb on + strand, within GFF101at 126.673 kb on - strand, within GFF101at 126.673 kb on - strand, within GFF101at 126.673 kb on - strand, within GFF101at 126.673 kb on - strand, within GFF101at 126.673 kb on - strand, within GFF101at 126.673 kb on - strand, within GFF101at 126.751 kb on - strand, within GFF101at 126.751 kb on - strand, within GFF101at 126.888 kb on + strand, within GFF101at 127.111 kb on - strand, within GFF101at 127.152 kb on + strand, within GFF101at 127.153 kb on - strand, within GFF101at 127.294 kb on - strand, within GFF101at 127.294 kb on - strand, within GFF101at 127.401 kb on + strand, within GFF101at 127.401 kb on + strand, within GFF101at 127.401 kb on + strand, within GFF101at 127.402 kb on - strand, within GFF101at 127.402 kb on - strand, within GFF101at 127.402 kb on - strand, within GFF101at 127.563 kb on + strand, within GFF101at 127.563 kb on + strand, within GFF101at 127.563 kb on + strand, within GFF101at 127.569 kb on + strand, within GFF101at 127.569 kb on + strand, within GFF101at 127.569 kb on + strand, within GFF101at 127.570 kb on - strand, within GFF101at 127.570 kb on - strand, within GFF101at 127.570 kb on - strand, within GFF101at 127.850 kb on - strandat 127.894 kb on - strandat 128.561 kb on - strand, within GFF102at 128.615 kb on - strand, within GFF102at 128.632 kb on - strand, within GFF102

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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125,547 + GFF100 0.20 -0.1
125,548 - GFF100 0.20 +0.1
125,548 - GFF100 0.20 -0.4
125,548 - GFF100 0.20 +0.1
125,548 - GFF100 0.20 +0.5
125,651 - GFF100 0.35 +0.0
125,958 + GFF100 0.79 -1.3
125,958 + GFF100 0.79 +0.1
125,958 + GFF100 0.79 -1.1
125,958 + GFF100 0.79 +0.5
125,958 + GFF100 0.79 -1.8
125,959 - GFF100 0.79 +0.0
125,959 - GFF100 0.79 +0.8
125,984 - GFF100 0.83 +0.6
126,248 - +0.3
126,622 - GFF101 0.14 +0.0
126,622 - GFF101 0.14 -0.2
126,622 - GFF101 0.14 -0.0
126,672 + GFF101 0.18 -1.1
126,672 + GFF101 0.18 -0.3
126,672 + GFF101 0.18 -0.8
126,672 + GFF101 0.18 -0.3
126,672 + GFF101 0.18 +0.5
126,672 + GFF101 0.18 -0.5
126,673 - GFF101 0.18 +1.0
126,673 - GFF101 0.18 +0.3
126,673 - GFF101 0.18 -1.7
126,673 - GFF101 0.18 -0.3
126,673 - GFF101 0.18 -0.1
126,673 - GFF101 0.18 -0.2
126,751 - GFF101 0.24 +0.7
126,751 - GFF101 0.24 +0.5
126,888 + GFF101 0.35 -0.8
127,111 - GFF101 0.52 +0.3
127,152 + GFF101 0.55 -1.1
127,153 - GFF101 0.55 -0.4
127,294 - GFF101 0.66 -0.3
127,294 - GFF101 0.66 -0.8
127,401 + GFF101 0.74 -0.6
127,401 + GFF101 0.74 +0.1
127,401 + GFF101 0.74 -0.3
127,402 - GFF101 0.75 +0.7
127,402 - GFF101 0.75 -0.4
127,402 - GFF101 0.75 +0.5
127,563 + GFF101 0.87 -1.8
127,563 + GFF101 0.87 -0.6
127,563 + GFF101 0.87 -0.1
127,569 + GFF101 0.88 -0.5
127,569 + GFF101 0.88 +0.3
127,569 + GFF101 0.88 -0.3
127,570 - GFF101 0.88 -0.8
127,570 - GFF101 0.88 -1.1
127,570 - GFF101 0.88 -0.8
127,850 - +0.7
127,894 - +0.7
128,561 - GFF102 0.54 -0.6
128,615 - GFF102 0.58 +0.2
128,632 - GFF102 0.60 -0.7

Or see this region's nucleotide sequence