Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF913 and GFF914 overlap by 4 nucleotides GFF914 and GFF915 are separated by 1 nucleotides GFF915 and GFF916 are separated by 18 nucleotides
GFF913 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 224,050 to 225,714
GFF913
GFF914 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 225,711 to 226,526
GFF914
GFF915 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 226,528 to 227,472
GFF915
GFF916 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2), at 227,491 to 229,110
GFF916
Position (kb) 225
226
227 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 224.870 kb on - strand, within GFF913 at 224.948 kb on + strand, within GFF913 at 224.948 kb on + strand, within GFF913 at 224.949 kb on - strand, within GFF913 at 224.949 kb on - strand, within GFF913 at 225.116 kb on - strand, within GFF913 at 225.246 kb on - strand, within GFF913 at 225.835 kb on + strand, within GFF914 at 225.835 kb on + strand, within GFF914 at 225.835 kb on + strand, within GFF914 at 225.836 kb on - strand, within GFF914 at 226.003 kb on + strand, within GFF914 at 226.003 kb on + strand, within GFF914 at 226.004 kb on - strand, within GFF914 at 226.042 kb on + strand, within GFF914 at 226.102 kb on + strand, within GFF914 at 226.102 kb on + strand, within GFF914 at 226.103 kb on - strand, within GFF914 at 226.435 kb on + strand, within GFF914 at 226.436 kb on - strand, within GFF914 at 226.436 kb on - strand, within GFF914 at 226.436 kb on - strand, within GFF914 at 226.436 kb on - strand, within GFF914 at 226.436 kb on - strand, within GFF914 at 226.436 kb on - strand, within GFF914 at 226.436 kb on - strand, within GFF914 at 226.436 kb on - strand, within GFF914 at 226.505 kb on + strand at 226.529 kb on + strand at 226.529 kb on + strand at 226.562 kb on + strand at 226.563 kb on - strand at 226.595 kb on + strand at 226.596 kb on - strand at 226.596 kb on - strand at 226.596 kb on - strand at 226.596 kb on - strand at 226.838 kb on + strand, within GFF915 at 226.838 kb on + strand, within GFF915 at 226.839 kb on - strand, within GFF915 at 226.839 kb on - strand, within GFF915 at 226.934 kb on + strand, within GFF915 at 226.935 kb on - strand, within GFF915 at 226.974 kb on - strand, within GFF915 at 226.974 kb on - strand, within GFF915 at 226.974 kb on - strand, within GFF915 at 227.279 kb on + strand, within GFF915 at 227.279 kb on + strand, within GFF915 at 227.280 kb on - strand, within GFF915 at 227.280 kb on - strand, within GFF915 at 227.280 kb on - strand, within GFF915 at 227.280 kb on - strand, within GFF915 at 227.462 kb on + strand at 227.463 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 224,870 - GFF913 0.49 -0.3 224,948 + GFF913 0.54 -0.3 224,948 + GFF913 0.54 -0.9 224,949 - GFF913 0.54 -0.1 224,949 - GFF913 0.54 -0.3 225,116 - GFF913 0.64 -1.1 225,246 - GFF913 0.72 +0.7 225,835 + GFF914 0.15 +1.5 225,835 + GFF914 0.15 +0.5 225,835 + GFF914 0.15 -0.6 225,836 - GFF914 0.15 -0.6 226,003 + GFF914 0.36 -0.1 226,003 + GFF914 0.36 +1.1 226,004 - GFF914 0.36 -0.4 226,042 + GFF914 0.41 +0.1 226,102 + GFF914 0.48 -0.6 226,102 + GFF914 0.48 +0.5 226,103 - GFF914 0.48 -0.5 226,435 + GFF914 0.89 +0.1 226,436 - GFF914 0.89 +0.5 226,436 - GFF914 0.89 -0.2 226,436 - GFF914 0.89 -0.3 226,436 - GFF914 0.89 -1.3 226,436 - GFF914 0.89 -1.1 226,436 - GFF914 0.89 -0.4 226,436 - GFF914 0.89 +0.2 226,436 - GFF914 0.89 +1.8 226,505 + +0.9 226,529 + -0.4 226,529 + -0.3 226,562 + +0.1 226,563 - +0.7 226,595 + +0.4 226,596 - +0.4 226,596 - -0.4 226,596 - -3.2 226,596 - -0.1 226,838 + GFF915 0.33 -0.1 226,838 + GFF915 0.33 +0.1 226,839 - GFF915 0.33 -0.2 226,839 - GFF915 0.33 -0.2 226,934 + GFF915 0.43 -0.2 226,935 - GFF915 0.43 -0.6 226,974 - GFF915 0.47 -0.4 226,974 - GFF915 0.47 -0.9 226,974 - GFF915 0.47 +0.1 227,279 + GFF915 0.79 -0.3 227,279 + GFF915 0.79 -0.0 227,280 - GFF915 0.80 +0.0 227,280 - GFF915 0.80 -0.3 227,280 - GFF915 0.80 +0.0 227,280 - GFF915 0.80 -0.1 227,462 + -0.9 227,463 - +0.7
Or see this region's nucleotide sequence