Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF893 and GFF894 are separated by 34 nucleotides GFF894 and GFF895 are separated by 78 nucleotides GFF895 and GFF896 are separated by 183 nucleotides
GFF893 - FIG138928: iron-regulated membrane protein, at 203,172 to 204,857
GFF893
GFF894 - FIG024006: iron uptake protein, at 204,892 to 205,191
GFF894
GFF895 - Putative transcriptional regulatory protein, at 205,270 to 206,307
GFF895
GFF896 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 206,491 to 207,282
GFF896
Position (kb) 205
206
207 Strain fitness (log2 ratio) -1
0
1
2 at 204.355 kb on + strand, within GFF893 at 204.356 kb on - strand, within GFF893 at 204.356 kb on - strand, within GFF893 at 204.356 kb on - strand, within GFF893 at 204.388 kb on + strand, within GFF893 at 204.388 kb on + strand, within GFF893 at 204.389 kb on - strand, within GFF893 at 204.389 kb on - strand, within GFF893 at 204.517 kb on + strand, within GFF893 at 204.517 kb on + strand, within GFF893 at 204.517 kb on + strand, within GFF893 at 204.518 kb on - strand, within GFF893 at 204.560 kb on - strand, within GFF893 at 204.818 kb on + strand at 204.818 kb on + strand at 204.818 kb on + strand at 204.818 kb on + strand at 204.818 kb on + strand at 204.818 kb on + strand at 204.818 kb on + strand at 204.818 kb on + strand at 204.818 kb on + strand at 204.818 kb on + strand at 204.818 kb on + strand at 204.819 kb on - strand at 204.819 kb on - strand at 204.819 kb on - strand at 204.819 kb on - strand at 204.819 kb on - strand at 204.819 kb on - strand at 204.819 kb on - strand at 204.819 kb on - strand at 204.819 kb on - strand at 205.034 kb on + strand, within GFF894 at 205.034 kb on + strand, within GFF894 at 205.035 kb on - strand, within GFF894 at 205.035 kb on - strand, within GFF894 at 205.035 kb on - strand, within GFF894 at 205.122 kb on - strand, within GFF894 at 205.122 kb on - strand, within GFF894 at 205.122 kb on - strand, within GFF894 at 205.258 kb on + strand at 205.265 kb on + strand at 205.265 kb on + strand at 205.266 kb on - strand at 205.277 kb on - strand at 205.382 kb on + strand, within GFF895 at 205.706 kb on + strand, within GFF895 at 205.707 kb on - strand, within GFF895 at 205.782 kb on - strand, within GFF895 at 206.106 kb on - strand, within GFF895 at 206.106 kb on - strand, within GFF895 at 206.106 kb on - strand, within GFF895 at 206.114 kb on + strand, within GFF895 at 206.114 kb on + strand, within GFF895 at 206.114 kb on + strand, within GFF895 at 206.114 kb on + strand, within GFF895 at 206.114 kb on + strand, within GFF895 at 206.114 kb on + strand, within GFF895 at 206.114 kb on + strand, within GFF895 at 206.114 kb on + strand, within GFF895 at 206.114 kb on + strand, within GFF895 at 206.115 kb on - strand, within GFF895 at 206.115 kb on - strand, within GFF895 at 206.115 kb on - strand, within GFF895 at 206.115 kb on - strand, within GFF895 at 206.115 kb on - strand, within GFF895 at 206.115 kb on - strand, within GFF895 at 206.115 kb on - strand, within GFF895 at 206.115 kb on - strand, within GFF895 at 206.115 kb on - strand, within GFF895 at 206.115 kb on - strand, within GFF895 at 206.115 kb on - strand, within GFF895 at 206.265 kb on - strand at 206.324 kb on - strand at 206.431 kb on - strand at 206.431 kb on - strand at 206.431 kb on - strand at 206.435 kb on + strand at 206.435 kb on + strand at 206.435 kb on + strand at 206.435 kb on + strand at 206.435 kb on + strand at 206.435 kb on + strand at 206.435 kb on + strand at 206.435 kb on + strand at 206.435 kb on + strand at 206.435 kb on + strand at 206.435 kb on + strand at 206.435 kb on + strand at 206.436 kb on - strand at 206.436 kb on - strand at 206.436 kb on - strand at 206.436 kb on - strand at 206.436 kb on - strand at 206.436 kb on - strand at 206.436 kb on - strand at 206.436 kb on - strand at 206.436 kb on - strand at 206.436 kb on - strand at 206.436 kb on - strand at 206.546 kb on + strand at 206.546 kb on + strand at 206.546 kb on + strand at 206.547 kb on - strand at 206.547 kb on - strand at 206.547 kb on - strand at 206.547 kb on - strand at 206.547 kb on - strand at 206.764 kb on + strand, within GFF896 at 206.764 kb on + strand, within GFF896 at 206.764 kb on + strand, within GFF896 at 206.764 kb on + strand, within GFF896 at 206.765 kb on - strand, within GFF896 at 206.765 kb on - strand, within GFF896 at 206.765 kb on - strand, within GFF896 at 206.765 kb on - strand, within GFF896 at 206.765 kb on - strand, within GFF896 at 206.765 kb on - strand, within GFF896 at 206.765 kb on - strand, within GFF896 at 206.944 kb on + strand, within GFF896 at 207.208 kb on + strand at 207.280 kb on + strand at 207.280 kb on + strand at 207.281 kb on - strand at 207.281 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 204,355 + GFF893 0.70 -1.1 204,356 - GFF893 0.70 -0.3 204,356 - GFF893 0.70 -0.5 204,356 - GFF893 0.70 -0.3 204,388 + GFF893 0.72 +0.2 204,388 + GFF893 0.72 -1.1 204,389 - GFF893 0.72 -1.6 204,389 - GFF893 0.72 -1.0 204,517 + GFF893 0.80 +0.4 204,517 + GFF893 0.80 -0.3 204,517 + GFF893 0.80 -0.1 204,518 - GFF893 0.80 +1.3 204,560 - GFF893 0.82 +0.4 204,818 + -0.3 204,818 + +0.5 204,818 + +0.7 204,818 + -0.3 204,818 + -0.8 204,818 + -0.8 204,818 + -1.1 204,818 + -0.1 204,818 + -0.6 204,818 + +0.9 204,818 + +0.0 204,819 - +0.2 204,819 - +0.0 204,819 - -0.4 204,819 - -1.0 204,819 - -0.8 204,819 - -1.5 204,819 - +0.2 204,819 - -0.3 204,819 - +0.3 205,034 + GFF894 0.47 -1.2 205,034 + GFF894 0.47 -0.1 205,035 - GFF894 0.48 -0.5 205,035 - GFF894 0.48 +0.6 205,035 - GFF894 0.48 -0.5 205,122 - GFF894 0.77 -0.9 205,122 - GFF894 0.77 -0.2 205,122 - GFF894 0.77 -1.3 205,258 + -0.0 205,265 + +0.2 205,265 + +0.0 205,266 - -0.6 205,277 - -0.2 205,382 + GFF895 0.11 +0.1 205,706 + GFF895 0.42 -0.1 205,707 - GFF895 0.42 +0.0 205,782 - GFF895 0.49 -0.5 206,106 - GFF895 0.81 +0.4 206,106 - GFF895 0.81 -0.3 206,106 - GFF895 0.81 -0.1 206,114 + GFF895 0.81 -0.7 206,114 + GFF895 0.81 +0.2 206,114 + GFF895 0.81 -0.4 206,114 + GFF895 0.81 +0.5 206,114 + GFF895 0.81 -0.6 206,114 + GFF895 0.81 -0.6 206,114 + GFF895 0.81 +0.6 206,114 + GFF895 0.81 -0.9 206,114 + GFF895 0.81 +0.5 206,115 - GFF895 0.81 -1.5 206,115 - GFF895 0.81 -0.3 206,115 - GFF895 0.81 +1.1 206,115 - GFF895 0.81 -0.6 206,115 - GFF895 0.81 -1.0 206,115 - GFF895 0.81 -0.5 206,115 - GFF895 0.81 +0.6 206,115 - GFF895 0.81 -1.0 206,115 - GFF895 0.81 +2.3 206,115 - GFF895 0.81 +0.2 206,115 - GFF895 0.81 -0.5 206,265 - +0.4 206,324 - -0.6 206,431 - +1.7 206,431 - +0.7 206,431 - -1.3 206,435 + +0.4 206,435 + -0.3 206,435 + +0.4 206,435 + +0.3 206,435 + -0.9 206,435 + -0.6 206,435 + +1.1 206,435 + -1.1 206,435 + -1.3 206,435 + -0.1 206,435 + -1.0 206,435 + -1.0 206,436 - -0.3 206,436 - +0.7 206,436 - -0.1 206,436 - -0.5 206,436 - -0.3 206,436 - +0.5 206,436 - -1.2 206,436 - -0.6 206,436 - -0.8 206,436 - -0.0 206,436 - -0.1 206,546 + +0.3 206,546 + +0.1 206,546 + -0.3 206,547 - -1.3 206,547 - -0.6 206,547 - -0.8 206,547 - +2.1 206,547 - -0.5 206,764 + GFF896 0.34 -0.5 206,764 + GFF896 0.34 -0.4 206,764 + GFF896 0.34 -0.4 206,764 + GFF896 0.34 +0.1 206,765 - GFF896 0.35 -0.2 206,765 - GFF896 0.35 -0.9 206,765 - GFF896 0.35 -0.6 206,765 - GFF896 0.35 -1.0 206,765 - GFF896 0.35 +0.3 206,765 - GFF896 0.35 -0.4 206,765 - GFF896 0.35 +1.2 206,944 + GFF896 0.57 +1.1 207,208 + -0.6 207,280 + -0.3 207,280 + -0.5 207,281 - +0.1 207,281 - +0.2
Or see this region's nucleotide sequence