Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF886 and GFF887 overlap by 4 nucleotides GFF887 and GFF888 are separated by 49 nucleotides GFF888 and GFF889 are separated by 62 nucleotides
GFF886 - Protein of unknown function DUF1446, at 195,275 to 196,699
GFF886
GFF887 - Small uncharacterized protein Bpro_4170, at 196,696 to 197,064
GFF887
GFF888 - BUG/TctC family periplasmic protein, at 197,114 to 198,079
GFF888
GFF889 - FIG00349738: hypothetical protein, at 198,142 to 200,244
GFF889
Position (kb) 197
198
199 Strain fitness (log2 ratio) -1
0
1 at 196.136 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.271 kb on + strand, within GFF886 at 196.272 kb on - strand, within GFF886 at 196.272 kb on - strand, within GFF886 at 196.326 kb on - strand, within GFF886 at 196.565 kb on + strand at 196.565 kb on + strand at 196.565 kb on + strand at 196.886 kb on + strand, within GFF887 at 196.886 kb on + strand, within GFF887 at 196.886 kb on + strand, within GFF887 at 196.887 kb on - strand, within GFF887 at 196.887 kb on - strand, within GFF887 at 197.370 kb on - strand, within GFF888 at 197.567 kb on + strand, within GFF888 at 197.568 kb on - strand, within GFF888 at 197.568 kb on - strand, within GFF888 at 197.654 kb on + strand, within GFF888 at 197.654 kb on + strand, within GFF888 at 197.655 kb on - strand, within GFF888 at 197.841 kb on - strand, within GFF888 at 197.852 kb on + strand, within GFF888 at 197.867 kb on + strand, within GFF888 at 197.868 kb on - strand, within GFF888 at 197.960 kb on + strand, within GFF888 at 197.960 kb on + strand, within GFF888 at 197.960 kb on + strand, within GFF888 at 197.960 kb on + strand, within GFF888 at 197.961 kb on - strand, within GFF888 at 197.961 kb on - strand, within GFF888 at 198.078 kb on - strand at 198.078 kb on - strand at 198.078 kb on - strand at 198.307 kb on + strand at 198.307 kb on + strand at 198.308 kb on - strand at 198.308 kb on - strand at 198.368 kb on - strand, within GFF889 at 198.478 kb on + strand, within GFF889 at 198.478 kb on + strand, within GFF889 at 198.478 kb on + strand, within GFF889 at 198.478 kb on + strand, within GFF889 at 198.479 kb on - strand, within GFF889 at 198.479 kb on - strand, within GFF889 at 198.479 kb on - strand, within GFF889 at 198.479 kb on - strand, within GFF889 at 198.541 kb on + strand, within GFF889 at 198.601 kb on + strand, within GFF889 at 198.601 kb on + strand, within GFF889 at 198.602 kb on - strand, within GFF889 at 198.602 kb on - strand, within GFF889 at 198.712 kb on + strand, within GFF889 at 198.797 kb on - strand, within GFF889 at 198.797 kb on - strand, within GFF889 at 198.832 kb on + strand, within GFF889 at 198.833 kb on - strand, within GFF889 at 198.982 kb on + strand, within GFF889 at 198.989 kb on - strand, within GFF889 at 198.989 kb on - strand, within GFF889 at 198.989 kb on - strand, within GFF889 at 198.989 kb on - strand, within GFF889 at 198.989 kb on - strand, within GFF889 at 199.000 kb on + strand, within GFF889
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 196,136 + GFF886 0.60 -0.6 196,271 + GFF886 0.70 +1.3 196,271 + GFF886 0.70 +0.1 196,271 + GFF886 0.70 -0.5 196,271 + GFF886 0.70 +0.6 196,271 + GFF886 0.70 +0.0 196,271 + GFF886 0.70 -0.4 196,272 - GFF886 0.70 -0.6 196,272 - GFF886 0.70 +0.1 196,326 - GFF886 0.74 +0.7 196,565 + -0.5 196,565 + -0.3 196,565 + +0.6 196,886 + GFF887 0.51 +0.7 196,886 + GFF887 0.51 -0.1 196,886 + GFF887 0.51 -0.4 196,887 - GFF887 0.52 -0.7 196,887 - GFF887 0.52 -0.7 197,370 - GFF888 0.27 +1.3 197,567 + GFF888 0.47 +1.1 197,568 - GFF888 0.47 -1.1 197,568 - GFF888 0.47 -0.9 197,654 + GFF888 0.56 +1.0 197,654 + GFF888 0.56 +0.2 197,655 - GFF888 0.56 -1.7 197,841 - GFF888 0.75 +0.3 197,852 + GFF888 0.76 -0.7 197,867 + GFF888 0.78 -0.8 197,868 - GFF888 0.78 +0.3 197,960 + GFF888 0.88 -0.3 197,960 + GFF888 0.88 -0.4 197,960 + GFF888 0.88 +1.0 197,960 + GFF888 0.88 +0.2 197,961 - GFF888 0.88 -0.5 197,961 - GFF888 0.88 +0.0 198,078 - +0.4 198,078 - -0.2 198,078 - -0.7 198,307 + -1.3 198,307 + -0.1 198,308 - -0.2 198,308 - -0.9 198,368 - GFF889 0.11 -0.1 198,478 + GFF889 0.16 -0.3 198,478 + GFF889 0.16 -0.6 198,478 + GFF889 0.16 -0.1 198,478 + GFF889 0.16 -1.0 198,479 - GFF889 0.16 +0.1 198,479 - GFF889 0.16 -0.9 198,479 - GFF889 0.16 -0.7 198,479 - GFF889 0.16 -1.0 198,541 + GFF889 0.19 -0.7 198,601 + GFF889 0.22 +0.4 198,601 + GFF889 0.22 -0.4 198,602 - GFF889 0.22 -0.6 198,602 - GFF889 0.22 -0.3 198,712 + GFF889 0.27 -0.5 198,797 - GFF889 0.31 -0.1 198,797 - GFF889 0.31 -0.6 198,832 + GFF889 0.33 -0.6 198,833 - GFF889 0.33 -0.8 198,982 + GFF889 0.40 -1.1 198,989 - GFF889 0.40 +0.1 198,989 - GFF889 0.40 -0.2 198,989 - GFF889 0.40 -0.7 198,989 - GFF889 0.40 +0.7 198,989 - GFF889 0.40 +0.7 199,000 + GFF889 0.41 +0.3
Or see this region's nucleotide sequence