Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF80 and GFF81 are separated by 137 nucleotides GFF81 and GFF82 are separated by 8 nucleotides GFF82 and GFF83 overlap by 4 nucleotides
GFF80 - no description, at 96,512 to 98,155
GFF80
GFF81 - Bll6900 protein, at 98,293 to 98,895
GFF81
GFF82 - Alkylhydroperoxidase AhpD domain protein, at 98,904 to 99,557
GFF82
GFF83 - Alkanal monooxygenase alpha chain (EC 1.14.14.3), at 99,554 to 100,615
GFF83
Position (kb) 98
99
100 Strain fitness (log2 ratio) -1
0
1 at 98.109 kb on + strand at 98.110 kb on - strand at 98.110 kb on - strand at 98.146 kb on + strand at 98.146 kb on + strand at 98.147 kb on - strand at 98.147 kb on - strand at 98.189 kb on + strand at 98.190 kb on - strand at 98.582 kb on + strand, within GFF81 at 98.582 kb on + strand, within GFF81 at 98.582 kb on + strand, within GFF81 at 98.660 kb on + strand, within GFF81 at 98.660 kb on + strand, within GFF81 at 98.660 kb on + strand, within GFF81 at 98.661 kb on - strand, within GFF81 at 98.661 kb on - strand, within GFF81 at 98.661 kb on - strand, within GFF81 at 98.729 kb on + strand, within GFF81 at 98.730 kb on - strand, within GFF81 at 98.867 kb on + strand at 98.867 kb on + strand at 98.868 kb on - strand at 99.151 kb on + strand, within GFF82 at 99.152 kb on - strand, within GFF82 at 99.152 kb on - strand, within GFF82 at 99.152 kb on - strand, within GFF82 at 99.196 kb on + strand, within GFF82 at 99.196 kb on + strand, within GFF82 at 99.196 kb on + strand, within GFF82 at 99.196 kb on + strand, within GFF82 at 99.197 kb on - strand, within GFF82 at 99.295 kb on + strand, within GFF82 at 99.295 kb on + strand, within GFF82 at 99.295 kb on + strand, within GFF82 at 99.296 kb on - strand, within GFF82 at 99.296 kb on - strand, within GFF82 at 99.296 kb on - strand, within GFF82 at 99.412 kb on + strand, within GFF82 at 99.412 kb on + strand, within GFF82 at 99.412 kb on + strand, within GFF82 at 99.412 kb on + strand, within GFF82 at 99.413 kb on - strand, within GFF82 at 99.413 kb on - strand, within GFF82 at 99.413 kb on - strand, within GFF82 at 99.413 kb on - strand, within GFF82 at 99.960 kb on + strand, within GFF83 at 100.134 kb on + strand, within GFF83 at 100.135 kb on - strand, within GFF83 at 100.404 kb on + strand, within GFF83 at 100.404 kb on + strand, within GFF83 at 100.404 kb on + strand, within GFF83 at 100.404 kb on + strand, within GFF83 at 100.404 kb on + strand, within GFF83 at 100.404 kb on + strand, within GFF83 at 100.405 kb on - strand, within GFF83 at 100.405 kb on - strand, within GFF83 at 100.405 kb on - strand, within GFF83
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 98,109 + +0.1 98,110 - -1.1 98,110 - +0.6 98,146 + -0.3 98,146 + -0.4 98,147 - -0.4 98,147 - -1.0 98,189 + +0.5 98,190 - -0.0 98,582 + GFF81 0.48 +0.2 98,582 + GFF81 0.48 -0.1 98,582 + GFF81 0.48 -0.1 98,660 + GFF81 0.61 +0.5 98,660 + GFF81 0.61 +0.9 98,660 + GFF81 0.61 +1.4 98,661 - GFF81 0.61 +1.6 98,661 - GFF81 0.61 -0.3 98,661 - GFF81 0.61 +0.6 98,729 + GFF81 0.72 +0.1 98,730 - GFF81 0.72 -0.1 98,867 + -0.7 98,867 + +0.6 98,868 - -0.9 99,151 + GFF82 0.38 +0.8 99,152 - GFF82 0.38 -0.7 99,152 - GFF82 0.38 -0.7 99,152 - GFF82 0.38 -0.2 99,196 + GFF82 0.45 -0.6 99,196 + GFF82 0.45 -0.2 99,196 + GFF82 0.45 +1.6 99,196 + GFF82 0.45 -1.6 99,197 - GFF82 0.45 +0.2 99,295 + GFF82 0.60 -1.0 99,295 + GFF82 0.60 -0.3 99,295 + GFF82 0.60 -0.2 99,296 - GFF82 0.60 -0.8 99,296 - GFF82 0.60 +0.6 99,296 - GFF82 0.60 -0.4 99,412 + GFF82 0.78 +0.0 99,412 + GFF82 0.78 -0.5 99,412 + GFF82 0.78 +0.3 99,412 + GFF82 0.78 +1.0 99,413 - GFF82 0.78 +1.2 99,413 - GFF82 0.78 -0.6 99,413 - GFF82 0.78 -0.9 99,413 - GFF82 0.78 -1.2 99,960 + GFF83 0.38 -0.6 100,134 + GFF83 0.55 -0.2 100,135 - GFF83 0.55 -0.8 100,404 + GFF83 0.80 -1.0 100,404 + GFF83 0.80 +0.2 100,404 + GFF83 0.80 -0.1 100,404 + GFF83 0.80 -0.2 100,404 + GFF83 0.80 -1.6 100,404 + GFF83 0.80 -0.5 100,405 - GFF83 0.80 +0.7 100,405 - GFF83 0.80 -0.6 100,405 - GFF83 0.80 -1.6
Or see this region's nucleotide sequence