Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF753 and GFF754 are separated by 156 nucleotides GFF754 and GFF755 are separated by 147 nucleotides
GFF753 - Methyl-accepting chemotaxis sensor/transducer protein, at 15,889 to 17,532
GFF753
GFF754 - FIG00975093: hypothetical protein, at 17,689 to 18,522
GFF754
GFF755 - Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 18,670 to 20,568
GFF755
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 16.812 kb on - strand, within GFF753 at 16.812 kb on - strand, within GFF753 at 17.057 kb on + strand, within GFF753 at 17.057 kb on + strand, within GFF753 at 17.057 kb on + strand, within GFF753 at 17.057 kb on + strand, within GFF753 at 17.057 kb on + strand, within GFF753 at 17.057 kb on + strand, within GFF753 at 17.058 kb on - strand, within GFF753 at 17.058 kb on - strand, within GFF753 at 17.058 kb on - strand, within GFF753 at 17.058 kb on - strand, within GFF753 at 17.160 kb on - strand, within GFF753 at 17.160 kb on - strand, within GFF753 at 17.285 kb on + strand, within GFF753 at 17.349 kb on + strand, within GFF753 at 17.350 kb on - strand, within GFF753 at 17.440 kb on + strand at 17.467 kb on + strand at 17.467 kb on + strand at 17.468 kb on - strand at 17.546 kb on + strand at 17.546 kb on + strand at 17.637 kb on - strand at 17.660 kb on + strand at 17.664 kb on + strand at 17.881 kb on + strand, within GFF754 at 17.881 kb on + strand, within GFF754 at 17.882 kb on - strand, within GFF754 at 18.000 kb on - strand, within GFF754 at 18.194 kb on + strand, within GFF754 at 18.194 kb on + strand, within GFF754 at 18.195 kb on - strand, within GFF754 at 18.195 kb on - strand, within GFF754 at 18.281 kb on + strand, within GFF754 at 18.281 kb on + strand, within GFF754 at 18.281 kb on + strand, within GFF754 at 18.323 kb on + strand, within GFF754 at 18.324 kb on - strand, within GFF754 at 18.330 kb on - strand, within GFF754 at 18.365 kb on + strand, within GFF754 at 18.365 kb on + strand, within GFF754 at 18.365 kb on + strand, within GFF754 at 18.365 kb on + strand, within GFF754 at 18.366 kb on - strand, within GFF754 at 18.366 kb on - strand, within GFF754 at 18.366 kb on - strand, within GFF754 at 18.366 kb on - strand, within GFF754 at 18.366 kb on - strand, within GFF754 at 18.366 kb on - strand, within GFF754 at 18.618 kb on + strand at 18.618 kb on + strand at 18.618 kb on + strand at 18.618 kb on + strand at 18.619 kb on - strand at 18.619 kb on - strand at 18.619 kb on - strand at 18.619 kb on - strand at 18.619 kb on - strand at 18.619 kb on - strand at 18.619 kb on - strand at 18.619 kb on - strand at 18.662 kb on + strand at 18.662 kb on + strand at 18.662 kb on + strand at 18.663 kb on - strand at 18.663 kb on - strand at 18.663 kb on - strand at 19.156 kb on + strand, within GFF755 at 19.450 kb on + strand, within GFF755 at 19.450 kb on + strand, within GFF755 at 19.450 kb on + strand, within GFF755 at 19.450 kb on + strand, within GFF755 at 19.450 kb on + strand, within GFF755 at 19.451 kb on - strand, within GFF755 at 19.451 kb on - strand, within GFF755 at 19.456 kb on + strand, within GFF755 at 19.456 kb on + strand, within GFF755 at 19.457 kb on - strand, within GFF755 at 19.457 kb on - strand, within GFF755 at 19.457 kb on - strand, within GFF755 at 19.457 kb on - strand, within GFF755 at 19.457 kb on - strand, within GFF755 at 19.457 kb on - strand, within GFF755 at 19.457 kb on - strand, within GFF755 at 19.466 kb on + strand, within GFF755 at 19.477 kb on + strand, within GFF755 at 19.478 kb on - strand, within GFF755
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 16,812 - GFF753 0.56 -0.5 16,812 - GFF753 0.56 +0.4 17,057 + GFF753 0.71 -0.5 17,057 + GFF753 0.71 -0.3 17,057 + GFF753 0.71 +0.1 17,057 + GFF753 0.71 +0.4 17,057 + GFF753 0.71 -1.2 17,057 + GFF753 0.71 -0.1 17,058 - GFF753 0.71 -1.0 17,058 - GFF753 0.71 -1.4 17,058 - GFF753 0.71 -0.3 17,058 - GFF753 0.71 -1.9 17,160 - GFF753 0.77 -1.1 17,160 - GFF753 0.77 -0.3 17,285 + GFF753 0.85 +0.1 17,349 + GFF753 0.89 +0.4 17,350 - GFF753 0.89 -0.8 17,440 + -1.3 17,467 + -0.2 17,467 + +0.3 17,468 - +2.1 17,546 + -2.1 17,546 + -1.0 17,637 - +0.1 17,660 + -1.5 17,664 + -0.7 17,881 + GFF754 0.23 +0.2 17,881 + GFF754 0.23 +0.7 17,882 - GFF754 0.23 +0.0 18,000 - GFF754 0.37 +0.5 18,194 + GFF754 0.61 -0.1 18,194 + GFF754 0.61 +0.2 18,195 - GFF754 0.61 +0.4 18,195 - GFF754 0.61 +0.3 18,281 + GFF754 0.71 +0.0 18,281 + GFF754 0.71 +0.3 18,281 + GFF754 0.71 +0.8 18,323 + GFF754 0.76 -0.9 18,324 - GFF754 0.76 -0.5 18,330 - GFF754 0.77 -0.2 18,365 + GFF754 0.81 -0.6 18,365 + GFF754 0.81 -1.1 18,365 + GFF754 0.81 +0.5 18,365 + GFF754 0.81 +0.3 18,366 - GFF754 0.81 -0.4 18,366 - GFF754 0.81 +0.7 18,366 - GFF754 0.81 -0.2 18,366 - GFF754 0.81 +0.8 18,366 - GFF754 0.81 -0.6 18,366 - GFF754 0.81 +1.9 18,618 + +0.3 18,618 + -0.7 18,618 + -0.1 18,618 + -1.1 18,619 - +0.4 18,619 - +0.7 18,619 - +0.1 18,619 - -0.3 18,619 - -0.7 18,619 - +0.1 18,619 - -0.7 18,619 - +0.2 18,662 + -1.2 18,662 + +0.8 18,662 + +0.5 18,663 - -0.7 18,663 - +0.9 18,663 - -0.1 19,156 + GFF755 0.26 -0.4 19,450 + GFF755 0.41 -0.1 19,450 + GFF755 0.41 -1.7 19,450 + GFF755 0.41 +0.3 19,450 + GFF755 0.41 +0.4 19,450 + GFF755 0.41 +0.4 19,451 - GFF755 0.41 +0.3 19,451 - GFF755 0.41 -0.7 19,456 + GFF755 0.41 -1.1 19,456 + GFF755 0.41 +0.7 19,457 - GFF755 0.41 -0.2 19,457 - GFF755 0.41 +0.1 19,457 - GFF755 0.41 -0.2 19,457 - GFF755 0.41 +0.5 19,457 - GFF755 0.41 +0.1 19,457 - GFF755 0.41 +0.4 19,457 - GFF755 0.41 +0.3 19,466 + GFF755 0.42 -0.7 19,477 + GFF755 0.42 +1.3 19,478 - GFF755 0.43 -0.8
Or see this region's nucleotide sequence