Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7382 and GFF7383 are separated by 537 nucleotides GFF7383 and GFF7384 are separated by 7 nucleotides
GFF7382 - hypothetical protein AF1210, at 83 to 373
GFF7382
GFF7383 - Esterase/lipase, at 911 to 1,903
GFF7383
GFF7384 - hypothetical protein, at 1,911 to 3,020
GFF7384
Position (kb) 0
1
2 Strain fitness (log2 ratio) -1
0
1
2 at 0.069 kb on + strand at 0.069 kb on + strand at 0.092 kb on - strand at 0.119 kb on + strand, within GFF7382 at 0.265 kb on - strand, within GFF7382 at 0.295 kb on - strand, within GFF7382 at 0.437 kb on + strand at 0.538 kb on + strand at 0.538 kb on + strand at 0.539 kb on - strand at 0.539 kb on - strand at 0.539 kb on - strand at 0.539 kb on - strand at 0.599 kb on - strand at 0.697 kb on + strand at 0.698 kb on - strand at 0.999 kb on + strand at 0.999 kb on + strand at 1.119 kb on - strand, within GFF7383 at 1.119 kb on - strand, within GFF7383 at 1.164 kb on - strand, within GFF7383 at 1.205 kb on + strand, within GFF7383 at 1.205 kb on + strand, within GFF7383 at 1.348 kb on + strand, within GFF7383 at 1.390 kb on + strand, within GFF7383 at 1.391 kb on - strand, within GFF7383 at 1.405 kb on + strand, within GFF7383 at 1.406 kb on - strand, within GFF7383 at 1.458 kb on + strand, within GFF7383 at 1.459 kb on - strand, within GFF7383 at 1.459 kb on - strand, within GFF7383 at 1.459 kb on - strand, within GFF7383 at 1.511 kb on + strand, within GFF7383 at 1.512 kb on - strand, within GFF7383 at 1.742 kb on + strand, within GFF7383 at 1.742 kb on + strand, within GFF7383 at 1.742 kb on + strand, within GFF7383 at 1.743 kb on - strand, within GFF7383 at 1.765 kb on - strand, within GFF7383 at 2.175 kb on + strand, within GFF7384 at 2.223 kb on + strand, within GFF7384 at 2.223 kb on + strand, within GFF7384 at 2.223 kb on + strand, within GFF7384
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 69 + +0.2 69 + -1.2 92 - -1.0 119 + GFF7382 0.12 -0.4 265 - GFF7382 0.63 -0.2 295 - GFF7382 0.73 -1.6 437 + +1.7 538 + -0.3 538 + -0.5 539 - +0.5 539 - +0.1 539 - +0.8 539 - -0.2 599 - +0.5 697 + -0.3 698 - -1.0 999 + -0.4 999 + -0.2 1,119 - GFF7383 0.21 +0.6 1,119 - GFF7383 0.21 +2.4 1,164 - GFF7383 0.25 -0.1 1,205 + GFF7383 0.30 -0.3 1,205 + GFF7383 0.30 +0.8 1,348 + GFF7383 0.44 +2.5 1,390 + GFF7383 0.48 -0.5 1,391 - GFF7383 0.48 -0.2 1,405 + GFF7383 0.50 +1.8 1,406 - GFF7383 0.50 +0.4 1,458 + GFF7383 0.55 -0.4 1,459 - GFF7383 0.55 +0.5 1,459 - GFF7383 0.55 -0.4 1,459 - GFF7383 0.55 -0.4 1,511 + GFF7383 0.60 -0.6 1,512 - GFF7383 0.61 -0.4 1,742 + GFF7383 0.84 -1.4 1,742 + GFF7383 0.84 +0.7 1,742 + GFF7383 0.84 -0.2 1,743 - GFF7383 0.84 +0.1 1,765 - GFF7383 0.86 -0.2 2,175 + GFF7384 0.24 -0.2 2,223 + GFF7384 0.28 -0.4 2,223 + GFF7384 0.28 -0.6 2,223 + GFF7384 0.28 +0.0
Or see this region's nucleotide sequence