Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7302 and GFF7303 are separated by 22 nucleotides GFF7303 and GFF7304 are separated by 88 nucleotides
GFF7302 - Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21), at 21,114 to 22,604
GFF7302
GFF7303 - Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27), at 22,627 to 23,940
GFF7303
GFF7304 - Limit dextrin alpha-1,6-maltotetraose-hydrolase (EC 3.2.1.196), at 24,029 to 26,131
GFF7304
Position (kb) 22
23
24 Strain fitness (log2 ratio) -2
-1
0
1
2 at 21.778 kb on + strand, within GFF7302 at 21.779 kb on - strand, within GFF7302 at 21.779 kb on - strand, within GFF7302 at 21.779 kb on - strand, within GFF7302 at 21.779 kb on - strand, within GFF7302 at 21.922 kb on + strand, within GFF7302 at 21.922 kb on + strand, within GFF7302 at 21.923 kb on - strand, within GFF7302 at 21.923 kb on - strand, within GFF7302 at 21.955 kb on + strand, within GFF7302 at 21.956 kb on - strand, within GFF7302 at 21.994 kb on + strand, within GFF7302 at 21.994 kb on + strand, within GFF7302 at 21.995 kb on - strand, within GFF7302 at 21.995 kb on - strand, within GFF7302 at 22.072 kb on + strand, within GFF7302 at 22.073 kb on - strand, within GFF7302 at 22.073 kb on - strand, within GFF7302 at 22.150 kb on + strand, within GFF7302 at 22.150 kb on + strand, within GFF7302 at 22.150 kb on + strand, within GFF7302 at 22.303 kb on + strand, within GFF7302 at 22.303 kb on + strand, within GFF7302 at 22.324 kb on + strand, within GFF7302 at 22.325 kb on - strand, within GFF7302 at 22.348 kb on + strand, within GFF7302 at 22.348 kb on + strand, within GFF7302 at 22.348 kb on + strand, within GFF7302 at 22.348 kb on + strand, within GFF7302 at 22.348 kb on + strand, within GFF7302 at 22.348 kb on + strand, within GFF7302 at 22.349 kb on - strand, within GFF7302 at 22.349 kb on - strand, within GFF7302 at 22.349 kb on - strand, within GFF7302 at 22.349 kb on - strand, within GFF7302 at 22.349 kb on - strand, within GFF7302 at 22.611 kb on + strand at 22.617 kb on + strand at 22.617 kb on + strand at 22.617 kb on + strand at 22.617 kb on + strand at 22.617 kb on + strand at 22.617 kb on + strand at 22.617 kb on + strand at 22.617 kb on + strand at 22.617 kb on + strand at 22.617 kb on + strand at 22.617 kb on + strand at 22.617 kb on + strand at 22.617 kb on + strand at 22.618 kb on - strand at 22.618 kb on - strand at 22.618 kb on - strand at 22.618 kb on - strand at 22.618 kb on - strand at 22.618 kb on - strand at 22.618 kb on - strand at 22.618 kb on - strand at 22.618 kb on - strand at 22.618 kb on - strand at 22.618 kb on - strand at 22.618 kb on - strand at 22.618 kb on - strand at 22.618 kb on - strand at 22.988 kb on + strand, within GFF7303 at 22.988 kb on + strand, within GFF7303 at 22.988 kb on + strand, within GFF7303 at 22.988 kb on + strand, within GFF7303 at 22.988 kb on + strand, within GFF7303 at 22.988 kb on + strand, within GFF7303 at 22.989 kb on - strand, within GFF7303 at 22.989 kb on - strand, within GFF7303 at 22.989 kb on - strand, within GFF7303 at 22.989 kb on - strand, within GFF7303 at 23.015 kb on + strand, within GFF7303 at 23.015 kb on + strand, within GFF7303 at 23.015 kb on + strand, within GFF7303 at 23.015 kb on + strand, within GFF7303 at 23.015 kb on + strand, within GFF7303 at 23.015 kb on + strand, within GFF7303 at 23.016 kb on - strand, within GFF7303 at 23.016 kb on - strand, within GFF7303 at 23.016 kb on - strand, within GFF7303 at 23.016 kb on - strand, within GFF7303 at 23.016 kb on - strand, within GFF7303 at 23.096 kb on + strand, within GFF7303 at 23.096 kb on + strand, within GFF7303 at 23.096 kb on + strand, within GFF7303 at 23.096 kb on + strand, within GFF7303 at 23.097 kb on - strand, within GFF7303 at 23.097 kb on - strand, within GFF7303 at 23.097 kb on - strand, within GFF7303 at 23.097 kb on - strand, within GFF7303 at 23.252 kb on + strand, within GFF7303 at 23.252 kb on + strand, within GFF7303 at 23.258 kb on + strand, within GFF7303 at 23.259 kb on - strand, within GFF7303 at 23.259 kb on - strand, within GFF7303 at 23.259 kb on - strand, within GFF7303 at 23.259 kb on - strand, within GFF7303 at 23.276 kb on + strand, within GFF7303 at 23.276 kb on + strand, within GFF7303 at 23.276 kb on + strand, within GFF7303 at 23.276 kb on + strand, within GFF7303 at 23.276 kb on + strand, within GFF7303 at 23.276 kb on + strand, within GFF7303 at 23.276 kb on + strand, within GFF7303 at 23.276 kb on + strand, within GFF7303 at 23.277 kb on - strand, within GFF7303 at 23.277 kb on - strand, within GFF7303 at 23.277 kb on - strand, within GFF7303 at 23.277 kb on - strand, within GFF7303 at 23.277 kb on - strand, within GFF7303 at 23.277 kb on - strand, within GFF7303 at 23.277 kb on - strand, within GFF7303 at 23.277 kb on - strand, within GFF7303 at 23.277 kb on - strand, within GFF7303 at 23.277 kb on - strand, within GFF7303 at 23.277 kb on - strand, within GFF7303 at 23.277 kb on - strand, within GFF7303 at 23.277 kb on - strand, within GFF7303 at 23.277 kb on - strand, within GFF7303 at 23.477 kb on + strand, within GFF7303 at 23.477 kb on + strand, within GFF7303 at 23.478 kb on - strand, within GFF7303 at 23.478 kb on - strand, within GFF7303 at 23.478 kb on - strand, within GFF7303 at 23.489 kb on + strand, within GFF7303 at 23.489 kb on + strand, within GFF7303 at 23.489 kb on + strand, within GFF7303 at 23.489 kb on + strand, within GFF7303 at 23.489 kb on + strand, within GFF7303 at 23.489 kb on + strand, within GFF7303 at 23.489 kb on + strand, within GFF7303 at 23.489 kb on + strand, within GFF7303 at 23.490 kb on - strand, within GFF7303 at 23.490 kb on - strand, within GFF7303 at 23.493 kb on + strand, within GFF7303 at 23.493 kb on + strand, within GFF7303 at 23.493 kb on + strand, within GFF7303 at 23.493 kb on + strand, within GFF7303 at 23.493 kb on + strand, within GFF7303 at 23.493 kb on + strand, within GFF7303 at 23.493 kb on + strand, within GFF7303 at 23.493 kb on + strand, within GFF7303 at 23.493 kb on + strand, within GFF7303 at 23.493 kb on + strand, within GFF7303 at 23.493 kb on + strand, within GFF7303 at 23.493 kb on + strand, within GFF7303 at 23.493 kb on + strand, within GFF7303 at 23.493 kb on + strand, within GFF7303 at 23.493 kb on + strand, within GFF7303 at 23.493 kb on + strand, within GFF7303 at 23.494 kb on - strand, within GFF7303 at 23.494 kb on - strand, within GFF7303 at 23.494 kb on - strand, within GFF7303 at 23.494 kb on - strand, within GFF7303 at 23.494 kb on - strand, within GFF7303 at 23.494 kb on - strand, within GFF7303 at 23.494 kb on - strand, within GFF7303 at 23.494 kb on - strand, within GFF7303 at 23.494 kb on - strand, within GFF7303 at 23.494 kb on - strand, within GFF7303 at 23.494 kb on - strand, within GFF7303 at 23.494 kb on - strand, within GFF7303 at 23.519 kb on + strand, within GFF7303 at 23.519 kb on + strand, within GFF7303 at 23.519 kb on + strand, within GFF7303 at 23.519 kb on + strand, within GFF7303 at 23.519 kb on + strand, within GFF7303 at 23.519 kb on + strand, within GFF7303 at 23.519 kb on + strand, within GFF7303 at 23.520 kb on - strand, within GFF7303 at 23.520 kb on - strand, within GFF7303 at 23.520 kb on - strand, within GFF7303 at 23.520 kb on - strand, within GFF7303 at 23.589 kb on - strand, within GFF7303 at 23.705 kb on + strand, within GFF7303 at 23.705 kb on + strand, within GFF7303 at 23.705 kb on + strand, within GFF7303 at 23.705 kb on + strand, within GFF7303 at 23.705 kb on + strand, within GFF7303 at 23.706 kb on - strand, within GFF7303 at 23.706 kb on - strand, within GFF7303 at 23.706 kb on - strand, within GFF7303 at 23.706 kb on - strand, within GFF7303 at 23.706 kb on - strand, within GFF7303 at 23.706 kb on - strand, within GFF7303 at 23.706 kb on - strand, within GFF7303 at 23.706 kb on - strand, within GFF7303 at 23.706 kb on - strand, within GFF7303 at 23.706 kb on - strand, within GFF7303 at 23.706 kb on - strand, within GFF7303 at 23.706 kb on - strand, within GFF7303 at 23.792 kb on + strand, within GFF7303 at 23.793 kb on - strand, within GFF7303 at 23.793 kb on - strand, within GFF7303 at 24.004 kb on + strand at 24.004 kb on + strand at 24.004 kb on + strand at 24.004 kb on + strand at 24.004 kb on + strand at 24.004 kb on + strand at 24.005 kb on - strand at 24.030 kb on + strand at 24.030 kb on + strand at 24.030 kb on + strand at 24.030 kb on + strand at 24.030 kb on + strand at 24.031 kb on - strand at 24.031 kb on - strand at 24.031 kb on - strand at 24.031 kb on - strand at 24.031 kb on - strand at 24.031 kb on - strand at 24.031 kb on - strand at 24.031 kb on - strand at 24.031 kb on - strand at 24.031 kb on - strand at 24.504 kb on + strand, within GFF7304 at 24.504 kb on + strand, within GFF7304 at 24.505 kb on - strand, within GFF7304 at 24.505 kb on - strand, within GFF7304 at 24.505 kb on - strand, within GFF7304 at 24.732 kb on + strand, within GFF7304 at 24.732 kb on + strand, within GFF7304 at 24.732 kb on + strand, within GFF7304 at 24.732 kb on + strand, within GFF7304 at 24.733 kb on - strand, within GFF7304 at 24.733 kb on - strand, within GFF7304 at 24.733 kb on - strand, within GFF7304 at 24.733 kb on - strand, within GFF7304
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 21,778 + GFF7302 0.45 -0.6 21,779 - GFF7302 0.45 -0.2 21,779 - GFF7302 0.45 -0.6 21,779 - GFF7302 0.45 +0.8 21,779 - GFF7302 0.45 -0.7 21,922 + GFF7302 0.54 +0.3 21,922 + GFF7302 0.54 +0.6 21,923 - GFF7302 0.54 +1.1 21,923 - GFF7302 0.54 -0.2 21,955 + GFF7302 0.56 -0.1 21,956 - GFF7302 0.56 +0.8 21,994 + GFF7302 0.59 -0.4 21,994 + GFF7302 0.59 +0.5 21,995 - GFF7302 0.59 +0.1 21,995 - GFF7302 0.59 +0.3 22,072 + GFF7302 0.64 +0.0 22,073 - GFF7302 0.64 -0.7 22,073 - GFF7302 0.64 +0.8 22,150 + GFF7302 0.69 -1.0 22,150 + GFF7302 0.69 -0.7 22,150 + GFF7302 0.69 -0.6 22,303 + GFF7302 0.80 -0.4 22,303 + GFF7302 0.80 -0.9 22,324 + GFF7302 0.81 -1.8 22,325 - GFF7302 0.81 -0.3 22,348 + GFF7302 0.83 -0.1 22,348 + GFF7302 0.83 +0.8 22,348 + GFF7302 0.83 +0.4 22,348 + GFF7302 0.83 +0.6 22,348 + GFF7302 0.83 +0.9 22,348 + GFF7302 0.83 -0.1 22,349 - GFF7302 0.83 +0.7 22,349 - GFF7302 0.83 +1.3 22,349 - GFF7302 0.83 -0.8 22,349 - GFF7302 0.83 -1.4 22,349 - GFF7302 0.83 +0.0 22,611 + -0.1 22,617 + -0.8 22,617 + -0.1 22,617 + +0.5 22,617 + +0.6 22,617 + -0.0 22,617 + +0.2 22,617 + +0.8 22,617 + +0.1 22,617 + -0.8 22,617 + -1.1 22,617 + -0.0 22,617 + -0.3 22,617 + -0.3 22,618 - -0.4 22,618 - -0.2 22,618 - +0.7 22,618 - -0.8 22,618 - -0.0 22,618 - -0.4 22,618 - -0.5 22,618 - -0.2 22,618 - -0.5 22,618 - -0.2 22,618 - -0.5 22,618 - +0.7 22,618 - +0.6 22,618 - -0.1 22,988 + GFF7303 0.27 -0.7 22,988 + GFF7303 0.27 -0.4 22,988 + GFF7303 0.27 +0.7 22,988 + GFF7303 0.27 -1.4 22,988 + GFF7303 0.27 -0.1 22,988 + GFF7303 0.27 -0.4 22,989 - GFF7303 0.28 -0.6 22,989 - GFF7303 0.28 +1.3 22,989 - GFF7303 0.28 +0.0 22,989 - GFF7303 0.28 -0.1 23,015 + GFF7303 0.30 +0.6 23,015 + GFF7303 0.30 -0.1 23,015 + GFF7303 0.30 +0.8 23,015 + GFF7303 0.30 -0.4 23,015 + GFF7303 0.30 +0.2 23,015 + GFF7303 0.30 +0.6 23,016 - GFF7303 0.30 +0.7 23,016 - GFF7303 0.30 -0.4 23,016 - GFF7303 0.30 -0.9 23,016 - GFF7303 0.30 -0.7 23,016 - GFF7303 0.30 -0.4 23,096 + GFF7303 0.36 -0.3 23,096 + GFF7303 0.36 -1.0 23,096 + GFF7303 0.36 +0.9 23,096 + GFF7303 0.36 -0.1 23,097 - GFF7303 0.36 +1.1 23,097 - GFF7303 0.36 +1.8 23,097 - GFF7303 0.36 -0.2 23,097 - GFF7303 0.36 -0.0 23,252 + GFF7303 0.48 +0.3 23,252 + GFF7303 0.48 -0.4 23,258 + GFF7303 0.48 -1.4 23,259 - GFF7303 0.48 +0.6 23,259 - GFF7303 0.48 -0.7 23,259 - GFF7303 0.48 -0.5 23,259 - GFF7303 0.48 +0.8 23,276 + GFF7303 0.49 -1.4 23,276 + GFF7303 0.49 -0.1 23,276 + GFF7303 0.49 -0.3 23,276 + GFF7303 0.49 +0.5 23,276 + GFF7303 0.49 +1.3 23,276 + GFF7303 0.49 -0.9 23,276 + GFF7303 0.49 -0.1 23,276 + GFF7303 0.49 +1.3 23,277 - GFF7303 0.49 -0.1 23,277 - GFF7303 0.49 +0.3 23,277 - GFF7303 0.49 -0.1 23,277 - GFF7303 0.49 +0.5 23,277 - GFF7303 0.49 -0.3 23,277 - GFF7303 0.49 -1.4 23,277 - GFF7303 0.49 -0.1 23,277 - GFF7303 0.49 -0.2 23,277 - GFF7303 0.49 -1.0 23,277 - GFF7303 0.49 -0.9 23,277 - GFF7303 0.49 +0.1 23,277 - GFF7303 0.49 -0.4 23,277 - GFF7303 0.49 +0.2 23,277 - GFF7303 0.49 +0.4 23,477 + GFF7303 0.65 -0.8 23,477 + GFF7303 0.65 -1.4 23,478 - GFF7303 0.65 -0.4 23,478 - GFF7303 0.65 +1.5 23,478 - GFF7303 0.65 +0.9 23,489 + GFF7303 0.66 +0.5 23,489 + GFF7303 0.66 +0.0 23,489 + GFF7303 0.66 -0.9 23,489 + GFF7303 0.66 -0.7 23,489 + GFF7303 0.66 -1.0 23,489 + GFF7303 0.66 -0.5 23,489 + GFF7303 0.66 -0.4 23,489 + GFF7303 0.66 -0.5 23,490 - GFF7303 0.66 +0.5 23,490 - GFF7303 0.66 -1.0 23,493 + GFF7303 0.66 -0.4 23,493 + GFF7303 0.66 -0.4 23,493 + GFF7303 0.66 -0.1 23,493 + GFF7303 0.66 -0.3 23,493 + GFF7303 0.66 +0.4 23,493 + GFF7303 0.66 +0.6 23,493 + GFF7303 0.66 -0.2 23,493 + GFF7303 0.66 +0.6 23,493 + GFF7303 0.66 +0.2 23,493 + GFF7303 0.66 +0.9 23,493 + GFF7303 0.66 -1.1 23,493 + GFF7303 0.66 -0.8 23,493 + GFF7303 0.66 -0.5 23,493 + GFF7303 0.66 +0.4 23,493 + GFF7303 0.66 +0.3 23,493 + GFF7303 0.66 +0.9 23,494 - GFF7303 0.66 +0.6 23,494 - GFF7303 0.66 -0.2 23,494 - GFF7303 0.66 -1.1 23,494 - GFF7303 0.66 +0.4 23,494 - GFF7303 0.66 -1.0 23,494 - GFF7303 0.66 +1.1 23,494 - GFF7303 0.66 -0.1 23,494 - GFF7303 0.66 -1.0 23,494 - GFF7303 0.66 -0.8 23,494 - GFF7303 0.66 -0.2 23,494 - GFF7303 0.66 -1.3 23,494 - GFF7303 0.66 -0.5 23,519 + GFF7303 0.68 -0.3 23,519 + GFF7303 0.68 +0.9 23,519 + GFF7303 0.68 -0.6 23,519 + GFF7303 0.68 -0.6 23,519 + GFF7303 0.68 -1.4 23,519 + GFF7303 0.68 -0.8 23,519 + GFF7303 0.68 -0.4 23,520 - GFF7303 0.68 +1.0 23,520 - GFF7303 0.68 +0.3 23,520 - GFF7303 0.68 -0.7 23,520 - GFF7303 0.68 -0.5 23,589 - GFF7303 0.73 -0.5 23,705 + GFF7303 0.82 +0.1 23,705 + GFF7303 0.82 +0.4 23,705 + GFF7303 0.82 +0.5 23,705 + GFF7303 0.82 -0.3 23,705 + GFF7303 0.82 -0.1 23,706 - GFF7303 0.82 -0.3 23,706 - GFF7303 0.82 -0.3 23,706 - GFF7303 0.82 -0.1 23,706 - GFF7303 0.82 -0.4 23,706 - GFF7303 0.82 +0.3 23,706 - GFF7303 0.82 +0.4 23,706 - GFF7303 0.82 -0.9 23,706 - GFF7303 0.82 -0.2 23,706 - GFF7303 0.82 +0.4 23,706 - GFF7303 0.82 -0.3 23,706 - GFF7303 0.82 +0.2 23,706 - GFF7303 0.82 +0.1 23,792 + GFF7303 0.89 +0.7 23,793 - GFF7303 0.89 -0.1 23,793 - GFF7303 0.89 -0.3 24,004 + +0.9 24,004 + -0.3 24,004 + -0.8 24,004 + +0.0 24,004 + +0.4 24,004 + +0.3 24,005 - -0.1 24,030 + -0.5 24,030 + +0.1 24,030 + +1.1 24,030 + +0.2 24,030 + -0.2 24,031 - -0.0 24,031 - +0.6 24,031 - -0.6 24,031 - -0.2 24,031 - -0.2 24,031 - +1.1 24,031 - +0.3 24,031 - -0.8 24,031 - +0.3 24,031 - -0.8 24,504 + GFF7304 0.23 -0.6 24,504 + GFF7304 0.23 +0.2 24,505 - GFF7304 0.23 +0.7 24,505 - GFF7304 0.23 -0.7 24,505 - GFF7304 0.23 -0.3 24,732 + GFF7304 0.33 +0.6 24,732 + GFF7304 0.33 -0.1 24,732 + GFF7304 0.33 +0.3 24,732 + GFF7304 0.33 -0.3 24,733 - GFF7304 0.33 -0.5 24,733 - GFF7304 0.33 -0.4 24,733 - GFF7304 0.33 -0.5 24,733 - GFF7304 0.33 -1.1
Or see this region's nucleotide sequence