Strain Fitness in Variovorax sp. SCN45 around GFF7178

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7176 and GFF7177 are separated by 139 nucleotidesGFF7177 and GFF7178 are separated by 14 nucleotidesGFF7178 and GFF7179 overlap by 4 nucleotides GFF7176 - Transketolase (EC 2.2.1.1), at 39,561 to 41,669 GFF7176 GFF7177 - S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1B, at 41,809 to 42,189 GFF7177 GFF7178 - Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24), at 42,204 to 42,914 GFF7178 GFF7179 - Xaa-Pro aminopeptidase (EC 3.4.11.9), at 42,911 to 44,308 GFF7179 Position (kb) 42 43Strain fitness (log2 ratio) -2 -1 0 1 2at 41.702 kb on - strandat 41.748 kb on + strandat 41.795 kb on + strandat 41.795 kb on + strandat 41.795 kb on + strandat 41.795 kb on + strandat 41.796 kb on - strandat 41.796 kb on - strandat 41.796 kb on - strandat 42.064 kb on + strand, within GFF7177at 42.064 kb on + strand, within GFF7177at 42.064 kb on + strand, within GFF7177at 42.064 kb on + strand, within GFF7177at 42.064 kb on + strand, within GFF7177at 42.064 kb on + strand, within GFF7177at 42.064 kb on + strand, within GFF7177at 42.064 kb on + strand, within GFF7177at 42.065 kb on - strand, within GFF7177at 42.065 kb on - strand, within GFF7177at 42.065 kb on - strand, within GFF7177at 42.065 kb on - strand, within GFF7177at 42.065 kb on - strand, within GFF7177at 42.065 kb on - strand, within GFF7177at 42.065 kb on - strand, within GFF7177at 42.065 kb on - strand, within GFF7177at 42.065 kb on - strand, within GFF7177at 42.065 kb on - strand, within GFF7177at 42.065 kb on - strand, within GFF7177at 42.413 kb on + strand, within GFF7178at 42.723 kb on + strand, within GFF7178at 42.750 kb on + strand, within GFF7178at 42.751 kb on - strand, within GFF7178at 42.849 kb on + strandat 42.849 kb on + strandat 42.849 kb on + strandat 42.850 kb on - strandat 42.850 kb on - strandat 42.850 kb on - strandat 42.938 kb on + strandat 42.939 kb on - strandat 42.939 kb on - strandat 42.939 kb on - strandat 42.939 kb on - strandat 42.939 kb on - strandat 42.939 kb on - strandat 43.043 kb on + strandat 43.044 kb on - strandat 43.044 kb on - strandat 43.058 kb on + strand, within GFF7179at 43.058 kb on + strand, within GFF7179at 43.058 kb on + strand, within GFF7179at 43.058 kb on + strand, within GFF7179at 43.058 kb on + strand, within GFF7179at 43.058 kb on + strand, within GFF7179at 43.058 kb on + strand, within GFF7179at 43.058 kb on + strand, within GFF7179at 43.058 kb on + strand, within GFF7179at 43.058 kb on + strand, within GFF7179at 43.058 kb on + strand, within GFF7179at 43.058 kb on + strand, within GFF7179at 43.058 kb on + strand, within GFF7179at 43.058 kb on + strand, within GFF7179at 43.058 kb on + strand, within GFF7179at 43.058 kb on + strand, within GFF7179at 43.058 kb on + strand, within GFF7179at 43.058 kb on + strand, within GFF7179at 43.058 kb on + strand, within GFF7179at 43.059 kb on - strand, within GFF7179at 43.059 kb on - strand, within GFF7179at 43.059 kb on - strand, within GFF7179at 43.059 kb on - strand, within GFF7179at 43.059 kb on - strand, within GFF7179at 43.059 kb on - strand, within GFF7179at 43.059 kb on - strand, within GFF7179at 43.059 kb on - strand, within GFF7179at 43.059 kb on - strand, within GFF7179at 43.059 kb on - strand, within GFF7179at 43.059 kb on - strand, within GFF7179at 43.059 kb on - strand, within GFF7179at 43.059 kb on - strand, within GFF7179at 43.064 kb on + strand, within GFF7179at 43.064 kb on + strand, within GFF7179at 43.064 kb on + strand, within GFF7179at 43.064 kb on + strand, within GFF7179at 43.064 kb on + strand, within GFF7179at 43.064 kb on + strand, within GFF7179at 43.064 kb on + strand, within GFF7179at 43.064 kb on + strand, within GFF7179at 43.064 kb on + strand, within GFF7179at 43.064 kb on + strand, within GFF7179at 43.064 kb on + strand, within GFF7179at 43.065 kb on - strand, within GFF7179at 43.065 kb on - strand, within GFF7179at 43.065 kb on - strand, within GFF7179at 43.065 kb on - strand, within GFF7179at 43.065 kb on - strand, within GFF7179at 43.065 kb on - strand, within GFF7179at 43.065 kb on - strand, within GFF7179at 43.065 kb on - strand, within GFF7179at 43.065 kb on - strand, within GFF7179at 43.065 kb on - strand, within GFF7179at 43.065 kb on - strand, within GFF7179at 43.065 kb on - strand, within GFF7179at 43.068 kb on - strand, within GFF7179at 43.068 kb on - strand, within GFF7179at 43.068 kb on - strand, within GFF7179at 43.547 kb on + strand, within GFF7179at 43.548 kb on - strand, within GFF7179at 43.607 kb on + strand, within GFF7179at 43.607 kb on + strand, within GFF7179at 43.607 kb on + strand, within GFF7179at 43.607 kb on + strand, within GFF7179at 43.608 kb on - strand, within GFF7179at 43.608 kb on - strand, within GFF7179at 43.608 kb on - strand, within GFF7179at 43.608 kb on - strand, within GFF7179at 43.608 kb on - strand, within GFF7179at 43.608 kb on - strand, within GFF7179at 43.610 kb on + strand, within GFF7179at 43.610 kb on + strand, within GFF7179at 43.610 kb on + strand, within GFF7179at 43.610 kb on + strand, within GFF7179at 43.610 kb on + strand, within GFF7179at 43.610 kb on + strand, within GFF7179at 43.610 kb on + strand, within GFF7179at 43.610 kb on + strand, within GFF7179at 43.610 kb on + strand, within GFF7179at 43.611 kb on - strand, within GFF7179at 43.611 kb on - strand, within GFF7179at 43.611 kb on - strand, within GFF7179at 43.611 kb on - strand, within GFF7179at 43.611 kb on - strand, within GFF7179at 43.611 kb on - strand, within GFF7179at 43.611 kb on - strand, within GFF7179at 43.611 kb on - strand, within GFF7179at 43.652 kb on + strand, within GFF7179at 43.725 kb on - strand, within GFF7179at 43.790 kb on + strand, within GFF7179at 43.790 kb on + strand, within GFF7179at 43.790 kb on + strand, within GFF7179at 43.790 kb on + strand, within GFF7179at 43.791 kb on - strand, within GFF7179at 43.791 kb on - strand, within GFF7179at 43.791 kb on - strand, within GFF7179at 43.791 kb on - strand, within GFF7179

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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41,702 - +0.1
41,748 + -0.3
41,795 + +0.3
41,795 + +0.3
41,795 + -0.7
41,795 + +0.6
41,796 - +0.6
41,796 - -0.1
41,796 - -1.4
42,064 + GFF7177 0.67 -0.5
42,064 + GFF7177 0.67 -0.7
42,064 + GFF7177 0.67 +0.4
42,064 + GFF7177 0.67 -0.3
42,064 + GFF7177 0.67 +1.3
42,064 + GFF7177 0.67 -0.2
42,064 + GFF7177 0.67 -0.1
42,064 + GFF7177 0.67 +0.2
42,065 - GFF7177 0.67 +1.7
42,065 - GFF7177 0.67 -0.9
42,065 - GFF7177 0.67 -0.6
42,065 - GFF7177 0.67 +0.1
42,065 - GFF7177 0.67 -0.5
42,065 - GFF7177 0.67 -0.2
42,065 - GFF7177 0.67 -1.1
42,065 - GFF7177 0.67 +0.4
42,065 - GFF7177 0.67 -0.7
42,065 - GFF7177 0.67 -0.6
42,065 - GFF7177 0.67 +1.3
42,413 + GFF7178 0.29 +2.0
42,723 + GFF7178 0.73 -0.8
42,750 + GFF7178 0.77 -0.9
42,751 - GFF7178 0.77 +1.3
42,849 + +0.1
42,849 + +0.3
42,849 + +1.3
42,850 - +0.0
42,850 - +0.1
42,850 - -0.4
42,938 + -0.1
42,939 - -0.4
42,939 - -0.0
42,939 - +0.2
42,939 - +0.4
42,939 - -0.0
42,939 - -0.4
43,043 + +0.6
43,044 - -1.1
43,044 - +0.3
43,058 + GFF7179 0.11 -0.1
43,058 + GFF7179 0.11 +0.0
43,058 + GFF7179 0.11 +0.1
43,058 + GFF7179 0.11 +0.5
43,058 + GFF7179 0.11 +0.0
43,058 + GFF7179 0.11 -0.3
43,058 + GFF7179 0.11 -0.9
43,058 + GFF7179 0.11 +0.2
43,058 + GFF7179 0.11 +0.9
43,058 + GFF7179 0.11 +0.3
43,058 + GFF7179 0.11 -0.1
43,058 + GFF7179 0.11 +0.1
43,058 + GFF7179 0.11 -0.5
43,058 + GFF7179 0.11 +0.6
43,058 + GFF7179 0.11 -0.9
43,058 + GFF7179 0.11 -1.0
43,058 + GFF7179 0.11 +0.3
43,058 + GFF7179 0.11 -0.7
43,058 + GFF7179 0.11 +0.6
43,059 - GFF7179 0.11 -1.4
43,059 - GFF7179 0.11 +0.3
43,059 - GFF7179 0.11 +0.6
43,059 - GFF7179 0.11 -0.1
43,059 - GFF7179 0.11 +0.4
43,059 - GFF7179 0.11 +0.9
43,059 - GFF7179 0.11 -0.2
43,059 - GFF7179 0.11 -1.3
43,059 - GFF7179 0.11 -0.7
43,059 - GFF7179 0.11 -0.7
43,059 - GFF7179 0.11 +0.3
43,059 - GFF7179 0.11 +0.2
43,059 - GFF7179 0.11 +0.2
43,064 + GFF7179 0.11 +0.2
43,064 + GFF7179 0.11 -1.0
43,064 + GFF7179 0.11 -0.3
43,064 + GFF7179 0.11 +0.4
43,064 + GFF7179 0.11 +0.2
43,064 + GFF7179 0.11 -0.2
43,064 + GFF7179 0.11 +0.5
43,064 + GFF7179 0.11 +1.0
43,064 + GFF7179 0.11 -0.2
43,064 + GFF7179 0.11 +0.2
43,064 + GFF7179 0.11 -0.4
43,065 - GFF7179 0.11 -0.8
43,065 - GFF7179 0.11 +0.3
43,065 - GFF7179 0.11 +0.7
43,065 - GFF7179 0.11 -0.7
43,065 - GFF7179 0.11 -0.4
43,065 - GFF7179 0.11 +0.5
43,065 - GFF7179 0.11 +1.4
43,065 - GFF7179 0.11 -0.4
43,065 - GFF7179 0.11 -0.9
43,065 - GFF7179 0.11 +0.1
43,065 - GFF7179 0.11 +0.2
43,065 - GFF7179 0.11 -0.3
43,068 - GFF7179 0.11 +0.2
43,068 - GFF7179 0.11 -0.4
43,068 - GFF7179 0.11 -0.1
43,547 + GFF7179 0.45 +1.5
43,548 - GFF7179 0.46 -0.3
43,607 + GFF7179 0.50 +0.3
43,607 + GFF7179 0.50 -2.3
43,607 + GFF7179 0.50 +0.5
43,607 + GFF7179 0.50 -0.6
43,608 - GFF7179 0.50 +0.2
43,608 - GFF7179 0.50 +0.8
43,608 - GFF7179 0.50 -0.3
43,608 - GFF7179 0.50 +0.3
43,608 - GFF7179 0.50 +1.0
43,608 - GFF7179 0.50 -0.8
43,610 + GFF7179 0.50 +0.4
43,610 + GFF7179 0.50 +0.7
43,610 + GFF7179 0.50 -1.3
43,610 + GFF7179 0.50 +0.4
43,610 + GFF7179 0.50 +0.0
43,610 + GFF7179 0.50 -0.0
43,610 + GFF7179 0.50 -0.1
43,610 + GFF7179 0.50 -0.9
43,610 + GFF7179 0.50 -0.0
43,611 - GFF7179 0.50 -0.1
43,611 - GFF7179 0.50 +0.5
43,611 - GFF7179 0.50 +0.2
43,611 - GFF7179 0.50 +0.0
43,611 - GFF7179 0.50 +0.1
43,611 - GFF7179 0.50 +2.5
43,611 - GFF7179 0.50 -0.3
43,611 - GFF7179 0.50 -0.3
43,652 + GFF7179 0.53 +0.6
43,725 - GFF7179 0.58 +1.6
43,790 + GFF7179 0.63 +0.0
43,790 + GFF7179 0.63 +0.4
43,790 + GFF7179 0.63 -0.0
43,790 + GFF7179 0.63 -0.2
43,791 - GFF7179 0.63 +0.5
43,791 - GFF7179 0.63 +0.9
43,791 - GFF7179 0.63 +0.3
43,791 - GFF7179 0.63 +1.7

Or see this region's nucleotide sequence