Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7100 and GFF7101 are separated by 2 nucleotides GFF7101 and GFF7102 are separated by 33 nucleotides GFF7102 and GFF7103 overlap by 4 nucleotides GFF7103 and GFF7104 overlap by 4 nucleotides
GFF7100 - similar to protocatechuate 4,5-dioxygenase beta chain, at 18,703 to 19,521
GFF7100
GFF7101 - hypothetical protein, at 19,524 to 19,850
GFF7101
GFF7102 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60), at 19,884 to 21,350
GFF7102
GFF7103 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-), at 21,347 to 22,096
GFF7103
GFF7104 - 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68), at 22,093 to 22,743
GFF7104
Position (kb) 19
20
21
22 Strain fitness (log2 ratio) -2
-1
0
1
2 at 19.212 kb on + strand, within GFF7100 at 19.295 kb on + strand, within GFF7100 at 19.296 kb on - strand, within GFF7100 at 19.296 kb on - strand, within GFF7100 at 19.430 kb on + strand, within GFF7100 at 19.431 kb on - strand, within GFF7100 at 19.431 kb on - strand, within GFF7100 at 19.431 kb on - strand, within GFF7100 at 19.525 kb on + strand at 19.526 kb on - strand at 19.526 kb on - strand at 19.591 kb on + strand, within GFF7101 at 19.592 kb on - strand, within GFF7101 at 19.624 kb on + strand, within GFF7101 at 19.624 kb on + strand, within GFF7101 at 19.624 kb on + strand, within GFF7101 at 19.625 kb on - strand, within GFF7101 at 19.625 kb on - strand, within GFF7101 at 19.625 kb on - strand, within GFF7101 at 19.625 kb on - strand, within GFF7101 at 19.665 kb on + strand, within GFF7101 at 19.666 kb on - strand, within GFF7101 at 19.666 kb on - strand, within GFF7101 at 19.666 kb on - strand, within GFF7101 at 19.693 kb on + strand, within GFF7101 at 19.693 kb on + strand, within GFF7101 at 19.694 kb on - strand, within GFF7101 at 19.694 kb on - strand, within GFF7101 at 19.694 kb on - strand, within GFF7101 at 19.694 kb on - strand, within GFF7101 at 19.694 kb on - strand, within GFF7101 at 19.694 kb on - strand, within GFF7101 at 19.717 kb on + strand, within GFF7101 at 19.730 kb on - strand, within GFF7101 at 19.751 kb on - strand, within GFF7101 at 19.835 kb on + strand at 19.836 kb on - strand at 19.840 kb on + strand at 19.840 kb on + strand at 19.840 kb on + strand at 19.840 kb on + strand at 19.841 kb on - strand at 19.841 kb on - strand at 19.841 kb on - strand at 19.841 kb on - strand at 19.958 kb on - strand at 19.958 kb on - strand at 19.958 kb on - strand at 19.958 kb on - strand at 19.958 kb on - strand at 19.958 kb on - strand at 20.113 kb on + strand, within GFF7102 at 20.113 kb on + strand, within GFF7102 at 20.129 kb on - strand, within GFF7102 at 20.353 kb on + strand, within GFF7102 at 20.353 kb on + strand, within GFF7102 at 20.354 kb on - strand, within GFF7102 at 20.354 kb on - strand, within GFF7102 at 20.354 kb on - strand, within GFF7102 at 20.354 kb on - strand, within GFF7102 at 20.476 kb on + strand, within GFF7102 at 20.654 kb on + strand, within GFF7102 at 20.953 kb on + strand, within GFF7102 at 20.953 kb on + strand, within GFF7102 at 20.954 kb on - strand, within GFF7102 at 20.954 kb on - strand, within GFF7102 at 20.954 kb on - strand, within GFF7102 at 20.954 kb on - strand, within GFF7102 at 20.977 kb on + strand, within GFF7102 at 20.977 kb on + strand, within GFF7102 at 21.016 kb on + strand, within GFF7102 at 21.016 kb on + strand, within GFF7102 at 21.017 kb on - strand, within GFF7102 at 21.017 kb on - strand, within GFF7102 at 21.066 kb on + strand, within GFF7102 at 21.066 kb on + strand, within GFF7102 at 21.066 kb on + strand, within GFF7102 at 21.066 kb on + strand, within GFF7102 at 21.066 kb on + strand, within GFF7102 at 21.066 kb on + strand, within GFF7102 at 21.067 kb on - strand, within GFF7102 at 21.067 kb on - strand, within GFF7102 at 21.067 kb on - strand, within GFF7102 at 21.067 kb on - strand, within GFF7102 at 21.292 kb on + strand at 21.292 kb on + strand at 21.293 kb on - strand at 21.486 kb on + strand, within GFF7103 at 21.487 kb on - strand, within GFF7103 at 21.667 kb on - strand, within GFF7103 at 21.681 kb on + strand, within GFF7103 at 21.696 kb on + strand, within GFF7103 at 21.697 kb on - strand, within GFF7103 at 21.726 kb on + strand, within GFF7103 at 21.726 kb on + strand, within GFF7103 at 21.726 kb on + strand, within GFF7103 at 21.726 kb on + strand, within GFF7103 at 21.726 kb on + strand, within GFF7103 at 21.727 kb on - strand, within GFF7103 at 21.727 kb on - strand, within GFF7103 at 21.727 kb on - strand, within GFF7103 at 21.727 kb on - strand, within GFF7103 at 21.727 kb on - strand, within GFF7103 at 21.727 kb on - strand, within GFF7103 at 21.727 kb on - strand, within GFF7103 at 21.727 kb on - strand, within GFF7103 at 21.727 kb on - strand, within GFF7103 at 21.732 kb on + strand, within GFF7103 at 21.732 kb on + strand, within GFF7103 at 21.732 kb on + strand, within GFF7103 at 21.732 kb on + strand, within GFF7103 at 21.732 kb on + strand, within GFF7103 at 21.732 kb on + strand, within GFF7103 at 21.733 kb on - strand, within GFF7103 at 21.733 kb on - strand, within GFF7103 at 21.733 kb on - strand, within GFF7103 at 21.733 kb on - strand, within GFF7103 at 21.733 kb on - strand, within GFF7103 at 21.795 kb on + strand, within GFF7103 at 21.796 kb on - strand, within GFF7103 at 21.796 kb on - strand, within GFF7103 at 21.796 kb on - strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.804 kb on + strand, within GFF7103 at 21.805 kb on - strand, within GFF7103 at 21.805 kb on - strand, within GFF7103 at 21.805 kb on - strand, within GFF7103 at 21.805 kb on - strand, within GFF7103 at 21.805 kb on - strand, within GFF7103 at 21.805 kb on - strand, within GFF7103 at 21.805 kb on - strand, within GFF7103 at 21.805 kb on - strand, within GFF7103 at 21.805 kb on - strand, within GFF7103 at 21.805 kb on - strand, within GFF7103 at 21.805 kb on - strand, within GFF7103 at 21.805 kb on - strand, within GFF7103 at 21.924 kb on + strand, within GFF7103 at 21.924 kb on + strand, within GFF7103 at 21.925 kb on - strand, within GFF7103 at 21.925 kb on - strand, within GFF7103 at 21.925 kb on - strand, within GFF7103 at 21.925 kb on - strand, within GFF7103 at 21.925 kb on - strand, within GFF7103 at 21.925 kb on - strand, within GFF7103 at 22.203 kb on + strand, within GFF7104 at 22.334 kb on - strand, within GFF7104
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 19,212 + GFF7100 0.62 -2.3 19,295 + GFF7100 0.72 -0.2 19,296 - GFF7100 0.72 -0.2 19,296 - GFF7100 0.72 -0.2 19,430 + GFF7100 0.89 -0.6 19,431 - GFF7100 0.89 -0.4 19,431 - GFF7100 0.89 -0.5 19,431 - GFF7100 0.89 +0.6 19,525 + -0.1 19,526 - -1.0 19,526 - -0.0 19,591 + GFF7101 0.20 -0.1 19,592 - GFF7101 0.21 +0.2 19,624 + GFF7101 0.31 +2.3 19,624 + GFF7101 0.31 -0.6 19,624 + GFF7101 0.31 +0.3 19,625 - GFF7101 0.31 -0.6 19,625 - GFF7101 0.31 -0.4 19,625 - GFF7101 0.31 +1.8 19,625 - GFF7101 0.31 +0.3 19,665 + GFF7101 0.43 +0.3 19,666 - GFF7101 0.43 -0.3 19,666 - GFF7101 0.43 +0.4 19,666 - GFF7101 0.43 -0.5 19,693 + GFF7101 0.52 +0.0 19,693 + GFF7101 0.52 -0.6 19,694 - GFF7101 0.52 -0.9 19,694 - GFF7101 0.52 -0.1 19,694 - GFF7101 0.52 +0.3 19,694 - GFF7101 0.52 -0.5 19,694 - GFF7101 0.52 -0.0 19,694 - GFF7101 0.52 -1.3 19,717 + GFF7101 0.59 -0.2 19,730 - GFF7101 0.63 -0.5 19,751 - GFF7101 0.69 +0.3 19,835 + -0.6 19,836 - +0.7 19,840 + -0.4 19,840 + +0.1 19,840 + -0.4 19,840 + +0.1 19,841 - -0.6 19,841 - -0.9 19,841 - +1.8 19,841 - +1.8 19,958 - -0.4 19,958 - -1.0 19,958 - -0.7 19,958 - -0.7 19,958 - -0.4 19,958 - -0.3 20,113 + GFF7102 0.16 -0.9 20,113 + GFF7102 0.16 -1.6 20,129 - GFF7102 0.17 -1.3 20,353 + GFF7102 0.32 -0.0 20,353 + GFF7102 0.32 -0.2 20,354 - GFF7102 0.32 -0.3 20,354 - GFF7102 0.32 -0.8 20,354 - GFF7102 0.32 -0.3 20,354 - GFF7102 0.32 -2.2 20,476 + GFF7102 0.40 -0.7 20,654 + GFF7102 0.52 -0.5 20,953 + GFF7102 0.73 +1.8 20,953 + GFF7102 0.73 -1.1 20,954 - GFF7102 0.73 -0.6 20,954 - GFF7102 0.73 -0.4 20,954 - GFF7102 0.73 +1.1 20,954 - GFF7102 0.73 -0.2 20,977 + GFF7102 0.75 +0.7 20,977 + GFF7102 0.75 +0.4 21,016 + GFF7102 0.77 -1.3 21,016 + GFF7102 0.77 -0.2 21,017 - GFF7102 0.77 -0.5 21,017 - GFF7102 0.77 -0.1 21,066 + GFF7102 0.81 -0.3 21,066 + GFF7102 0.81 +0.2 21,066 + GFF7102 0.81 -0.7 21,066 + GFF7102 0.81 -0.1 21,066 + GFF7102 0.81 -0.5 21,066 + GFF7102 0.81 -0.5 21,067 - GFF7102 0.81 +0.1 21,067 - GFF7102 0.81 -0.3 21,067 - GFF7102 0.81 -1.4 21,067 - GFF7102 0.81 +0.1 21,292 + -0.7 21,292 + -0.1 21,293 - +0.3 21,486 + GFF7103 0.19 -0.0 21,487 - GFF7103 0.19 -0.5 21,667 - GFF7103 0.43 +0.7 21,681 + GFF7103 0.45 -0.3 21,696 + GFF7103 0.47 -0.6 21,697 - GFF7103 0.47 +0.2 21,726 + GFF7103 0.51 -0.9 21,726 + GFF7103 0.51 +0.1 21,726 + GFF7103 0.51 -0.5 21,726 + GFF7103 0.51 -0.4 21,726 + GFF7103 0.51 +0.1 21,727 - GFF7103 0.51 +0.0 21,727 - GFF7103 0.51 -0.6 21,727 - GFF7103 0.51 -0.2 21,727 - GFF7103 0.51 +1.1 21,727 - GFF7103 0.51 -0.6 21,727 - GFF7103 0.51 +0.3 21,727 - GFF7103 0.51 -0.1 21,727 - GFF7103 0.51 -0.1 21,727 - GFF7103 0.51 -1.0 21,732 + GFF7103 0.51 -1.1 21,732 + GFF7103 0.51 +0.1 21,732 + GFF7103 0.51 +0.2 21,732 + GFF7103 0.51 +0.3 21,732 + GFF7103 0.51 -0.2 21,732 + GFF7103 0.51 -0.6 21,733 - GFF7103 0.51 +1.0 21,733 - GFF7103 0.51 +1.8 21,733 - GFF7103 0.51 -0.3 21,733 - GFF7103 0.51 +0.0 21,733 - GFF7103 0.51 -0.2 21,795 + GFF7103 0.60 +0.8 21,796 - GFF7103 0.60 +0.3 21,796 - GFF7103 0.60 -1.2 21,796 - GFF7103 0.60 -0.5 21,804 + GFF7103 0.61 -0.4 21,804 + GFF7103 0.61 -0.7 21,804 + GFF7103 0.61 -0.5 21,804 + GFF7103 0.61 -0.6 21,804 + GFF7103 0.61 -0.9 21,804 + GFF7103 0.61 -1.3 21,804 + GFF7103 0.61 -0.3 21,804 + GFF7103 0.61 -0.6 21,804 + GFF7103 0.61 -1.3 21,804 + GFF7103 0.61 -0.2 21,804 + GFF7103 0.61 +0.5 21,804 + GFF7103 0.61 +0.2 21,804 + GFF7103 0.61 -0.2 21,804 + GFF7103 0.61 -0.3 21,805 - GFF7103 0.61 -0.4 21,805 - GFF7103 0.61 -2.0 21,805 - GFF7103 0.61 -0.7 21,805 - GFF7103 0.61 -0.4 21,805 - GFF7103 0.61 -0.5 21,805 - GFF7103 0.61 -0.4 21,805 - GFF7103 0.61 -0.1 21,805 - GFF7103 0.61 -1.3 21,805 - GFF7103 0.61 -0.9 21,805 - GFF7103 0.61 +0.1 21,805 - GFF7103 0.61 +0.2 21,805 - GFF7103 0.61 +0.3 21,924 + GFF7103 0.77 -0.6 21,924 + GFF7103 0.77 -2.0 21,925 - GFF7103 0.77 +1.3 21,925 - GFF7103 0.77 -0.2 21,925 - GFF7103 0.77 +0.6 21,925 - GFF7103 0.77 -0.2 21,925 - GFF7103 0.77 +1.0 21,925 - GFF7103 0.77 -1.4 22,203 + GFF7104 0.17 -0.6 22,334 - GFF7104 0.37 +1.3
Or see this region's nucleotide sequence