Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7021 and GFF7022 overlap by 4 nucleotides GFF7022 and GFF7023 are separated by 7 nucleotides
GFF7021 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 38,084 to 39,121
GFF7021
GFF7022 - Amidohydrolase domain protein, at 39,118 to 40,794
GFF7022
GFF7023 - Metal chaperone, involved in Zn homeostasis, at 40,802 to 41,773
GFF7023
Position (kb) 39
40
41 Strain fitness (log2 ratio) -2
-1
0
1
2 at 38.723 kb on + strand, within GFF7021 at 38.724 kb on - strand, within GFF7021 at 38.787 kb on - strand, within GFF7021 at 38.787 kb on - strand, within GFF7021 at 38.787 kb on - strand, within GFF7021 at 38.787 kb on - strand, within GFF7021 at 38.849 kb on + strand, within GFF7021 at 38.849 kb on + strand, within GFF7021 at 38.850 kb on - strand, within GFF7021 at 39.142 kb on + strand at 39.142 kb on + strand at 39.358 kb on + strand, within GFF7022 at 39.359 kb on - strand, within GFF7022 at 39.359 kb on - strand, within GFF7022 at 39.359 kb on - strand, within GFF7022 at 39.359 kb on - strand, within GFF7022 at 39.520 kb on + strand, within GFF7022 at 39.521 kb on - strand, within GFF7022 at 39.521 kb on - strand, within GFF7022 at 40.147 kb on + strand, within GFF7022 at 40.168 kb on + strand, within GFF7022 at 40.169 kb on - strand, within GFF7022 at 40.169 kb on - strand, within GFF7022 at 40.378 kb on + strand, within GFF7022 at 40.378 kb on + strand, within GFF7022 at 40.396 kb on + strand, within GFF7022 at 40.396 kb on + strand, within GFF7022
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 38,723 + GFF7021 0.62 -2.1 38,724 - GFF7021 0.62 +0.1 38,787 - GFF7021 0.68 -0.3 38,787 - GFF7021 0.68 +0.3 38,787 - GFF7021 0.68 +0.1 38,787 - GFF7021 0.68 -0.2 38,849 + GFF7021 0.74 -0.7 38,849 + GFF7021 0.74 +0.3 38,850 - GFF7021 0.74 -0.3 39,142 + -0.6 39,142 + -0.1 39,358 + GFF7022 0.14 -0.4 39,359 - GFF7022 0.14 -0.7 39,359 - GFF7022 0.14 -0.6 39,359 - GFF7022 0.14 -0.6 39,359 - GFF7022 0.14 -0.9 39,520 + GFF7022 0.24 -0.2 39,521 - GFF7022 0.24 +0.4 39,521 - GFF7022 0.24 -0.2 40,147 + GFF7022 0.61 -1.4 40,168 + GFF7022 0.63 +1.8 40,169 - GFF7022 0.63 -0.0 40,169 - GFF7022 0.63 -0.4 40,378 + GFF7022 0.75 -0.2 40,378 + GFF7022 0.75 -0.4 40,396 + GFF7022 0.76 -0.3 40,396 + GFF7022 0.76 -1.2
Or see this region's nucleotide sequence