Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7011 and GFF7012 overlap by 8 nucleotides GFF7012 and GFF7013 are separated by 53 nucleotides GFF7013 and GFF7014 are separated by 177 nucleotides
GFF7011 - Taurine ABC transporter, permease protein TauC, at 26,614 to 27,510
GFF7011
GFF7012 - Taurine ABC transporter, ATP-binding protein TauB, at 27,503 to 28,291
GFF7012
GFF7013 - Taurine ABC transporter, substrate-binding protein TauA, at 28,345 to 29,355
GFF7013
GFF7014 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 29,533 to 31,068
GFF7014
Position (kb) 28
29
30 Strain fitness (log2 ratio) -2
-1
0
1
2 at 27.609 kb on + strand, within GFF7012 at 27.609 kb on + strand, within GFF7012 at 27.650 kb on - strand, within GFF7012 at 27.650 kb on - strand, within GFF7012 at 27.650 kb on - strand, within GFF7012 at 27.735 kb on + strand, within GFF7012 at 27.894 kb on + strand, within GFF7012 at 27.912 kb on + strand, within GFF7012 at 28.255 kb on - strand at 28.255 kb on - strand at 28.346 kb on + strand at 28.346 kb on + strand at 28.347 kb on - strand at 28.347 kb on - strand at 28.370 kb on + strand at 28.370 kb on + strand at 28.395 kb on - strand at 28.520 kb on + strand, within GFF7013 at 28.520 kb on + strand, within GFF7013 at 28.625 kb on + strand, within GFF7013 at 28.626 kb on - strand, within GFF7013 at 28.626 kb on - strand, within GFF7013 at 28.925 kb on + strand, within GFF7013 at 28.926 kb on - strand, within GFF7013 at 29.398 kb on - strand at 29.418 kb on - strand at 29.458 kb on + strand at 29.458 kb on + strand at 29.931 kb on - strand, within GFF7014 at 30.143 kb on + strand, within GFF7014
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 27,609 + GFF7012 0.13 -0.8 27,609 + GFF7012 0.13 -0.4 27,650 - GFF7012 0.19 -0.4 27,650 - GFF7012 0.19 -2.0 27,650 - GFF7012 0.19 +1.8 27,735 + GFF7012 0.29 +0.1 27,894 + GFF7012 0.50 +0.7 27,912 + GFF7012 0.52 +0.8 28,255 - -0.6 28,255 - -0.5 28,346 + -0.9 28,346 + -0.9 28,347 - +0.2 28,347 - -0.3 28,370 + -0.7 28,370 + +2.3 28,395 - +0.2 28,520 + GFF7013 0.17 -0.1 28,520 + GFF7013 0.17 -1.3 28,625 + GFF7013 0.28 -1.6 28,626 - GFF7013 0.28 -0.5 28,626 - GFF7013 0.28 -1.2 28,925 + GFF7013 0.57 -0.3 28,926 - GFF7013 0.57 -0.5 29,398 - +0.4 29,418 - -0.0 29,458 + -0.0 29,458 + -0.4 29,931 - GFF7014 0.26 -0.6 30,143 + GFF7014 0.40 -0.8
Or see this region's nucleotide sequence