Strain Fitness in Variovorax sp. SCN45 around GFF692

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF691 and GFF692 are separated by 155 nucleotidesGFF692 and GFF693 overlap by 4 nucleotides GFF691 - hypothetical protein, at 745,711 to 747,162 GFF691 GFF692 - BUG/TctC family periplasmic protein, at 747,318 to 748,313 GFF692 GFF693 - BUG/TctC family periplasmic protein, at 748,310 to 749,326 GFF693 Position (kb) 747 748 749Strain fitness (log2 ratio) -2 -1 0 1 2at 746.486 kb on + strand, within GFF691at 746.486 kb on + strand, within GFF691at 746.487 kb on - strand, within GFF691at 746.636 kb on + strand, within GFF691at 746.637 kb on - strand, within GFF691at 746.637 kb on - strand, within GFF691at 746.637 kb on - strand, within GFF691at 746.637 kb on - strand, within GFF691at 746.637 kb on - strand, within GFF691at 746.732 kb on + strand, within GFF691at 746.733 kb on - strand, within GFF691at 746.733 kb on - strand, within GFF691at 746.939 kb on + strand, within GFF691at 746.940 kb on - strand, within GFF691at 746.940 kb on - strand, within GFF691at 746.940 kb on - strand, within GFF691at 746.940 kb on - strand, within GFF691at 746.940 kb on - strand, within GFF691at 746.940 kb on - strand, within GFF691at 746.940 kb on - strand, within GFF691at 746.940 kb on - strand, within GFF691at 747.041 kb on + strandat 747.041 kb on + strandat 747.041 kb on + strandat 747.288 kb on + strandat 747.433 kb on + strand, within GFF692at 747.600 kb on + strand, within GFF692at 747.601 kb on - strand, within GFF692at 747.601 kb on - strand, within GFF692at 747.601 kb on - strand, within GFF692at 747.612 kb on + strand, within GFF692at 747.613 kb on - strand, within GFF692at 747.613 kb on - strand, within GFF692at 747.613 kb on - strand, within GFF692at 747.667 kb on - strand, within GFF692at 747.667 kb on - strand, within GFF692at 747.774 kb on + strand, within GFF692at 747.775 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.805 kb on - strand, within GFF692at 747.840 kb on + strand, within GFF692at 747.840 kb on + strand, within GFF692at 747.840 kb on + strand, within GFF692at 747.891 kb on + strand, within GFF692at 747.891 kb on + strand, within GFF692at 747.891 kb on + strand, within GFF692at 747.891 kb on + strand, within GFF692at 747.891 kb on + strand, within GFF692at 747.891 kb on + strand, within GFF692at 747.892 kb on - strand, within GFF692at 747.892 kb on - strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.942 kb on + strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 747.943 kb on - strand, within GFF692at 748.069 kb on - strand, within GFF692at 748.069 kb on - strand, within GFF692at 748.104 kb on + strand, within GFF692at 748.104 kb on + strand, within GFF692at 748.105 kb on - strand, within GFF692at 748.105 kb on - strand, within GFF692at 748.194 kb on + strand, within GFF692at 748.209 kb on + strand, within GFF692at 748.210 kb on - strand, within GFF692at 748.210 kb on - strand, within GFF692at 748.210 kb on - strand, within GFF692at 748.210 kb on - strand, within GFF692at 748.263 kb on + strandat 748.263 kb on + strandat 748.263 kb on + strandat 748.263 kb on + strandat 748.263 kb on + strandat 748.264 kb on - strandat 748.264 kb on - strandat 748.264 kb on - strandat 748.607 kb on + strand, within GFF693at 748.607 kb on + strand, within GFF693at 748.607 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.619 kb on + strand, within GFF693at 748.620 kb on - strand, within GFF693at 748.620 kb on - strand, within GFF693at 748.620 kb on - strand, within GFF693at 748.620 kb on - strand, within GFF693at 748.620 kb on - strand, within GFF693at 748.620 kb on - strand, within GFF693at 748.620 kb on - strand, within GFF693at 748.673 kb on + strand, within GFF693at 748.674 kb on - strand, within GFF693at 748.781 kb on + strand, within GFF693at 748.781 kb on + strand, within GFF693at 748.781 kb on + strand, within GFF693at 748.781 kb on + strand, within GFF693at 748.781 kb on + strand, within GFF693at 748.781 kb on + strand, within GFF693at 748.781 kb on + strand, within GFF693at 748.782 kb on - strand, within GFF693at 748.782 kb on - strand, within GFF693at 748.782 kb on - strand, within GFF693at 748.782 kb on - strand, within GFF693at 748.782 kb on - strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.811 kb on + strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.812 kb on - strand, within GFF693at 748.847 kb on + strand, within GFF693at 748.847 kb on + strand, within GFF693at 748.847 kb on + strand, within GFF693at 748.847 kb on + strand, within GFF693at 748.847 kb on + strand, within GFF693at 748.848 kb on - strand, within GFF693at 748.848 kb on - strand, within GFF693at 748.848 kb on - strand, within GFF693at 748.848 kb on - strand, within GFF693at 748.848 kb on - strand, within GFF693at 748.848 kb on - strand, within GFF693at 748.848 kb on - strand, within GFF693at 748.898 kb on + strand, within GFF693at 748.898 kb on + strand, within GFF693at 748.898 kb on + strand, within GFF693at 748.898 kb on + strand, within GFF693at 748.898 kb on + strand, within GFF693at 748.898 kb on + strand, within GFF693at 748.899 kb on - strand, within GFF693at 748.899 kb on - strand, within GFF693at 748.949 kb on + strand, within GFF693at 748.949 kb on + strand, within GFF693at 748.949 kb on + strand, within GFF693at 748.949 kb on + strand, within GFF693at 748.950 kb on - strand, within GFF693at 748.950 kb on - strand, within GFF693at 748.950 kb on - strand, within GFF693at 748.950 kb on - strand, within GFF693at 748.952 kb on + strand, within GFF693at 748.952 kb on + strand, within GFF693at 748.952 kb on + strand, within GFF693at 748.952 kb on + strand, within GFF693at 748.953 kb on - strand, within GFF693at 748.953 kb on - strand, within GFF693at 748.953 kb on - strand, within GFF693at 748.953 kb on - strand, within GFF693at 748.953 kb on - strand, within GFF693at 748.953 kb on - strand, within GFF693at 748.953 kb on - strand, within GFF693at 749.001 kb on + strand, within GFF693at 749.001 kb on + strand, within GFF693at 749.001 kb on + strand, within GFF693at 749.001 kb on + strand, within GFF693at 749.001 kb on + strand, within GFF693at 749.002 kb on - strand, within GFF693at 749.002 kb on - strand, within GFF693at 749.002 kb on - strand, within GFF693at 749.002 kb on - strand, within GFF693at 749.002 kb on - strand, within GFF693at 749.111 kb on + strand, within GFF693at 749.111 kb on + strand, within GFF693at 749.111 kb on + strand, within GFF693at 749.112 kb on - strand, within GFF693at 749.112 kb on - strand, within GFF693at 749.216 kb on + strand, within GFF693at 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.270 kb on + strandat 749.271 kb on - strandat 749.271 kb on - strandat 749.271 kb on - strandat 749.271 kb on - strandat 749.271 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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746,486 + GFF691 0.53 -0.1
746,486 + GFF691 0.53 -0.9
746,487 - GFF691 0.53 +0.3
746,636 + GFF691 0.64 -0.2
746,637 - GFF691 0.64 -0.0
746,637 - GFF691 0.64 -0.6
746,637 - GFF691 0.64 -1.6
746,637 - GFF691 0.64 -0.7
746,637 - GFF691 0.64 +1.6
746,732 + GFF691 0.70 -1.7
746,733 - GFF691 0.70 +0.3
746,733 - GFF691 0.70 +0.0
746,939 + GFF691 0.85 +0.6
746,940 - GFF691 0.85 -2.4
746,940 - GFF691 0.85 -1.8
746,940 - GFF691 0.85 -0.2
746,940 - GFF691 0.85 -1.3
746,940 - GFF691 0.85 -0.8
746,940 - GFF691 0.85 -1.1
746,940 - GFF691 0.85 -0.3
746,940 - GFF691 0.85 -0.6
747,041 + -0.1
747,041 + -0.1
747,041 + +1.1
747,288 + +1.0
747,433 + GFF692 0.12 -0.6
747,600 + GFF692 0.28 +0.6
747,601 - GFF692 0.28 +0.2
747,601 - GFF692 0.28 -0.1
747,601 - GFF692 0.28 +0.1
747,612 + GFF692 0.30 -0.2
747,613 - GFF692 0.30 -0.4
747,613 - GFF692 0.30 -0.5
747,613 - GFF692 0.30 +1.1
747,667 - GFF692 0.35 -0.9
747,667 - GFF692 0.35 -1.6
747,774 + GFF692 0.46 +1.1
747,775 - GFF692 0.46 -0.4
747,805 - GFF692 0.49 -0.5
747,805 - GFF692 0.49 +0.0
747,805 - GFF692 0.49 +0.2
747,805 - GFF692 0.49 -0.1
747,805 - GFF692 0.49 -0.5
747,805 - GFF692 0.49 -0.3
747,805 - GFF692 0.49 -0.6
747,805 - GFF692 0.49 +0.4
747,805 - GFF692 0.49 +0.8
747,805 - GFF692 0.49 -2.1
747,805 - GFF692 0.49 -1.1
747,805 - GFF692 0.49 +0.1
747,805 - GFF692 0.49 -1.7
747,805 - GFF692 0.49 +1.0
747,805 - GFF692 0.49 +0.3
747,805 - GFF692 0.49 -1.1
747,805 - GFF692 0.49 -0.8
747,805 - GFF692 0.49 +0.9
747,805 - GFF692 0.49 +0.3
747,840 + GFF692 0.52 -1.9
747,840 + GFF692 0.52 -0.5
747,840 + GFF692 0.52 -0.7
747,891 + GFF692 0.58 +0.2
747,891 + GFF692 0.58 -0.3
747,891 + GFF692 0.58 -1.0
747,891 + GFF692 0.58 +0.1
747,891 + GFF692 0.58 -0.6
747,891 + GFF692 0.58 +0.6
747,892 - GFF692 0.58 +0.4
747,892 - GFF692 0.58 -1.4
747,942 + GFF692 0.63 +0.6
747,942 + GFF692 0.63 -0.7
747,942 + GFF692 0.63 -0.2
747,942 + GFF692 0.63 -0.2
747,942 + GFF692 0.63 -0.0
747,942 + GFF692 0.63 -0.5
747,942 + GFF692 0.63 +0.2
747,942 + GFF692 0.63 +0.6
747,942 + GFF692 0.63 -0.3
747,942 + GFF692 0.63 -0.1
747,942 + GFF692 0.63 -0.7
747,943 - GFF692 0.63 -2.0
747,943 - GFF692 0.63 +0.4
747,943 - GFF692 0.63 -0.8
747,943 - GFF692 0.63 -0.3
747,943 - GFF692 0.63 -1.1
747,943 - GFF692 0.63 +0.6
747,943 - GFF692 0.63 -0.4
747,943 - GFF692 0.63 -0.3
747,943 - GFF692 0.63 -1.0
747,943 - GFF692 0.63 -0.7
748,069 - GFF692 0.75 -0.4
748,069 - GFF692 0.75 +0.0
748,104 + GFF692 0.79 +0.7
748,104 + GFF692 0.79 -0.0
748,105 - GFF692 0.79 -1.0
748,105 - GFF692 0.79 -0.8
748,194 + GFF692 0.88 -0.0
748,209 + GFF692 0.89 -0.0
748,210 - GFF692 0.90 +0.1
748,210 - GFF692 0.90 +0.6
748,210 - GFF692 0.90 -1.1
748,210 - GFF692 0.90 -1.1
748,263 + +0.6
748,263 + -0.4
748,263 + -0.7
748,263 + +1.2
748,263 + -2.4
748,264 - -0.2
748,264 - -0.7
748,264 - +0.9
748,607 + GFF693 0.29 +0.4
748,607 + GFF693 0.29 -0.3
748,607 + GFF693 0.29 -0.2
748,619 + GFF693 0.30 -0.2
748,619 + GFF693 0.30 -0.7
748,619 + GFF693 0.30 +0.0
748,619 + GFF693 0.30 -0.0
748,619 + GFF693 0.30 -0.2
748,619 + GFF693 0.30 -0.4
748,619 + GFF693 0.30 -0.5
748,619 + GFF693 0.30 +0.9
748,619 + GFF693 0.30 -0.3
748,619 + GFF693 0.30 +0.7
748,619 + GFF693 0.30 +0.4
748,619 + GFF693 0.30 -0.4
748,619 + GFF693 0.30 -1.6
748,619 + GFF693 0.30 +0.5
748,620 - GFF693 0.30 -0.3
748,620 - GFF693 0.30 +0.1
748,620 - GFF693 0.30 -0.8
748,620 - GFF693 0.30 -0.9
748,620 - GFF693 0.30 +0.2
748,620 - GFF693 0.30 -0.4
748,620 - GFF693 0.30 -0.5
748,673 + GFF693 0.36 -0.4
748,674 - GFF693 0.36 -0.4
748,781 + GFF693 0.46 -1.4
748,781 + GFF693 0.46 -0.2
748,781 + GFF693 0.46 -0.4
748,781 + GFF693 0.46 +0.4
748,781 + GFF693 0.46 +0.1
748,781 + GFF693 0.46 -1.0
748,781 + GFF693 0.46 -0.2
748,782 - GFF693 0.46 +1.6
748,782 - GFF693 0.46 -0.7
748,782 - GFF693 0.46 -0.1
748,782 - GFF693 0.46 +0.6
748,782 - GFF693 0.46 +0.3
748,811 + GFF693 0.49 -0.3
748,811 + GFF693 0.49 -1.2
748,811 + GFF693 0.49 -0.2
748,811 + GFF693 0.49 -0.2
748,811 + GFF693 0.49 -0.3
748,811 + GFF693 0.49 +0.0
748,811 + GFF693 0.49 -1.0
748,811 + GFF693 0.49 +0.7
748,811 + GFF693 0.49 -0.5
748,811 + GFF693 0.49 -0.2
748,811 + GFF693 0.49 -0.9
748,811 + GFF693 0.49 -0.4
748,811 + GFF693 0.49 +0.4
748,811 + GFF693 0.49 -0.3
748,812 - GFF693 0.49 +0.2
748,812 - GFF693 0.49 -0.6
748,812 - GFF693 0.49 +0.6
748,812 - GFF693 0.49 -0.3
748,812 - GFF693 0.49 +1.0
748,812 - GFF693 0.49 -0.4
748,812 - GFF693 0.49 -0.6
748,812 - GFF693 0.49 -0.6
748,812 - GFF693 0.49 -0.8
748,812 - GFF693 0.49 -0.5
748,812 - GFF693 0.49 -0.6
748,812 - GFF693 0.49 +0.0
748,847 + GFF693 0.53 -0.3
748,847 + GFF693 0.53 -0.6
748,847 + GFF693 0.53 +1.4
748,847 + GFF693 0.53 -0.3
748,847 + GFF693 0.53 +0.2
748,848 - GFF693 0.53 +1.3
748,848 - GFF693 0.53 -0.9
748,848 - GFF693 0.53 -0.7
748,848 - GFF693 0.53 +0.3
748,848 - GFF693 0.53 -0.7
748,848 - GFF693 0.53 +0.0
748,848 - GFF693 0.53 -0.4
748,898 + GFF693 0.58 +0.2
748,898 + GFF693 0.58 +0.1
748,898 + GFF693 0.58 +0.4
748,898 + GFF693 0.58 -1.1
748,898 + GFF693 0.58 +0.4
748,898 + GFF693 0.58 -0.2
748,899 - GFF693 0.58 +1.9
748,899 - GFF693 0.58 -0.2
748,949 + GFF693 0.63 -0.8
748,949 + GFF693 0.63 +0.3
748,949 + GFF693 0.63 -0.1
748,949 + GFF693 0.63 +1.1
748,950 - GFF693 0.63 -0.4
748,950 - GFF693 0.63 +0.4
748,950 - GFF693 0.63 +1.3
748,950 - GFF693 0.63 -1.0
748,952 + GFF693 0.63 -1.0
748,952 + GFF693 0.63 +0.1
748,952 + GFF693 0.63 -0.0
748,952 + GFF693 0.63 +0.7
748,953 - GFF693 0.63 -0.1
748,953 - GFF693 0.63 -0.6
748,953 - GFF693 0.63 -0.5
748,953 - GFF693 0.63 +0.0
748,953 - GFF693 0.63 +0.3
748,953 - GFF693 0.63 +0.8
748,953 - GFF693 0.63 -0.4
749,001 + GFF693 0.68 +0.6
749,001 + GFF693 0.68 -0.4
749,001 + GFF693 0.68 -0.6
749,001 + GFF693 0.68 -1.0
749,001 + GFF693 0.68 +0.0
749,002 - GFF693 0.68 -0.3
749,002 - GFF693 0.68 -0.1
749,002 - GFF693 0.68 +0.1
749,002 - GFF693 0.68 -0.4
749,002 - GFF693 0.68 -1.4
749,111 + GFF693 0.79 +2.2
749,111 + GFF693 0.79 -0.7
749,111 + GFF693 0.79 -0.9
749,112 - GFF693 0.79 +1.6
749,112 - GFF693 0.79 -1.5
749,216 + GFF693 0.89 -0.9
749,270 + -0.6
749,270 + +1.0
749,270 + +0.4
749,270 + -2.4
749,270 + -0.1
749,270 + -0.7
749,270 + -0.8
749,270 + -1.1
749,270 + -0.1
749,271 - -0.7
749,271 - -0.5
749,271 - +0.3
749,271 - +1.0
749,271 - +0.3

Or see this region's nucleotide sequence