Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6905 and GFF6906 are separated by 5 nucleotides GFF6906 and GFF6907 are separated by 44 nucleotides GFF6907 and GFF6908 overlap by 9 nucleotides GFF6908 and GFF6909 overlap by 4 nucleotides
GFF6905 - Chloride channel protein, at 40,014 to 41,783
GFF6905
GFF6906 - Transcriptional regulator, MarR family, at 41,789 to 42,214
GFF6906
GFF6907 - Acetyltransferase, GNAT family, at 42,259 to 42,867
GFF6907
GFF6908 - putative membrane protein, at 42,859 to 43,572
GFF6908
GFF6909 - Amidohydrolase, at 43,569 to 44,996
GFF6909
Position (kb) 42
43 Strain fitness (log2 ratio) -1
0
1
2 at 41.579 kb on + strand, within GFF6905 at 41.580 kb on - strand, within GFF6905 at 42.084 kb on + strand, within GFF6906 at 42.084 kb on + strand, within GFF6906 at 42.084 kb on + strand, within GFF6906 at 42.085 kb on - strand, within GFF6906 at 42.085 kb on - strand, within GFF6906 at 42.262 kb on + strand at 42.262 kb on + strand at 42.262 kb on + strand at 42.263 kb on - strand at 42.263 kb on - strand at 42.263 kb on - strand at 42.264 kb on + strand at 42.264 kb on + strand at 42.398 kb on - strand, within GFF6907 at 43.124 kb on + strand, within GFF6908 at 43.124 kb on + strand, within GFF6908 at 43.125 kb on - strand, within GFF6908 at 43.403 kb on + strand, within GFF6908 at 43.403 kb on + strand, within GFF6908 at 43.403 kb on + strand, within GFF6908 at 43.403 kb on + strand, within GFF6908 at 43.403 kb on + strand, within GFF6908 at 43.403 kb on + strand, within GFF6908 at 43.403 kb on + strand, within GFF6908 at 43.403 kb on + strand, within GFF6908 at 43.404 kb on - strand, within GFF6908 at 43.404 kb on - strand, within GFF6908 at 43.404 kb on - strand, within GFF6908 at 43.404 kb on - strand, within GFF6908 at 43.404 kb on - strand, within GFF6908 at 43.404 kb on - strand, within GFF6908 at 43.404 kb on - strand, within GFF6908 at 43.404 kb on - strand, within GFF6908 at 43.404 kb on - strand, within GFF6908 at 43.861 kb on + strand, within GFF6909
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 41,579 + GFF6905 0.88 -1.5 41,580 - GFF6905 0.88 -1.6 42,084 + GFF6906 0.69 +2.5 42,084 + GFF6906 0.69 +0.3 42,084 + GFF6906 0.69 -0.2 42,085 - GFF6906 0.69 +0.4 42,085 - GFF6906 0.69 -1.1 42,262 + +0.9 42,262 + -0.8 42,262 + +0.7 42,263 - +0.0 42,263 - -0.5 42,263 - -0.7 42,264 + -0.5 42,264 + +0.0 42,398 - GFF6907 0.23 +0.9 43,124 + GFF6908 0.37 -1.1 43,124 + GFF6908 0.37 -1.1 43,125 - GFF6908 0.37 -1.6 43,403 + GFF6908 0.76 -0.7 43,403 + GFF6908 0.76 -1.0 43,403 + GFF6908 0.76 -0.1 43,403 + GFF6908 0.76 +0.5 43,403 + GFF6908 0.76 -0.3 43,403 + GFF6908 0.76 +0.3 43,403 + GFF6908 0.76 +0.2 43,403 + GFF6908 0.76 +0.3 43,404 - GFF6908 0.76 +0.3 43,404 - GFF6908 0.76 -0.1 43,404 - GFF6908 0.76 -1.2 43,404 - GFF6908 0.76 +0.0 43,404 - GFF6908 0.76 -1.6 43,404 - GFF6908 0.76 +0.3 43,404 - GFF6908 0.76 +1.0 43,404 - GFF6908 0.76 -0.2 43,404 - GFF6908 0.76 +0.2 43,861 + GFF6909 0.20 +0.5
Or see this region's nucleotide sequence