Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6884 and GFF6885 are separated by 33 nucleotides GFF6885 and GFF6886 are separated by 91 nucleotides GFF6886 and GFF6887 are separated by 122 nucleotides GFF6887 and GFF6888 overlap by 4 nucleotides
GFF6884 - FIG00932717: hypothetical protein, at 17,301 to 18,593
GFF6884
GFF6885 - hypothetical protein, at 18,627 to 19,379
GFF6885
GFF6886 - DNA-binding transcriptional regulator, MocR family / aminotransferase domain, at 19,471 to 20,916
GFF6886
GFF6887 - Transporter, LysE family, at 21,039 to 21,638
GFF6887
GFF6888 - Permease of the drug/metabolite transporter (DMT) superfamily, at 21,635 to 22,618
GFF6888
Position (kb) 19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 18.481 kb on + strand at 18.482 kb on - strand at 18.612 kb on + strand at 18.612 kb on + strand at 18.612 kb on + strand at 18.612 kb on + strand at 18.612 kb on + strand at 18.612 kb on + strand at 18.612 kb on + strand at 18.612 kb on + strand at 18.612 kb on + strand at 18.612 kb on + strand at 18.612 kb on + strand at 18.613 kb on - strand at 18.613 kb on - strand at 18.613 kb on - strand at 18.613 kb on - strand at 18.613 kb on - strand at 18.613 kb on - strand at 18.613 kb on - strand at 18.614 kb on + strand at 18.614 kb on + strand at 18.614 kb on + strand at 18.615 kb on - strand at 18.615 kb on - strand at 18.615 kb on - strand at 18.615 kb on - strand at 18.615 kb on - strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.620 kb on + strand at 18.621 kb on - strand at 18.621 kb on - strand at 18.621 kb on - strand at 18.621 kb on - strand at 18.621 kb on - strand at 18.621 kb on - strand at 18.621 kb on - strand at 18.621 kb on - strand at 18.621 kb on - strand at 18.621 kb on - strand at 18.621 kb on - strand at 18.621 kb on - strand at 18.621 kb on - strand at 18.621 kb on - strand at 19.192 kb on + strand, within GFF6885 at 19.192 kb on + strand, within GFF6885 at 19.193 kb on - strand, within GFF6885 at 19.193 kb on - strand, within GFF6885 at 19.420 kb on + strand at 19.420 kb on + strand at 19.420 kb on + strand at 19.420 kb on + strand at 19.420 kb on + strand at 19.420 kb on + strand at 19.421 kb on - strand at 19.421 kb on - strand at 19.421 kb on - strand at 19.421 kb on - strand at 19.421 kb on - strand at 19.462 kb on + strand at 19.463 kb on - strand at 19.463 kb on - strand at 19.598 kb on + strand at 19.598 kb on + strand at 19.598 kb on + strand at 19.598 kb on + strand at 19.598 kb on + strand at 19.598 kb on + strand at 19.598 kb on + strand at 19.599 kb on - strand at 19.599 kb on - strand at 19.599 kb on - strand at 19.599 kb on - strand at 19.599 kb on - strand at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.937 kb on + strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 19.938 kb on - strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.003 kb on + strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.004 kb on - strand, within GFF6886 at 20.033 kb on + strand, within GFF6886 at 20.033 kb on + strand, within GFF6886 at 20.033 kb on + strand, within GFF6886 at 20.033 kb on + strand, within GFF6886 at 20.033 kb on + strand, within GFF6886 at 20.034 kb on - strand, within GFF6886 at 20.034 kb on - strand, within GFF6886 at 20.034 kb on - strand, within GFF6886 at 20.034 kb on - strand, within GFF6886 at 20.034 kb on - strand, within GFF6886 at 20.034 kb on - strand, within GFF6886 at 20.084 kb on + strand, within GFF6886 at 20.084 kb on + strand, within GFF6886 at 20.084 kb on + strand, within GFF6886 at 20.085 kb on - strand, within GFF6886 at 20.147 kb on + strand, within GFF6886 at 20.147 kb on + strand, within GFF6886 at 20.148 kb on - strand, within GFF6886 at 20.148 kb on - strand, within GFF6886 at 20.148 kb on - strand, within GFF6886 at 20.148 kb on - strand, within GFF6886 at 20.423 kb on + strand, within GFF6886 at 20.423 kb on + strand, within GFF6886 at 20.423 kb on + strand, within GFF6886 at 20.454 kb on + strand, within GFF6886 at 20.454 kb on + strand, within GFF6886 at 20.454 kb on + strand, within GFF6886 at 20.454 kb on + strand, within GFF6886 at 20.454 kb on + strand, within GFF6886 at 20.455 kb on - strand, within GFF6886 at 20.455 kb on - strand, within GFF6886 at 20.455 kb on - strand, within GFF6886 at 20.455 kb on - strand, within GFF6886 at 20.702 kb on + strand, within GFF6886 at 20.702 kb on + strand, within GFF6886 at 20.702 kb on + strand, within GFF6886 at 20.703 kb on - strand, within GFF6886 at 20.756 kb on + strand, within GFF6886 at 20.756 kb on + strand, within GFF6886 at 20.757 kb on - strand, within GFF6886 at 20.757 kb on - strand, within GFF6886 at 20.757 kb on - strand, within GFF6886 at 20.774 kb on + strand at 20.775 kb on - strand at 20.775 kb on - strand at 20.927 kb on - strand at 20.971 kb on + strand at 20.971 kb on + strand at 20.971 kb on + strand at 21.000 kb on + strand at 21.000 kb on + strand at 21.001 kb on - strand at 21.001 kb on - strand at 21.011 kb on + strand at 21.011 kb on + strand at 21.011 kb on + strand at 21.012 kb on - strand at 21.012 kb on - strand at 21.026 kb on + strand at 21.026 kb on + strand at 21.027 kb on - strand at 21.027 kb on - strand at 21.282 kb on + strand, within GFF6887 at 21.283 kb on - strand, within GFF6887 at 21.283 kb on - strand, within GFF6887 at 21.283 kb on - strand, within GFF6887 at 21.283 kb on - strand, within GFF6887 at 21.283 kb on - strand, within GFF6887 at 21.283 kb on - strand, within GFF6887 at 21.283 kb on - strand, within GFF6887 at 21.283 kb on - strand, within GFF6887 at 21.300 kb on + strand, within GFF6887 at 21.300 kb on + strand, within GFF6887 at 21.300 kb on + strand, within GFF6887 at 21.300 kb on + strand, within GFF6887 at 21.300 kb on + strand, within GFF6887 at 21.300 kb on + strand, within GFF6887 at 21.300 kb on + strand, within GFF6887 at 21.300 kb on + strand, within GFF6887 at 21.300 kb on + strand, within GFF6887 at 21.300 kb on + strand, within GFF6887 at 21.300 kb on + strand, within GFF6887 at 21.300 kb on + strand, within GFF6887 at 21.300 kb on + strand, within GFF6887 at 21.300 kb on + strand, within GFF6887 at 21.301 kb on - strand, within GFF6887 at 21.301 kb on - strand, within GFF6887 at 21.301 kb on - strand, within GFF6887 at 21.301 kb on - strand, within GFF6887 at 21.301 kb on - strand, within GFF6887 at 21.301 kb on - strand, within GFF6887 at 21.301 kb on - strand, within GFF6887 at 21.301 kb on - strand, within GFF6887 at 21.301 kb on - strand, within GFF6887 at 21.301 kb on - strand, within GFF6887 at 21.301 kb on - strand, within GFF6887 at 21.301 kb on - strand, within GFF6887 at 21.301 kb on - strand, within GFF6887 at 21.519 kb on + strand, within GFF6887 at 21.519 kb on + strand, within GFF6887 at 21.519 kb on + strand, within GFF6887 at 21.520 kb on - strand, within GFF6887 at 21.520 kb on - strand, within GFF6887 at 21.520 kb on - strand, within GFF6887 at 21.520 kb on - strand, within GFF6887 at 21.520 kb on - strand, within GFF6887 at 21.634 kb on + strand at 21.634 kb on + strand at 21.634 kb on + strand at 21.634 kb on + strand at 21.634 kb on + strand at 21.634 kb on + strand at 21.634 kb on + strand at 21.634 kb on + strand at 21.634 kb on + strand at 21.634 kb on + strand at 21.634 kb on + strand at 21.634 kb on + strand at 21.634 kb on + strand at 21.634 kb on + strand at 21.635 kb on - strand at 21.635 kb on - strand at 21.635 kb on - strand at 21.635 kb on - strand at 21.635 kb on - strand at 21.635 kb on - strand at 21.635 kb on - strand at 21.635 kb on - strand at 21.635 kb on - strand at 21.635 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 18,481 + +0.1 18,482 - -1.3 18,612 + +0.4 18,612 + -1.7 18,612 + -0.7 18,612 + -0.9 18,612 + -0.0 18,612 + -0.5 18,612 + +1.1 18,612 + -1.3 18,612 + -0.6 18,612 + -0.1 18,612 + -0.6 18,613 - +0.3 18,613 - +1.1 18,613 - -0.0 18,613 - +0.2 18,613 - +0.4 18,613 - -0.3 18,613 - +0.9 18,614 + -0.3 18,614 + -0.2 18,614 + -0.3 18,615 - -0.3 18,615 - -0.0 18,615 - -0.2 18,615 - -0.6 18,615 - -0.8 18,620 + -0.7 18,620 + -3.0 18,620 + -0.2 18,620 + -1.1 18,620 + -1.6 18,620 + +0.0 18,620 + -0.2 18,620 + -0.2 18,620 + -0.5 18,620 + -1.6 18,620 + +0.1 18,620 + -0.6 18,620 + -0.7 18,620 + -0.1 18,620 + -0.5 18,620 + -1.1 18,620 + +1.5 18,620 + -0.5 18,620 + -0.2 18,620 + -0.3 18,620 + -0.3 18,621 - -0.4 18,621 - -0.7 18,621 - +0.5 18,621 - -1.0 18,621 - +0.9 18,621 - -0.5 18,621 - +0.5 18,621 - -0.1 18,621 - -0.1 18,621 - +0.5 18,621 - -0.4 18,621 - -0.2 18,621 - -0.0 18,621 - -0.9 19,192 + GFF6885 0.75 +0.2 19,192 + GFF6885 0.75 +0.3 19,193 - GFF6885 0.75 +0.2 19,193 - GFF6885 0.75 -0.9 19,420 + -0.3 19,420 + +1.3 19,420 + -0.9 19,420 + +0.6 19,420 + -0.0 19,420 + -0.1 19,421 - +0.2 19,421 - +0.0 19,421 - +0.1 19,421 - +1.9 19,421 - -0.1 19,462 + -0.7 19,463 - -1.1 19,463 - +0.0 19,598 + -0.3 19,598 + +0.4 19,598 + -1.4 19,598 + +0.1 19,598 + +0.5 19,598 + -0.8 19,598 + -0.5 19,599 - +0.3 19,599 - +1.0 19,599 - -0.2 19,599 - -0.4 19,599 - -0.0 19,937 + GFF6886 0.32 +0.8 19,937 + GFF6886 0.32 -0.1 19,937 + GFF6886 0.32 +1.9 19,937 + GFF6886 0.32 -2.2 19,937 + GFF6886 0.32 -0.1 19,937 + GFF6886 0.32 +0.5 19,937 + GFF6886 0.32 -0.5 19,937 + GFF6886 0.32 -0.3 19,937 + GFF6886 0.32 +0.4 19,937 + GFF6886 0.32 +0.5 19,937 + GFF6886 0.32 +3.2 19,937 + GFF6886 0.32 -1.3 19,937 + GFF6886 0.32 -0.3 19,937 + GFF6886 0.32 +0.3 19,937 + GFF6886 0.32 -0.8 19,937 + GFF6886 0.32 -0.7 19,937 + GFF6886 0.32 +0.6 19,937 + GFF6886 0.32 -0.3 19,938 - GFF6886 0.32 -0.2 19,938 - GFF6886 0.32 -0.7 19,938 - GFF6886 0.32 -0.5 19,938 - GFF6886 0.32 -0.7 19,938 - GFF6886 0.32 +0.4 19,938 - GFF6886 0.32 +1.0 19,938 - GFF6886 0.32 +0.3 19,938 - GFF6886 0.32 -0.5 19,938 - GFF6886 0.32 -0.1 19,938 - GFF6886 0.32 +0.7 19,938 - GFF6886 0.32 +1.5 19,938 - GFF6886 0.32 -0.8 19,938 - GFF6886 0.32 +1.2 19,938 - GFF6886 0.32 -0.4 19,938 - GFF6886 0.32 +0.0 19,938 - GFF6886 0.32 -0.6 20,003 + GFF6886 0.37 -0.5 20,003 + GFF6886 0.37 -0.1 20,003 + GFF6886 0.37 +0.3 20,003 + GFF6886 0.37 -0.5 20,003 + GFF6886 0.37 +0.5 20,003 + GFF6886 0.37 +0.7 20,003 + GFF6886 0.37 +0.6 20,003 + GFF6886 0.37 -0.0 20,003 + GFF6886 0.37 +0.2 20,003 + GFF6886 0.37 -0.2 20,003 + GFF6886 0.37 -0.1 20,003 + GFF6886 0.37 +0.5 20,003 + GFF6886 0.37 +0.0 20,003 + GFF6886 0.37 -0.1 20,003 + GFF6886 0.37 -0.1 20,003 + GFF6886 0.37 -0.3 20,003 + GFF6886 0.37 -0.6 20,003 + GFF6886 0.37 -0.9 20,003 + GFF6886 0.37 -0.9 20,003 + GFF6886 0.37 -0.3 20,003 + GFF6886 0.37 +0.6 20,003 + GFF6886 0.37 -0.5 20,003 + GFF6886 0.37 -1.1 20,004 - GFF6886 0.37 +1.5 20,004 - GFF6886 0.37 +0.5 20,004 - GFF6886 0.37 +0.6 20,004 - GFF6886 0.37 +0.0 20,004 - GFF6886 0.37 +0.7 20,004 - GFF6886 0.37 +0.5 20,004 - GFF6886 0.37 -0.4 20,004 - GFF6886 0.37 +0.5 20,004 - GFF6886 0.37 +0.2 20,004 - GFF6886 0.37 -0.6 20,004 - GFF6886 0.37 +0.5 20,004 - GFF6886 0.37 +0.6 20,004 - GFF6886 0.37 -0.0 20,004 - GFF6886 0.37 +0.5 20,004 - GFF6886 0.37 -0.0 20,004 - GFF6886 0.37 -0.0 20,004 - GFF6886 0.37 +0.0 20,004 - GFF6886 0.37 -0.1 20,004 - GFF6886 0.37 +0.5 20,004 - GFF6886 0.37 +0.1 20,004 - GFF6886 0.37 +0.4 20,033 + GFF6886 0.39 -0.8 20,033 + GFF6886 0.39 +0.5 20,033 + GFF6886 0.39 -0.7 20,033 + GFF6886 0.39 -0.3 20,033 + GFF6886 0.39 +2.9 20,034 - GFF6886 0.39 -0.4 20,034 - GFF6886 0.39 -0.9 20,034 - GFF6886 0.39 +0.1 20,034 - GFF6886 0.39 +0.4 20,034 - GFF6886 0.39 +0.4 20,034 - GFF6886 0.39 +0.1 20,084 + GFF6886 0.42 -0.1 20,084 + GFF6886 0.42 +1.9 20,084 + GFF6886 0.42 +0.3 20,085 - GFF6886 0.42 -0.2 20,147 + GFF6886 0.47 +1.1 20,147 + GFF6886 0.47 +0.6 20,148 - GFF6886 0.47 -0.1 20,148 - GFF6886 0.47 -0.1 20,148 - GFF6886 0.47 +1.3 20,148 - GFF6886 0.47 -0.9 20,423 + GFF6886 0.66 -0.8 20,423 + GFF6886 0.66 +0.7 20,423 + GFF6886 0.66 -0.1 20,454 + GFF6886 0.68 -0.7 20,454 + GFF6886 0.68 -0.2 20,454 + GFF6886 0.68 +0.1 20,454 + GFF6886 0.68 -1.1 20,454 + GFF6886 0.68 +0.4 20,455 - GFF6886 0.68 -0.5 20,455 - GFF6886 0.68 -0.6 20,455 - GFF6886 0.68 -0.1 20,455 - GFF6886 0.68 -0.1 20,702 + GFF6886 0.85 -0.3 20,702 + GFF6886 0.85 +1.0 20,702 + GFF6886 0.85 -0.5 20,703 - GFF6886 0.85 -0.5 20,756 + GFF6886 0.89 +1.4 20,756 + GFF6886 0.89 +1.1 20,757 - GFF6886 0.89 -0.1 20,757 - GFF6886 0.89 -0.6 20,757 - GFF6886 0.89 +0.3 20,774 + -0.7 20,775 - -0.1 20,775 - -0.5 20,927 - -0.7 20,971 + -0.4 20,971 + -0.1 20,971 + +1.3 21,000 + +1.5 21,000 + +2.5 21,001 - +0.5 21,001 - -1.2 21,011 + +0.2 21,011 + +0.7 21,011 + +0.8 21,012 - -0.4 21,012 - -0.5 21,026 + -0.8 21,026 + +0.0 21,027 - +0.2 21,027 - -0.4 21,282 + GFF6887 0.41 -0.4 21,283 - GFF6887 0.41 +0.5 21,283 - GFF6887 0.41 -1.5 21,283 - GFF6887 0.41 -0.4 21,283 - GFF6887 0.41 -0.1 21,283 - GFF6887 0.41 -0.1 21,283 - GFF6887 0.41 -0.1 21,283 - GFF6887 0.41 +0.5 21,283 - GFF6887 0.41 -0.1 21,300 + GFF6887 0.43 +1.1 21,300 + GFF6887 0.43 -0.6 21,300 + GFF6887 0.43 +0.0 21,300 + GFF6887 0.43 +0.8 21,300 + GFF6887 0.43 -0.1 21,300 + GFF6887 0.43 +1.1 21,300 + GFF6887 0.43 -0.0 21,300 + GFF6887 0.43 +0.1 21,300 + GFF6887 0.43 +0.2 21,300 + GFF6887 0.43 -0.0 21,300 + GFF6887 0.43 -0.5 21,300 + GFF6887 0.43 -0.2 21,300 + GFF6887 0.43 -1.2 21,300 + GFF6887 0.43 +0.0 21,301 - GFF6887 0.44 -0.3 21,301 - GFF6887 0.44 +0.1 21,301 - GFF6887 0.44 +1.6 21,301 - GFF6887 0.44 -0.2 21,301 - GFF6887 0.44 -0.6 21,301 - GFF6887 0.44 +1.1 21,301 - GFF6887 0.44 -0.6 21,301 - GFF6887 0.44 -0.6 21,301 - GFF6887 0.44 -0.1 21,301 - GFF6887 0.44 -2.3 21,301 - GFF6887 0.44 +0.1 21,301 - GFF6887 0.44 -0.5 21,301 - GFF6887 0.44 +0.7 21,519 + GFF6887 0.80 -0.2 21,519 + GFF6887 0.80 -0.5 21,519 + GFF6887 0.80 -0.5 21,520 - GFF6887 0.80 -0.2 21,520 - GFF6887 0.80 +0.4 21,520 - GFF6887 0.80 +0.1 21,520 - GFF6887 0.80 -2.4 21,520 - GFF6887 0.80 +0.7 21,634 + -0.5 21,634 + -0.5 21,634 + -0.7 21,634 + -0.4 21,634 + -0.1 21,634 + -0.3 21,634 + +0.3 21,634 + -0.1 21,634 + -0.5 21,634 + -0.6 21,634 + -0.0 21,634 + -0.6 21,634 + -1.8 21,634 + -0.1 21,635 - +0.3 21,635 - +1.4 21,635 - -0.0 21,635 - -0.4 21,635 - -0.9 21,635 - +0.3 21,635 - +0.1 21,635 - -0.5 21,635 - -0.1 21,635 - -0.7
Or see this region's nucleotide sequence