Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6862 and GFF6863 are separated by 106 nucleotides GFF6863 and GFF6864 are separated by 100 nucleotides GFF6864 and GFF6865 are separated by 12 nucleotides
GFF6862 - Two-component system sensor histidine kinase, at 54,441 to 55,793
GFF6862
GFF6863 - DipZ protein, at 55,900 to 57,666
GFF6863
GFF6864 - hypothetical protein, at 57,767 to 58,141
GFF6864
GFF6865 - Transcriptional regulator, Crp/Fnr family, at 58,154 to 58,936
GFF6865
Position (kb) 55
56
57
58 Strain fitness (log2 ratio) -2
-1
0
1
2 at 54.955 kb on + strand, within GFF6862 at 54.955 kb on + strand, within GFF6862 at 54.956 kb on - strand, within GFF6862 at 54.988 kb on - strand, within GFF6862 at 55.147 kb on - strand, within GFF6862 at 55.147 kb on - strand, within GFF6862 at 55.311 kb on + strand, within GFF6862 at 55.311 kb on + strand, within GFF6862 at 55.312 kb on - strand, within GFF6862 at 55.312 kb on - strand, within GFF6862 at 55.312 kb on - strand, within GFF6862 at 55.312 kb on - strand, within GFF6862 at 55.393 kb on - strand, within GFF6862 at 55.624 kb on - strand, within GFF6862 at 55.767 kb on + strand at 55.767 kb on + strand at 55.768 kb on - strand at 55.768 kb on - strand at 55.768 kb on - strand at 55.768 kb on - strand at 55.768 kb on - strand at 55.768 kb on - strand at 55.921 kb on + strand at 55.921 kb on + strand at 56.107 kb on + strand, within GFF6863 at 56.116 kb on + strand, within GFF6863 at 56.116 kb on + strand, within GFF6863 at 56.812 kb on + strand, within GFF6863 at 56.812 kb on + strand, within GFF6863 at 56.813 kb on - strand, within GFF6863 at 56.813 kb on - strand, within GFF6863 at 56.813 kb on - strand, within GFF6863 at 56.813 kb on - strand, within GFF6863 at 56.845 kb on + strand, within GFF6863 at 56.846 kb on - strand, within GFF6863 at 56.846 kb on - strand, within GFF6863 at 56.869 kb on + strand, within GFF6863 at 56.869 kb on + strand, within GFF6863 at 56.869 kb on + strand, within GFF6863 at 56.869 kb on + strand, within GFF6863 at 56.869 kb on + strand, within GFF6863 at 56.869 kb on + strand, within GFF6863 at 56.870 kb on - strand, within GFF6863 at 56.998 kb on + strand, within GFF6863 at 56.998 kb on + strand, within GFF6863 at 56.998 kb on + strand, within GFF6863 at 56.998 kb on + strand, within GFF6863 at 56.999 kb on - strand, within GFF6863 at 56.999 kb on - strand, within GFF6863 at 57.028 kb on + strand, within GFF6863 at 57.029 kb on - strand, within GFF6863 at 57.044 kb on - strand, within GFF6863 at 57.235 kb on + strand, within GFF6863 at 57.235 kb on + strand, within GFF6863 at 57.235 kb on + strand, within GFF6863 at 57.236 kb on - strand, within GFF6863 at 57.236 kb on - strand, within GFF6863 at 57.236 kb on - strand, within GFF6863 at 57.245 kb on - strand, within GFF6863 at 57.304 kb on + strand, within GFF6863 at 57.555 kb on + strand at 57.568 kb on + strand at 57.568 kb on + strand at 57.569 kb on - strand at 57.646 kb on + strand at 57.646 kb on + strand at 57.686 kb on - strand at 57.686 kb on - strand at 57.707 kb on - strand at 57.707 kb on - strand at 57.707 kb on - strand at 57.785 kb on + strand at 57.785 kb on + strand at 57.785 kb on + strand at 57.785 kb on + strand at 57.785 kb on + strand at 57.785 kb on + strand at 57.785 kb on + strand at 57.785 kb on + strand at 57.785 kb on + strand at 57.785 kb on + strand at 57.785 kb on + strand at 57.786 kb on - strand at 57.786 kb on - strand at 57.786 kb on - strand at 57.786 kb on - strand at 57.786 kb on - strand at 57.786 kb on - strand at 57.786 kb on - strand at 57.786 kb on - strand at 57.786 kb on - strand at 57.914 kb on + strand, within GFF6864 at 57.914 kb on + strand, within GFF6864 at 57.914 kb on + strand, within GFF6864 at 57.914 kb on + strand, within GFF6864 at 57.915 kb on - strand, within GFF6864 at 57.915 kb on - strand, within GFF6864 at 57.915 kb on - strand, within GFF6864 at 57.915 kb on - strand, within GFF6864 at 58.405 kb on - strand, within GFF6865 at 58.405 kb on - strand, within GFF6865 at 58.638 kb on + strand, within GFF6865 at 58.639 kb on - strand, within GFF6865
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 54,955 + GFF6862 0.38 -1.1 54,955 + GFF6862 0.38 -0.7 54,956 - GFF6862 0.38 -2.6 54,988 - GFF6862 0.40 -2.1 55,147 - GFF6862 0.52 -1.4 55,147 - GFF6862 0.52 +0.6 55,311 + GFF6862 0.64 -0.5 55,311 + GFF6862 0.64 -0.6 55,312 - GFF6862 0.64 -1.2 55,312 - GFF6862 0.64 +1.2 55,312 - GFF6862 0.64 -1.0 55,312 - GFF6862 0.64 -0.2 55,393 - GFF6862 0.70 -0.5 55,624 - GFF6862 0.87 +0.0 55,767 + -0.8 55,767 + -0.9 55,768 - -0.1 55,768 - +0.4 55,768 - -0.7 55,768 - -0.2 55,768 - +0.2 55,768 - -0.5 55,921 + -1.3 55,921 + +0.1 56,107 + GFF6863 0.12 -1.0 56,116 + GFF6863 0.12 -1.5 56,116 + GFF6863 0.12 -0.6 56,812 + GFF6863 0.52 +0.1 56,812 + GFF6863 0.52 +0.5 56,813 - GFF6863 0.52 +0.6 56,813 - GFF6863 0.52 -0.6 56,813 - GFF6863 0.52 +2.6 56,813 - GFF6863 0.52 -0.4 56,845 + GFF6863 0.53 +1.2 56,846 - GFF6863 0.54 -0.7 56,846 - GFF6863 0.54 -0.4 56,869 + GFF6863 0.55 +0.8 56,869 + GFF6863 0.55 -0.6 56,869 + GFF6863 0.55 -0.9 56,869 + GFF6863 0.55 +0.6 56,869 + GFF6863 0.55 +1.3 56,869 + GFF6863 0.55 -0.4 56,870 - GFF6863 0.55 -1.3 56,998 + GFF6863 0.62 +0.9 56,998 + GFF6863 0.62 +1.1 56,998 + GFF6863 0.62 +0.2 56,998 + GFF6863 0.62 -0.0 56,999 - GFF6863 0.62 +0.7 56,999 - GFF6863 0.62 -0.1 57,028 + GFF6863 0.64 -0.2 57,029 - GFF6863 0.64 -0.1 57,044 - GFF6863 0.65 -1.2 57,235 + GFF6863 0.76 +0.1 57,235 + GFF6863 0.76 -0.1 57,235 + GFF6863 0.76 +1.0 57,236 - GFF6863 0.76 -0.1 57,236 - GFF6863 0.76 -0.4 57,236 - GFF6863 0.76 +1.1 57,245 - GFF6863 0.76 +0.2 57,304 + GFF6863 0.79 -0.2 57,555 + -0.3 57,568 + -1.3 57,568 + -0.9 57,569 - +0.2 57,646 + -0.5 57,646 + -1.9 57,686 - +0.3 57,686 - +1.0 57,707 - +0.3 57,707 - +0.8 57,707 - -1.3 57,785 + -0.1 57,785 + +0.7 57,785 + -0.2 57,785 + -0.6 57,785 + +0.9 57,785 + +0.7 57,785 + +1.0 57,785 + -0.5 57,785 + -0.5 57,785 + +1.2 57,785 + +0.2 57,786 - +0.4 57,786 - -0.1 57,786 - +0.5 57,786 - -1.1 57,786 - -0.2 57,786 - -0.9 57,786 - +0.4 57,786 - +0.2 57,786 - +0.6 57,914 + GFF6864 0.39 +0.0 57,914 + GFF6864 0.39 +1.1 57,914 + GFF6864 0.39 -1.5 57,914 + GFF6864 0.39 -0.3 57,915 - GFF6864 0.39 -0.3 57,915 - GFF6864 0.39 -0.2 57,915 - GFF6864 0.39 +0.6 57,915 - GFF6864 0.39 +0.0 58,405 - GFF6865 0.32 -0.4 58,405 - GFF6865 0.32 -0.4 58,638 + GFF6865 0.62 -0.0 58,639 - GFF6865 0.62 +0.0
Or see this region's nucleotide sequence