Strain Fitness in Variovorax sp. SCN45 around GFF6859

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6856 and GFF6857 are separated by 105 nucleotidesGFF6857 and GFF6858 are separated by 10 nucleotidesGFF6858 and GFF6859 are separated by 110 nucleotidesGFF6859 and GFF6860 are separated by 131 nucleotides GFF6856 - DipZ protein, at 51,122 to 51,772 GFF6856 GFF6857 - hypothetical protein, at 51,878 to 52,006 GFF6857 GFF6858 - no description, at 52,017 to 52,169 GFF6858 GFF6859 - Two-component transcriptional response regulator, OmpR family, at 52,280 to 53,020 GFF6859 GFF6860 - Epoxide hydrolase (EC 3.3.2.9), at 53,152 to 54,186 GFF6860 Position (kb) 52 53 54Strain fitness (log2 ratio) -2 -1 0 1 2at 51.425 kb on + strand, within GFF6856at 51.425 kb on + strand, within GFF6856at 51.425 kb on + strand, within GFF6856at 51.426 kb on - strand, within GFF6856at 51.426 kb on - strand, within GFF6856at 51.426 kb on - strand, within GFF6856at 51.426 kb on - strand, within GFF6856at 51.426 kb on - strand, within GFF6856at 51.426 kb on - strand, within GFF6856at 51.459 kb on - strand, within GFF6856at 51.459 kb on - strand, within GFF6856at 51.482 kb on + strand, within GFF6856at 51.483 kb on - strand, within GFF6856at 51.483 kb on - strand, within GFF6856at 51.483 kb on - strand, within GFF6856at 51.611 kb on + strand, within GFF6856at 51.612 kb on - strand, within GFF6856at 51.612 kb on - strand, within GFF6856at 51.612 kb on - strand, within GFF6856at 51.612 kb on - strand, within GFF6856at 51.642 kb on - strand, within GFF6856at 51.656 kb on + strand, within GFF6856at 51.657 kb on - strand, within GFF6856at 51.686 kb on + strand, within GFF6856at 51.687 kb on - strand, within GFF6856at 51.710 kb on + strandat 51.710 kb on + strandat 51.710 kb on + strandat 51.710 kb on + strandat 51.710 kb on + strandat 51.933 kb on + strand, within GFF6857at 51.934 kb on - strand, within GFF6857at 51.934 kb on - strand, within GFF6857at 51.934 kb on - strand, within GFF6857at 52.004 kb on + strandat 52.004 kb on + strandat 52.019 kb on - strandat 52.042 kb on + strand, within GFF6858at 52.094 kb on - strand, within GFF6858at 52.147 kb on + strand, within GFF6858at 52.147 kb on + strand, within GFF6858at 52.147 kb on + strand, within GFF6858at 52.148 kb on - strand, within GFF6858at 52.236 kb on + strandat 52.236 kb on + strandat 52.237 kb on - strandat 52.237 kb on - strandat 52.237 kb on - strandat 52.237 kb on - strandat 52.261 kb on + strandat 52.261 kb on + strandat 52.261 kb on + strandat 52.261 kb on + strandat 52.315 kb on - strandat 52.315 kb on - strandat 52.315 kb on - strandat 52.315 kb on - strandat 52.341 kb on + strandat 52.341 kb on + strandat 52.342 kb on - strandat 52.342 kb on - strandat 52.484 kb on + strand, within GFF6859at 52.485 kb on - strand, within GFF6859at 52.485 kb on - strand, within GFF6859at 52.485 kb on - strand, within GFF6859at 52.704 kb on + strand, within GFF6859at 52.704 kb on + strand, within GFF6859at 52.705 kb on - strand, within GFF6859at 52.705 kb on - strand, within GFF6859at 52.705 kb on - strand, within GFF6859at 52.705 kb on - strand, within GFF6859at 52.788 kb on + strand, within GFF6859at 52.788 kb on + strand, within GFF6859at 52.788 kb on + strand, within GFF6859at 52.788 kb on + strand, within GFF6859at 52.788 kb on + strand, within GFF6859at 52.788 kb on + strand, within GFF6859at 52.789 kb on - strand, within GFF6859at 52.789 kb on - strand, within GFF6859at 52.789 kb on - strand, within GFF6859at 52.789 kb on - strand, within GFF6859at 52.789 kb on - strand, within GFF6859at 52.789 kb on - strand, within GFF6859at 52.789 kb on - strand, within GFF6859at 52.947 kb on + strandat 52.947 kb on + strandat 52.947 kb on + strandat 52.948 kb on - strandat 52.948 kb on - strandat 52.948 kb on - strandat 52.948 kb on - strandat 53.065 kb on + strandat 53.065 kb on + strandat 53.066 kb on - strandat 53.098 kb on + strandat 53.098 kb on + strandat 53.098 kb on + strandat 53.098 kb on + strandat 53.098 kb on + strandat 53.099 kb on - strandat 53.099 kb on - strandat 53.099 kb on - strandat 53.099 kb on - strandat 53.099 kb on - strandat 53.099 kb on - strandat 53.133 kb on + strandat 53.133 kb on + strandat 53.133 kb on + strandat 53.133 kb on + strandat 53.134 kb on - strandat 53.134 kb on - strandat 53.134 kb on - strandat 53.134 kb on - strandat 53.134 kb on - strandat 53.220 kb on + strandat 53.220 kb on + strandat 53.220 kb on + strandat 53.220 kb on + strandat 53.220 kb on + strandat 53.221 kb on - strandat 53.221 kb on - strandat 53.221 kb on - strandat 53.221 kb on - strandat 53.221 kb on - strandat 53.221 kb on - strandat 53.221 kb on - strandat 53.373 kb on - strand, within GFF6860at 53.381 kb on + strand, within GFF6860at 53.381 kb on + strand, within GFF6860at 53.381 kb on + strand, within GFF6860at 53.381 kb on + strand, within GFF6860at 53.382 kb on - strand, within GFF6860at 53.382 kb on - strand, within GFF6860at 53.393 kb on - strand, within GFF6860at 53.420 kb on + strand, within GFF6860at 53.420 kb on + strand, within GFF6860at 53.445 kb on - strand, within GFF6860at 53.445 kb on - strand, within GFF6860at 53.445 kb on - strand, within GFF6860at 53.496 kb on - strand, within GFF6860at 53.496 kb on - strand, within GFF6860at 53.588 kb on + strand, within GFF6860at 53.589 kb on - strand, within GFF6860at 53.589 kb on - strand, within GFF6860at 53.589 kb on - strand, within GFF6860at 53.589 kb on - strand, within GFF6860at 53.589 kb on - strand, within GFF6860at 53.591 kb on + strand, within GFF6860at 53.591 kb on + strand, within GFF6860at 53.591 kb on + strand, within GFF6860at 53.591 kb on + strand, within GFF6860at 53.592 kb on - strand, within GFF6860at 53.592 kb on - strand, within GFF6860at 53.592 kb on - strand, within GFF6860at 53.597 kb on + strand, within GFF6860at 53.663 kb on + strand, within GFF6860at 53.663 kb on + strand, within GFF6860at 53.663 kb on + strand, within GFF6860at 53.664 kb on - strand, within GFF6860at 53.664 kb on - strand, within GFF6860at 53.664 kb on - strand, within GFF6860at 53.664 kb on - strand, within GFF6860at 53.664 kb on - strand, within GFF6860at 53.744 kb on + strand, within GFF6860at 53.745 kb on - strand, within GFF6860at 53.930 kb on + strand, within GFF6860at 53.930 kb on + strand, within GFF6860at 53.930 kb on + strand, within GFF6860at 53.930 kb on + strand, within GFF6860at 53.930 kb on + strand, within GFF6860at 53.931 kb on - strand, within GFF6860at 53.931 kb on - strand, within GFF6860at 53.931 kb on - strand, within GFF6860at 53.931 kb on - strand, within GFF6860at 53.931 kb on - strand, within GFF6860at 53.931 kb on - strand, within GFF6860at 53.951 kb on + strand, within GFF6860at 53.951 kb on + strand, within GFF6860at 53.999 kb on + strand, within GFF6860at 53.999 kb on + strand, within GFF6860at 53.999 kb on + strand, within GFF6860at 53.999 kb on + strand, within GFF6860at 54.002 kb on + strand, within GFF6860at 54.003 kb on - strand, within GFF6860

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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51,425 + GFF6856 0.47 -1.2
51,425 + GFF6856 0.47 +0.4
51,425 + GFF6856 0.47 -1.4
51,426 - GFF6856 0.47 -0.0
51,426 - GFF6856 0.47 -0.3
51,426 - GFF6856 0.47 +0.6
51,426 - GFF6856 0.47 +0.6
51,426 - GFF6856 0.47 +0.2
51,426 - GFF6856 0.47 +1.9
51,459 - GFF6856 0.52 -0.2
51,459 - GFF6856 0.52 -0.4
51,482 + GFF6856 0.55 -0.5
51,483 - GFF6856 0.55 -0.6
51,483 - GFF6856 0.55 -0.3
51,483 - GFF6856 0.55 +0.9
51,611 + GFF6856 0.75 -0.4
51,612 - GFF6856 0.75 -0.7
51,612 - GFF6856 0.75 +0.6
51,612 - GFF6856 0.75 -0.2
51,612 - GFF6856 0.75 +0.2
51,642 - GFF6856 0.80 -0.7
51,656 + GFF6856 0.82 -1.0
51,657 - GFF6856 0.82 -0.5
51,686 + GFF6856 0.87 +1.2
51,687 - GFF6856 0.87 -1.0
51,710 + +0.0
51,710 + -0.9
51,710 + -0.2
51,710 + -0.6
51,710 + -0.5
51,933 + GFF6857 0.43 -0.8
51,934 - GFF6857 0.43 -0.3
51,934 - GFF6857 0.43 -0.2
51,934 - GFF6857 0.43 -1.6
52,004 + -1.9
52,004 + +1.9
52,019 - +0.3
52,042 + GFF6858 0.16 -0.4
52,094 - GFF6858 0.50 +2.6
52,147 + GFF6858 0.85 +0.7
52,147 + GFF6858 0.85 -0.2
52,147 + GFF6858 0.85 +0.0
52,148 - GFF6858 0.86 -0.7
52,236 + +0.7
52,236 + -1.2
52,237 - -1.0
52,237 - +0.3
52,237 - +0.2
52,237 - -1.0
52,261 + -0.1
52,261 + -0.6
52,261 + -1.1
52,261 + -0.6
52,315 - -0.5
52,315 - +0.2
52,315 - +0.4
52,315 - +0.7
52,341 + +0.1
52,341 + -0.2
52,342 - -0.3
52,342 - -1.9
52,484 + GFF6859 0.28 -0.4
52,485 - GFF6859 0.28 +0.6
52,485 - GFF6859 0.28 +0.6
52,485 - GFF6859 0.28 -0.3
52,704 + GFF6859 0.57 -0.5
52,704 + GFF6859 0.57 -0.2
52,705 - GFF6859 0.57 -0.2
52,705 - GFF6859 0.57 -0.2
52,705 - GFF6859 0.57 -0.5
52,705 - GFF6859 0.57 -0.4
52,788 + GFF6859 0.69 +1.2
52,788 + GFF6859 0.69 -0.2
52,788 + GFF6859 0.69 -1.0
52,788 + GFF6859 0.69 -1.4
52,788 + GFF6859 0.69 -0.1
52,788 + GFF6859 0.69 +0.9
52,789 - GFF6859 0.69 -0.6
52,789 - GFF6859 0.69 -0.5
52,789 - GFF6859 0.69 -0.4
52,789 - GFF6859 0.69 +0.2
52,789 - GFF6859 0.69 -0.5
52,789 - GFF6859 0.69 +0.0
52,789 - GFF6859 0.69 -1.8
52,947 + -0.6
52,947 + +0.0
52,947 + +0.4
52,948 - -0.3
52,948 - -0.8
52,948 - -1.0
52,948 - -0.3
53,065 + +1.3
53,065 + -0.7
53,066 - +0.0
53,098 + +0.3
53,098 + +0.0
53,098 + +0.5
53,098 + -0.7
53,098 + -0.1
53,099 - +1.1
53,099 - +1.1
53,099 - +0.5
53,099 - -0.4
53,099 - -0.2
53,099 - -0.9
53,133 + -0.6
53,133 + -0.3
53,133 + -0.4
53,133 + -0.0
53,134 - +0.1
53,134 - +0.0
53,134 - -0.1
53,134 - -0.4
53,134 - -2.2
53,220 + +0.6
53,220 + -1.5
53,220 + +0.1
53,220 + -0.5
53,220 + -0.2
53,221 - +1.1
53,221 - +0.1
53,221 - -0.4
53,221 - -0.2
53,221 - -0.4
53,221 - -0.6
53,221 - +0.1
53,373 - GFF6860 0.21 -0.4
53,381 + GFF6860 0.22 +0.6
53,381 + GFF6860 0.22 -2.6
53,381 + GFF6860 0.22 +1.5
53,381 + GFF6860 0.22 -0.6
53,382 - GFF6860 0.22 +0.3
53,382 - GFF6860 0.22 +0.2
53,393 - GFF6860 0.23 -0.9
53,420 + GFF6860 0.26 -0.6
53,420 + GFF6860 0.26 +0.2
53,445 - GFF6860 0.28 +0.5
53,445 - GFF6860 0.28 +0.8
53,445 - GFF6860 0.28 +1.2
53,496 - GFF6860 0.33 -0.6
53,496 - GFF6860 0.33 -1.3
53,588 + GFF6860 0.42 +0.8
53,589 - GFF6860 0.42 -0.8
53,589 - GFF6860 0.42 -0.1
53,589 - GFF6860 0.42 +0.0
53,589 - GFF6860 0.42 +0.3
53,589 - GFF6860 0.42 +0.7
53,591 + GFF6860 0.42 -0.0
53,591 + GFF6860 0.42 +0.0
53,591 + GFF6860 0.42 +0.5
53,591 + GFF6860 0.42 +0.1
53,592 - GFF6860 0.43 -2.0
53,592 - GFF6860 0.43 -0.4
53,592 - GFF6860 0.43 -0.4
53,597 + GFF6860 0.43 -0.4
53,663 + GFF6860 0.49 -1.1
53,663 + GFF6860 0.49 +1.6
53,663 + GFF6860 0.49 -0.2
53,664 - GFF6860 0.49 +0.0
53,664 - GFF6860 0.49 +1.6
53,664 - GFF6860 0.49 -0.9
53,664 - GFF6860 0.49 -1.9
53,664 - GFF6860 0.49 -0.3
53,744 + GFF6860 0.57 -0.1
53,745 - GFF6860 0.57 +0.3
53,930 + GFF6860 0.75 -0.4
53,930 + GFF6860 0.75 -0.1
53,930 + GFF6860 0.75 -0.9
53,930 + GFF6860 0.75 -0.6
53,930 + GFF6860 0.75 +0.2
53,931 - GFF6860 0.75 +1.2
53,931 - GFF6860 0.75 +0.1
53,931 - GFF6860 0.75 -1.6
53,931 - GFF6860 0.75 +0.4
53,931 - GFF6860 0.75 -0.4
53,931 - GFF6860 0.75 -1.5
53,951 + GFF6860 0.77 -0.3
53,951 + GFF6860 0.77 -0.9
53,999 + GFF6860 0.82 -1.0
53,999 + GFF6860 0.82 -0.5
53,999 + GFF6860 0.82 -0.1
53,999 + GFF6860 0.82 -0.3
54,002 + GFF6860 0.82 -0.3
54,003 - GFF6860 0.82 +0.1

Or see this region's nucleotide sequence