Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF67 and GFF68 are separated by 31 nucleotides GFF68 and GFF69 overlap by 8 nucleotides GFF69 and GFF70 are separated by 28 nucleotides
GFF67 - Glycosyl transferase, group 1, at 83,706 to 84,938
GFF67
GFF68 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 84,970 to 86,088
GFF68
GFF69 - Two-component transcriptional response regulator, LuxR family, at 86,081 to 86,863
GFF69
GFF70 - Mannose-1-phosphate guanylyltransferase (EC 2.7.7.13) / Mannose-6-phosphate isomerase (EC 5.3.1.8), at 86,892 to 88,403
GFF70
Position (kb) 84
85
86
87 Strain fitness (log2 ratio) -2
-1
0
1 at 84.126 kb on + strand, within GFF67 at 84.126 kb on + strand, within GFF67 at 84.127 kb on - strand, within GFF67 at 84.408 kb on + strand, within GFF67 at 84.408 kb on + strand, within GFF67 at 84.409 kb on - strand, within GFF67 at 84.409 kb on - strand, within GFF67 at 84.861 kb on + strand at 85.052 kb on - strand at 85.052 kb on - strand at 85.052 kb on - strand at 85.265 kb on - strand, within GFF68 at 85.267 kb on + strand, within GFF68 at 85.360 kb on + strand, within GFF68 at 85.360 kb on + strand, within GFF68 at 85.361 kb on - strand, within GFF68 at 85.420 kb on + strand, within GFF68 at 85.420 kb on + strand, within GFF68 at 85.505 kb on - strand, within GFF68 at 85.582 kb on + strand, within GFF68 at 85.582 kb on + strand, within GFF68 at 85.583 kb on - strand, within GFF68 at 85.583 kb on - strand, within GFF68 at 85.616 kb on - strand, within GFF68 at 85.639 kb on + strand, within GFF68 at 85.672 kb on + strand, within GFF68 at 85.672 kb on + strand, within GFF68 at 85.673 kb on - strand, within GFF68 at 85.673 kb on - strand, within GFF68 at 86.286 kb on + strand, within GFF69 at 86.286 kb on + strand, within GFF69 at 86.286 kb on + strand, within GFF69 at 86.286 kb on + strand, within GFF69 at 86.508 kb on - strand, within GFF69 at 86.795 kb on + strand at 86.795 kb on + strand at 86.795 kb on + strand at 86.795 kb on + strand at 86.795 kb on + strand at 86.796 kb on - strand at 86.796 kb on - strand at 86.796 kb on - strand at 86.796 kb on - strand at 86.838 kb on - strand at 86.838 kb on - strand at 86.846 kb on + strand at 86.846 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 84,126 + GFF67 0.34 -0.1 84,126 + GFF67 0.34 -0.8 84,127 - GFF67 0.34 -0.5 84,408 + GFF67 0.57 -1.0 84,408 + GFF67 0.57 -0.9 84,409 - GFF67 0.57 -0.1 84,409 - GFF67 0.57 -0.1 84,861 + -1.2 85,052 - -0.0 85,052 - -0.5 85,052 - -1.1 85,265 - GFF68 0.26 +0.9 85,267 + GFF68 0.27 -0.4 85,360 + GFF68 0.35 +1.0 85,360 + GFF68 0.35 -0.7 85,361 - GFF68 0.35 +0.8 85,420 + GFF68 0.40 -0.5 85,420 + GFF68 0.40 -0.2 85,505 - GFF68 0.48 -0.4 85,582 + GFF68 0.55 +0.3 85,582 + GFF68 0.55 -1.6 85,583 - GFF68 0.55 +0.0 85,583 - GFF68 0.55 -0.7 85,616 - GFF68 0.58 -0.8 85,639 + GFF68 0.60 +0.6 85,672 + GFF68 0.63 +0.6 85,672 + GFF68 0.63 -0.6 85,673 - GFF68 0.63 -1.1 85,673 - GFF68 0.63 -1.0 86,286 + GFF69 0.26 +0.1 86,286 + GFF69 0.26 -0.0 86,286 + GFF69 0.26 -0.7 86,286 + GFF69 0.26 -1.1 86,508 - GFF69 0.55 -0.8 86,795 + -0.7 86,795 + +0.0 86,795 + -2.1 86,795 + -0.5 86,795 + -0.4 86,796 - +0.4 86,796 - -0.1 86,796 - -0.9 86,796 - -0.4 86,838 - -1.9 86,838 - -0.2 86,846 + +0.2 86,846 + -0.3
Or see this region's nucleotide sequence