Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6749 and GFF6750 are separated by 108 nucleotides GFF6750 and GFF6751 are separated by 29 nucleotides GFF6751 and GFF6752 overlap by 4 nucleotides
GFF6749 - hypothetical protein, at 62,972 to 63,421
GFF6749
GFF6750 - hypothetical protein, at 63,530 to 64,090
GFF6750
GFF6751 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 64,120 to 64,887
GFF6751
GFF6752 - 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase (EC 1.2.1.91) / 2-oxepin-2(3H)-ylideneacetyl-CoA hydrolase (EC 3.3.2.12), at 64,884 to 66,944
GFF6752
Position (kb) 64
65 Strain fitness (log2 ratio) -2
-1
0
1
2 at 63.432 kb on + strand at 63.432 kb on + strand at 63.432 kb on + strand at 63.432 kb on + strand at 63.433 kb on - strand at 63.433 kb on - strand at 63.433 kb on - strand at 63.433 kb on - strand at 63.484 kb on + strand at 63.485 kb on - strand at 63.485 kb on - strand at 63.504 kb on - strand at 63.504 kb on - strand at 63.505 kb on + strand at 63.505 kb on + strand at 63.505 kb on + strand at 63.505 kb on + strand at 63.505 kb on + strand at 63.505 kb on + strand at 63.532 kb on - strand at 63.570 kb on + strand at 63.570 kb on + strand at 63.570 kb on + strand at 63.570 kb on + strand at 63.571 kb on - strand at 63.725 kb on - strand, within GFF6750 at 63.725 kb on - strand, within GFF6750 at 63.725 kb on - strand, within GFF6750 at 63.726 kb on + strand, within GFF6750 at 63.726 kb on + strand, within GFF6750 at 63.726 kb on + strand, within GFF6750 at 63.726 kb on + strand, within GFF6750 at 63.726 kb on + strand, within GFF6750 at 63.727 kb on - strand, within GFF6750 at 63.727 kb on - strand, within GFF6750 at 63.727 kb on - strand, within GFF6750 at 63.727 kb on - strand, within GFF6750 at 63.727 kb on - strand, within GFF6750 at 63.727 kb on - strand, within GFF6750 at 63.727 kb on - strand, within GFF6750 at 63.990 kb on + strand, within GFF6750 at 64.035 kb on + strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.036 kb on - strand at 64.036 kb on - strand at 64.036 kb on - strand at 64.036 kb on - strand at 64.036 kb on - strand at 64.036 kb on - strand at 64.103 kb on + strand at 64.104 kb on - strand at 64.121 kb on + strand at 64.121 kb on + strand at 64.121 kb on + strand at 64.173 kb on - strand at 64.173 kb on - strand at 64.173 kb on - strand at 64.173 kb on - strand at 64.415 kb on + strand, within GFF6751 at 64.415 kb on + strand, within GFF6751 at 64.416 kb on - strand, within GFF6751 at 64.933 kb on + strand at 64.934 kb on - strand at 64.934 kb on - strand at 64.934 kb on - strand at 64.934 kb on - strand at 64.934 kb on - strand at 65.110 kb on + strand, within GFF6752 at 65.110 kb on + strand, within GFF6752 at 65.176 kb on + strand, within GFF6752 at 65.176 kb on + strand, within GFF6752 at 65.239 kb on + strand, within GFF6752 at 65.239 kb on + strand, within GFF6752 at 65.239 kb on + strand, within GFF6752 at 65.240 kb on - strand, within GFF6752 at 65.240 kb on - strand, within GFF6752 at 65.240 kb on - strand, within GFF6752 at 65.246 kb on - strand, within GFF6752 at 65.258 kb on + strand, within GFF6752 at 65.258 kb on + strand, within GFF6752 at 65.452 kb on + strand, within GFF6752 at 65.453 kb on - strand, within GFF6752 at 65.864 kb on - strand, within GFF6752
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 63,432 + -0.1 63,432 + -0.8 63,432 + +0.8 63,432 + -0.7 63,433 - +0.2 63,433 - -1.6 63,433 - +0.9 63,433 - +0.2 63,484 + +0.3 63,485 - +0.1 63,485 - +0.3 63,504 - -0.3 63,504 - -0.6 63,505 + +0.1 63,505 + +1.8 63,505 + +1.2 63,505 + +2.3 63,505 + -1.2 63,505 + +0.3 63,532 - -0.5 63,570 + -0.9 63,570 + -0.4 63,570 + -0.8 63,570 + +0.9 63,571 - -1.0 63,725 - GFF6750 0.35 -0.7 63,725 - GFF6750 0.35 +0.3 63,725 - GFF6750 0.35 -0.1 63,726 + GFF6750 0.35 +0.1 63,726 + GFF6750 0.35 -0.1 63,726 + GFF6750 0.35 +0.1 63,726 + GFF6750 0.35 -1.3 63,726 + GFF6750 0.35 -0.5 63,727 - GFF6750 0.35 +0.1 63,727 - GFF6750 0.35 +1.2 63,727 - GFF6750 0.35 +0.3 63,727 - GFF6750 0.35 +0.5 63,727 - GFF6750 0.35 +0.5 63,727 - GFF6750 0.35 -0.1 63,727 - GFF6750 0.35 -0.9 63,990 + GFF6750 0.82 +0.3 64,035 + -1.2 64,035 + -0.6 64,035 + -0.4 64,035 + -0.4 64,035 + +1.0 64,035 + -0.8 64,035 + +0.5 64,035 + -0.1 64,035 + -0.6 64,035 + -0.1 64,035 + -0.5 64,035 + -0.3 64,036 - +0.2 64,036 - -0.8 64,036 - +0.4 64,036 - +0.2 64,036 - +0.4 64,036 - -1.1 64,103 + -0.7 64,104 - +1.0 64,121 + -1.4 64,121 + -0.6 64,121 + -0.5 64,173 - +0.8 64,173 - +0.4 64,173 - +0.3 64,173 - -0.2 64,415 + GFF6751 0.38 -0.2 64,415 + GFF6751 0.38 -0.8 64,416 - GFF6751 0.39 -0.7 64,933 + -0.1 64,934 - -0.3 64,934 - +0.8 64,934 - -0.7 64,934 - +0.1 64,934 - -1.8 65,110 + GFF6752 0.11 -0.4 65,110 + GFF6752 0.11 +1.8 65,176 + GFF6752 0.14 +1.1 65,176 + GFF6752 0.14 +0.2 65,239 + GFF6752 0.17 +0.3 65,239 + GFF6752 0.17 +1.2 65,239 + GFF6752 0.17 -0.6 65,240 - GFF6752 0.17 +0.0 65,240 - GFF6752 0.17 +0.2 65,240 - GFF6752 0.17 -0.2 65,246 - GFF6752 0.18 -1.7 65,258 + GFF6752 0.18 -0.8 65,258 + GFF6752 0.18 -0.9 65,452 + GFF6752 0.28 -0.8 65,453 - GFF6752 0.28 -0.7 65,864 - GFF6752 0.48 -0.1
Or see this region's nucleotide sequence