Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6655 and GFF6656 are separated by 341 nucleotides GFF6656 and GFF6657 are separated by 60 nucleotides GFF6657 and GFF6658 are separated by 10 nucleotides
GFF6655 - Transcriptional regulator, GntR family, at 28,970 to 29,665
GFF6655
GFF6656 - hypothetical protein, at 30,007 to 30,372
GFF6656
GFF6657 - Outer membrane factor (OMF) lipoprotein associated wth MdtABC efflux system, at 30,433 to 31,926
GFF6657
GFF6658 - Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtC (RND type), at 31,937 to 35,227
GFF6658
Position (kb) 30
31
32 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 29.508 kb on + strand, within GFF6655 at 29.508 kb on + strand, within GFF6655 at 29.508 kb on + strand, within GFF6655 at 29.508 kb on + strand, within GFF6655 at 29.508 kb on + strand, within GFF6655 at 29.509 kb on - strand, within GFF6655 at 29.509 kb on - strand, within GFF6655 at 29.509 kb on - strand, within GFF6655 at 29.509 kb on - strand, within GFF6655 at 29.509 kb on - strand, within GFF6655 at 29.509 kb on - strand, within GFF6655 at 29.509 kb on - strand, within GFF6655 at 29.509 kb on - strand, within GFF6655 at 29.509 kb on - strand, within GFF6655 at 29.650 kb on + strand at 29.650 kb on + strand at 29.651 kb on - strand at 29.651 kb on - strand at 29.651 kb on - strand at 29.744 kb on + strand at 29.744 kb on + strand at 29.745 kb on - strand at 29.745 kb on - strand at 29.768 kb on - strand at 29.813 kb on + strand at 29.813 kb on + strand at 29.813 kb on + strand at 29.814 kb on - strand at 29.814 kb on - strand at 29.814 kb on - strand at 29.814 kb on - strand at 29.814 kb on - strand at 29.814 kb on - strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.861 kb on + strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.862 kb on - strand at 29.878 kb on + strand at 29.878 kb on + strand at 29.878 kb on + strand at 29.878 kb on + strand at 29.878 kb on + strand at 29.878 kb on + strand at 29.878 kb on + strand at 29.879 kb on - strand at 29.879 kb on - strand at 29.879 kb on - strand at 29.879 kb on - strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.881 kb on + strand at 29.882 kb on - strand at 29.882 kb on - strand at 29.882 kb on - strand at 29.882 kb on - strand at 29.882 kb on - strand at 29.882 kb on - strand at 29.882 kb on - strand at 29.882 kb on - strand at 29.882 kb on - strand at 29.882 kb on - strand at 29.882 kb on - strand at 29.882 kb on - strand at 29.882 kb on - strand at 29.907 kb on + strand at 29.908 kb on - strand at 29.933 kb on + strand at 29.933 kb on + strand at 29.933 kb on + strand at 29.934 kb on - strand at 29.956 kb on + strand at 29.999 kb on + strand at 30.000 kb on - strand at 30.000 kb on - strand at 30.337 kb on + strand at 30.337 kb on + strand at 30.337 kb on + strand at 30.337 kb on + strand at 30.338 kb on - strand at 30.338 kb on - strand at 30.338 kb on - strand at 30.338 kb on - strand at 30.338 kb on - strand at 30.338 kb on - strand at 30.338 kb on - strand at 30.633 kb on - strand, within GFF6657 at 30.633 kb on - strand, within GFF6657 at 30.633 kb on - strand, within GFF6657 at 30.633 kb on - strand, within GFF6657 at 30.633 kb on - strand, within GFF6657 at 30.654 kb on - strand, within GFF6657 at 30.654 kb on - strand, within GFF6657 at 30.707 kb on + strand, within GFF6657 at 30.707 kb on + strand, within GFF6657 at 30.707 kb on + strand, within GFF6657 at 30.708 kb on - strand, within GFF6657 at 30.708 kb on - strand, within GFF6657 at 30.708 kb on - strand, within GFF6657 at 30.708 kb on - strand, within GFF6657 at 30.708 kb on - strand, within GFF6657 at 30.708 kb on - strand, within GFF6657 at 30.791 kb on + strand, within GFF6657 at 30.792 kb on - strand, within GFF6657 at 30.812 kb on + strand, within GFF6657 at 30.812 kb on + strand, within GFF6657 at 30.812 kb on + strand, within GFF6657 at 30.812 kb on + strand, within GFF6657 at 30.812 kb on + strand, within GFF6657 at 30.813 kb on - strand, within GFF6657 at 30.813 kb on - strand, within GFF6657 at 30.813 kb on - strand, within GFF6657 at 30.813 kb on - strand, within GFF6657 at 30.977 kb on + strand, within GFF6657 at 30.978 kb on - strand, within GFF6657 at 30.978 kb on - strand, within GFF6657 at 30.978 kb on - strand, within GFF6657 at 30.978 kb on - strand, within GFF6657 at 30.978 kb on - strand, within GFF6657 at 31.274 kb on + strand, within GFF6657 at 31.274 kb on + strand, within GFF6657 at 31.275 kb on - strand, within GFF6657 at 31.295 kb on + strand, within GFF6657 at 31.295 kb on + strand, within GFF6657 at 31.295 kb on + strand, within GFF6657 at 31.295 kb on + strand, within GFF6657 at 31.295 kb on + strand, within GFF6657 at 31.295 kb on + strand, within GFF6657 at 31.295 kb on + strand, within GFF6657 at 31.295 kb on + strand, within GFF6657 at 31.295 kb on + strand, within GFF6657 at 31.295 kb on + strand, within GFF6657 at 31.295 kb on + strand, within GFF6657 at 31.295 kb on + strand, within GFF6657 at 31.296 kb on - strand, within GFF6657 at 31.296 kb on - strand, within GFF6657 at 31.296 kb on - strand, within GFF6657 at 31.296 kb on - strand, within GFF6657 at 31.296 kb on - strand, within GFF6657 at 31.296 kb on - strand, within GFF6657 at 31.296 kb on - strand, within GFF6657 at 31.296 kb on - strand, within GFF6657 at 31.296 kb on - strand, within GFF6657 at 31.296 kb on - strand, within GFF6657 at 31.296 kb on - strand, within GFF6657 at 31.296 kb on - strand, within GFF6657 at 31.307 kb on + strand, within GFF6657 at 31.307 kb on + strand, within GFF6657 at 31.307 kb on + strand, within GFF6657 at 31.307 kb on + strand, within GFF6657 at 31.308 kb on - strand, within GFF6657 at 31.308 kb on - strand, within GFF6657 at 31.308 kb on - strand, within GFF6657 at 31.308 kb on - strand, within GFF6657 at 31.367 kb on + strand, within GFF6657 at 31.368 kb on - strand, within GFF6657 at 31.368 kb on - strand, within GFF6657 at 31.628 kb on + strand, within GFF6657 at 31.628 kb on + strand, within GFF6657 at 31.628 kb on + strand, within GFF6657 at 31.628 kb on + strand, within GFF6657 at 31.628 kb on + strand, within GFF6657 at 31.628 kb on + strand, within GFF6657 at 31.629 kb on - strand, within GFF6657 at 31.629 kb on - strand, within GFF6657 at 31.629 kb on - strand, within GFF6657 at 31.629 kb on - strand, within GFF6657 at 31.629 kb on - strand, within GFF6657 at 31.629 kb on - strand, within GFF6657 at 31.629 kb on - strand, within GFF6657 at 31.669 kb on + strand, within GFF6657 at 31.669 kb on + strand, within GFF6657 at 31.670 kb on - strand, within GFF6657 at 31.670 kb on - strand, within GFF6657 at 31.670 kb on - strand, within GFF6657 at 31.670 kb on - strand, within GFF6657 at 31.820 kb on + strand at 31.820 kb on + strand at 31.820 kb on + strand at 31.820 kb on + strand at 31.820 kb on + strand at 31.820 kb on + strand at 31.820 kb on + strand at 31.821 kb on - strand at 32.007 kb on + strand at 32.007 kb on + strand at 32.007 kb on + strand at 32.410 kb on - strand, within GFF6658 at 32.410 kb on - strand, within GFF6658 at 32.410 kb on - strand, within GFF6658 at 32.430 kb on + strand, within GFF6658 at 32.430 kb on + strand, within GFF6658 at 32.430 kb on + strand, within GFF6658 at 32.430 kb on + strand, within GFF6658 at 32.430 kb on + strand, within GFF6658 at 32.430 kb on + strand, within GFF6658 at 32.430 kb on + strand, within GFF6658 at 32.430 kb on + strand, within GFF6658 at 32.431 kb on - strand, within GFF6658 at 32.431 kb on - strand, within GFF6658 at 32.431 kb on - strand, within GFF6658 at 32.431 kb on - strand, within GFF6658 at 32.431 kb on - strand, within GFF6658 at 32.431 kb on - strand, within GFF6658 at 32.431 kb on - strand, within GFF6658 at 32.431 kb on - strand, within GFF6658 at 32.431 kb on - strand, within GFF6658 at 32.431 kb on - strand, within GFF6658 at 32.431 kb on - strand, within GFF6658 at 32.431 kb on - strand, within GFF6658 at 32.431 kb on - strand, within GFF6658 at 32.431 kb on - strand, within GFF6658 at 32.668 kb on - strand, within GFF6658 at 32.913 kb on + strand, within GFF6658 at 32.913 kb on + strand, within GFF6658 at 32.913 kb on + strand, within GFF6658 at 32.913 kb on + strand, within GFF6658 at 32.913 kb on + strand, within GFF6658 at 32.913 kb on + strand, within GFF6658 at 32.913 kb on + strand, within GFF6658 at 32.913 kb on + strand, within GFF6658 at 32.913 kb on + strand, within GFF6658 at 32.913 kb on + strand, within GFF6658 at 32.913 kb on + strand, within GFF6658 at 32.913 kb on + strand, within GFF6658 at 32.913 kb on + strand, within GFF6658 at 32.913 kb on + strand, within GFF6658 at 32.914 kb on - strand, within GFF6658 at 32.914 kb on - strand, within GFF6658 at 32.914 kb on - strand, within GFF6658 at 32.914 kb on - strand, within GFF6658 at 32.914 kb on - strand, within GFF6658 at 32.914 kb on - strand, within GFF6658
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 29,508 + GFF6655 0.77 -0.9 29,508 + GFF6655 0.77 -0.5 29,508 + GFF6655 0.77 +0.3 29,508 + GFF6655 0.77 -0.9 29,508 + GFF6655 0.77 +1.1 29,509 - GFF6655 0.77 +2.6 29,509 - GFF6655 0.77 -0.7 29,509 - GFF6655 0.77 -0.8 29,509 - GFF6655 0.77 -0.4 29,509 - GFF6655 0.77 -0.7 29,509 - GFF6655 0.77 -0.1 29,509 - GFF6655 0.77 -0.7 29,509 - GFF6655 0.77 +0.9 29,509 - GFF6655 0.77 -0.4 29,650 + +0.3 29,650 + +0.4 29,651 - -1.0 29,651 - -0.4 29,651 - -0.8 29,744 + +0.3 29,744 + -0.0 29,745 - +0.4 29,745 - +0.1 29,768 - -0.7 29,813 + -0.5 29,813 + +1.9 29,813 + -0.2 29,814 - -0.9 29,814 - -0.1 29,814 - -0.2 29,814 - -1.0 29,814 - -0.7 29,814 - -1.2 29,861 + -0.5 29,861 + -0.0 29,861 + -0.8 29,861 + -0.5 29,861 + -1.5 29,861 + -0.4 29,861 + +0.3 29,861 + +0.1 29,861 + -0.3 29,861 + -0.4 29,861 + +1.1 29,861 + -0.6 29,861 + -0.1 29,861 + -0.4 29,861 + -0.2 29,861 + -0.4 29,862 - -1.0 29,862 - +0.5 29,862 - -0.3 29,862 - +0.1 29,862 - +0.1 29,862 - -0.1 29,862 - -0.7 29,862 - -0.5 29,862 - +0.4 29,862 - +0.6 29,862 - -0.9 29,862 - +2.1 29,862 - -0.6 29,862 - +0.3 29,862 - -0.8 29,862 - +1.2 29,862 - +0.1 29,862 - +0.0 29,862 - -0.2 29,878 + -0.9 29,878 + +0.1 29,878 + -0.5 29,878 + -0.8 29,878 + +1.1 29,878 + +1.3 29,878 + -0.7 29,879 - -0.2 29,879 - -0.3 29,879 - +0.4 29,879 - -0.2 29,881 + -0.5 29,881 + +0.1 29,881 + -1.5 29,881 + -0.7 29,881 + +0.4 29,881 + -0.8 29,881 + +0.6 29,881 + +0.1 29,881 + -1.0 29,881 + -0.2 29,881 + -0.9 29,881 + -0.2 29,881 + +0.3 29,881 + -0.6 29,881 + -0.4 29,881 + +0.2 29,881 + -0.1 29,881 + +1.4 29,881 + +0.6 29,881 + -0.4 29,882 - +1.0 29,882 - +1.6 29,882 - -1.6 29,882 - -1.2 29,882 - +0.2 29,882 - -0.4 29,882 - -0.4 29,882 - -0.3 29,882 - +0.5 29,882 - +0.1 29,882 - -0.5 29,882 - +0.2 29,882 - -0.6 29,907 + -0.7 29,908 - -0.2 29,933 + -0.3 29,933 + -0.1 29,933 + +0.6 29,934 - -0.8 29,956 + -0.2 29,999 + -0.2 30,000 - -0.0 30,000 - +0.3 30,337 + -0.6 30,337 + +0.6 30,337 + -1.2 30,337 + +0.6 30,338 - +0.4 30,338 - +0.2 30,338 - -0.2 30,338 - +1.3 30,338 - -0.7 30,338 - +1.4 30,338 - -0.3 30,633 - GFF6657 0.13 -0.7 30,633 - GFF6657 0.13 -0.3 30,633 - GFF6657 0.13 -0.6 30,633 - GFF6657 0.13 -0.6 30,633 - GFF6657 0.13 -0.6 30,654 - GFF6657 0.15 -0.4 30,654 - GFF6657 0.15 +0.1 30,707 + GFF6657 0.18 -1.7 30,707 + GFF6657 0.18 +0.9 30,707 + GFF6657 0.18 -0.4 30,708 - GFF6657 0.18 +0.1 30,708 - GFF6657 0.18 -0.2 30,708 - GFF6657 0.18 +0.5 30,708 - GFF6657 0.18 -0.6 30,708 - GFF6657 0.18 -0.4 30,708 - GFF6657 0.18 -0.4 30,791 + GFF6657 0.24 -0.1 30,792 - GFF6657 0.24 -0.9 30,812 + GFF6657 0.25 -0.2 30,812 + GFF6657 0.25 -0.5 30,812 + GFF6657 0.25 +0.4 30,812 + GFF6657 0.25 +0.2 30,812 + GFF6657 0.25 -1.1 30,813 - GFF6657 0.25 -0.1 30,813 - GFF6657 0.25 +0.2 30,813 - GFF6657 0.25 -0.1 30,813 - GFF6657 0.25 -2.3 30,977 + GFF6657 0.36 -0.9 30,978 - GFF6657 0.36 -0.6 30,978 - GFF6657 0.36 -0.5 30,978 - GFF6657 0.36 -0.0 30,978 - GFF6657 0.36 +0.5 30,978 - GFF6657 0.36 -0.1 31,274 + GFF6657 0.56 -0.6 31,274 + GFF6657 0.56 -0.5 31,275 - GFF6657 0.56 -0.4 31,295 + GFF6657 0.58 +0.2 31,295 + GFF6657 0.58 +1.1 31,295 + GFF6657 0.58 +0.3 31,295 + GFF6657 0.58 -0.9 31,295 + GFF6657 0.58 -0.7 31,295 + GFF6657 0.58 +0.2 31,295 + GFF6657 0.58 -0.1 31,295 + GFF6657 0.58 -0.2 31,295 + GFF6657 0.58 -1.1 31,295 + GFF6657 0.58 +0.1 31,295 + GFF6657 0.58 +0.2 31,295 + GFF6657 0.58 -0.7 31,296 - GFF6657 0.58 -0.2 31,296 - GFF6657 0.58 -1.7 31,296 - GFF6657 0.58 +0.6 31,296 - GFF6657 0.58 -1.4 31,296 - GFF6657 0.58 -0.1 31,296 - GFF6657 0.58 -0.7 31,296 - GFF6657 0.58 -0.1 31,296 - GFF6657 0.58 -0.2 31,296 - GFF6657 0.58 +0.4 31,296 - GFF6657 0.58 +0.6 31,296 - GFF6657 0.58 -0.7 31,296 - GFF6657 0.58 -0.6 31,307 + GFF6657 0.59 -2.1 31,307 + GFF6657 0.59 +0.1 31,307 + GFF6657 0.59 -0.6 31,307 + GFF6657 0.59 -1.0 31,308 - GFF6657 0.59 -0.3 31,308 - GFF6657 0.59 +0.6 31,308 - GFF6657 0.59 -0.1 31,308 - GFF6657 0.59 -0.7 31,367 + GFF6657 0.63 +1.0 31,368 - GFF6657 0.63 -0.4 31,368 - GFF6657 0.63 +0.4 31,628 + GFF6657 0.80 -0.8 31,628 + GFF6657 0.80 +0.3 31,628 + GFF6657 0.80 -0.9 31,628 + GFF6657 0.80 +0.7 31,628 + GFF6657 0.80 -0.2 31,628 + GFF6657 0.80 -0.3 31,629 - GFF6657 0.80 -0.4 31,629 - GFF6657 0.80 +0.3 31,629 - GFF6657 0.80 -0.9 31,629 - GFF6657 0.80 -0.9 31,629 - GFF6657 0.80 -0.2 31,629 - GFF6657 0.80 -0.1 31,629 - GFF6657 0.80 -0.4 31,669 + GFF6657 0.83 -0.4 31,669 + GFF6657 0.83 +0.1 31,670 - GFF6657 0.83 -1.2 31,670 - GFF6657 0.83 +0.6 31,670 - GFF6657 0.83 -0.8 31,670 - GFF6657 0.83 +0.1 31,820 + -0.7 31,820 + -1.3 31,820 + +0.6 31,820 + -0.4 31,820 + +0.1 31,820 + -0.3 31,820 + -0.1 31,821 - -0.8 32,007 + +0.1 32,007 + +0.3 32,007 + +0.3 32,410 - GFF6658 0.14 -0.1 32,410 - GFF6658 0.14 -0.3 32,410 - GFF6658 0.14 -1.0 32,430 + GFF6658 0.15 -0.3 32,430 + GFF6658 0.15 -0.7 32,430 + GFF6658 0.15 -0.1 32,430 + GFF6658 0.15 -0.2 32,430 + GFF6658 0.15 -0.9 32,430 + GFF6658 0.15 -0.1 32,430 + GFF6658 0.15 -1.0 32,430 + GFF6658 0.15 -1.5 32,431 - GFF6658 0.15 +0.4 32,431 - GFF6658 0.15 +0.3 32,431 - GFF6658 0.15 -1.9 32,431 - GFF6658 0.15 -0.4 32,431 - GFF6658 0.15 -0.5 32,431 - GFF6658 0.15 -0.8 32,431 - GFF6658 0.15 +1.6 32,431 - GFF6658 0.15 -0.7 32,431 - GFF6658 0.15 -0.4 32,431 - GFF6658 0.15 -0.2 32,431 - GFF6658 0.15 +0.2 32,431 - GFF6658 0.15 +1.3 32,431 - GFF6658 0.15 -0.7 32,431 - GFF6658 0.15 -1.8 32,668 - GFF6658 0.22 +0.3 32,913 + GFF6658 0.30 -0.3 32,913 + GFF6658 0.30 -2.1 32,913 + GFF6658 0.30 -0.4 32,913 + GFF6658 0.30 -0.9 32,913 + GFF6658 0.30 +0.2 32,913 + GFF6658 0.30 -1.1 32,913 + GFF6658 0.30 +1.6 32,913 + GFF6658 0.30 -3.1 32,913 + GFF6658 0.30 -0.4 32,913 + GFF6658 0.30 -0.4 32,913 + GFF6658 0.30 -0.2 32,913 + GFF6658 0.30 -0.4 32,913 + GFF6658 0.30 -0.1 32,913 + GFF6658 0.30 +0.0 32,914 - GFF6658 0.30 +0.1 32,914 - GFF6658 0.30 +0.9 32,914 - GFF6658 0.30 -1.5 32,914 - GFF6658 0.30 -0.7 32,914 - GFF6658 0.30 -2.2 32,914 - GFF6658 0.30 +1.6
Or see this region's nucleotide sequence