Strain Fitness in Variovorax sp. SCN45 around GFF650

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF649 and GFF650 overlap by 8 nucleotidesGFF650 and GFF651 overlap by 8 nucleotides GFF649 - no description, at 698,909 to 701,443 GFF649 GFF650 - Response regulator, at 701,436 to 701,894 GFF650 GFF651 - Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-), at 701,887 to 704,175 GFF651 Position (kb) 701 702Strain fitness (log2 ratio) -2 -1 0 1at 700.584 kb on + strand, within GFF649at 700.584 kb on + strand, within GFF649at 700.584 kb on + strand, within GFF649at 700.584 kb on + strand, within GFF649at 700.585 kb on - strand, within GFF649at 700.740 kb on + strand, within GFF649at 700.740 kb on + strand, within GFF649at 700.740 kb on + strand, within GFF649at 700.740 kb on + strand, within GFF649at 700.741 kb on - strand, within GFF649at 700.741 kb on - strand, within GFF649at 700.741 kb on - strand, within GFF649at 701.103 kb on + strand, within GFF649at 701.103 kb on + strand, within GFF649at 701.104 kb on - strand, within GFF649at 701.104 kb on - strand, within GFF649at 701.104 kb on - strand, within GFF649at 701.241 kb on + strandat 701.241 kb on + strandat 701.438 kb on - strandat 701.557 kb on + strand, within GFF650at 701.557 kb on + strand, within GFF650at 701.557 kb on + strand, within GFF650at 701.557 kb on + strand, within GFF650at 701.557 kb on + strand, within GFF650at 701.557 kb on + strand, within GFF650at 701.557 kb on + strand, within GFF650at 701.558 kb on - strand, within GFF650at 701.558 kb on - strand, within GFF650at 701.558 kb on - strand, within GFF650at 701.558 kb on - strand, within GFF650at 701.558 kb on - strand, within GFF650at 701.579 kb on - strand, within GFF650at 701.579 kb on - strand, within GFF650at 701.579 kb on - strand, within GFF650at 701.767 kb on + strand, within GFF650at 701.767 kb on + strand, within GFF650at 701.767 kb on + strand, within GFF650at 701.768 kb on - strand, within GFF650at 701.888 kb on + strandat 701.888 kb on + strandat 701.889 kb on - strandat 701.889 kb on - strandat 701.889 kb on - strandat 701.889 kb on - strandat 701.889 kb on - strandat 702.119 kb on + strand, within GFF651at 702.119 kb on + strand, within GFF651at 702.119 kb on + strand, within GFF651at 702.119 kb on + strand, within GFF651at 702.119 kb on + strand, within GFF651at 702.119 kb on + strand, within GFF651at 702.120 kb on - strand, within GFF651at 702.120 kb on - strand, within GFF651at 702.488 kb on + strand, within GFF651at 702.489 kb on - strand, within GFF651at 702.545 kb on + strand, within GFF651at 702.545 kb on + strand, within GFF651at 702.545 kb on + strand, within GFF651at 702.546 kb on - strand, within GFF651at 702.546 kb on - strand, within GFF651at 702.593 kb on + strand, within GFF651at 702.594 kb on - strand, within GFF651at 702.594 kb on - strand, within GFF651at 702.594 kb on - strand, within GFF651

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
700,584 + GFF649 0.66 -2.0
700,584 + GFF649 0.66 +1.0
700,584 + GFF649 0.66 -2.1
700,584 + GFF649 0.66 -0.2
700,585 - GFF649 0.66 -1.6
700,740 + GFF649 0.72 -0.5
700,740 + GFF649 0.72 +0.0
700,740 + GFF649 0.72 -0.4
700,740 + GFF649 0.72 -0.4
700,741 - GFF649 0.72 +1.0
700,741 - GFF649 0.72 -0.6
700,741 - GFF649 0.72 -0.7
701,103 + GFF649 0.87 -0.2
701,103 + GFF649 0.87 -1.2
701,104 - GFF649 0.87 -0.5
701,104 - GFF649 0.87 -2.0
701,104 - GFF649 0.87 +0.8
701,241 + -1.3
701,241 + -2.5
701,438 - -0.8
701,557 + GFF650 0.26 +0.1
701,557 + GFF650 0.26 -1.1
701,557 + GFF650 0.26 +0.3
701,557 + GFF650 0.26 -0.2
701,557 + GFF650 0.26 -0.4
701,557 + GFF650 0.26 -1.1
701,557 + GFF650 0.26 -1.4
701,558 - GFF650 0.27 -1.8
701,558 - GFF650 0.27 -1.7
701,558 - GFF650 0.27 -1.7
701,558 - GFF650 0.27 +0.3
701,558 - GFF650 0.27 -0.9
701,579 - GFF650 0.31 +0.0
701,579 - GFF650 0.31 -1.1
701,579 - GFF650 0.31 -0.3
701,767 + GFF650 0.72 -0.6
701,767 + GFF650 0.72 -1.3
701,767 + GFF650 0.72 -0.4
701,768 - GFF650 0.72 +0.6
701,888 + -1.0
701,888 + -1.0
701,889 - +0.3
701,889 - -0.8
701,889 - +0.6
701,889 - -1.0
701,889 - -1.4
702,119 + GFF651 0.10 -2.3
702,119 + GFF651 0.10 -0.5
702,119 + GFF651 0.10 -1.1
702,119 + GFF651 0.10 -0.6
702,119 + GFF651 0.10 -2.6
702,119 + GFF651 0.10 -1.0
702,120 - GFF651 0.10 -2.0
702,120 - GFF651 0.10 +0.6
702,488 + GFF651 0.26 -0.7
702,489 - GFF651 0.26 -1.0
702,545 + GFF651 0.29 -0.5
702,545 + GFF651 0.29 -1.0
702,545 + GFF651 0.29 -1.6
702,546 - GFF651 0.29 -2.0
702,546 - GFF651 0.29 -0.7
702,593 + GFF651 0.31 -2.0
702,594 - GFF651 0.31 -1.7
702,594 - GFF651 0.31 -2.0
702,594 - GFF651 0.31 -2.0

Or see this region's nucleotide sequence