Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6481 and GFF6482 are separated by 49 nucleotides GFF6482 and GFF6483 overlap by 26 nucleotides GFF6483 and GFF6484 are separated by 26 nucleotides
GFF6481 - Bll1370 protein, at 60,118 to 61,230
GFF6481
GFF6482 - Transcriptional regulator, AcrR family, at 61,280 to 61,903
GFF6482
GFF6483 - Serine esterase, at 61,878 to 62,555
GFF6483
GFF6484 - putative oxidoreductase, nitronate monooxygenase family, at 62,582 to 63,634
GFF6484
Position (kb) 61
62
63 Strain fitness (log2 ratio) -1
0
1 at 60.930 kb on - strand, within GFF6481 at 60.936 kb on - strand, within GFF6481 at 60.936 kb on - strand, within GFF6481 at 60.936 kb on - strand, within GFF6481 at 60.936 kb on - strand, within GFF6481 at 61.046 kb on + strand, within GFF6481 at 61.047 kb on - strand, within GFF6481 at 61.047 kb on - strand, within GFF6481 at 61.076 kb on + strand, within GFF6481 at 61.076 kb on + strand, within GFF6481 at 61.077 kb on - strand, within GFF6481 at 61.077 kb on - strand, within GFF6481 at 61.210 kb on + strand at 61.211 kb on - strand at 61.241 kb on + strand at 61.241 kb on + strand at 61.242 kb on - strand at 61.242 kb on - strand at 61.242 kb on - strand at 61.242 kb on - strand at 61.242 kb on - strand at 61.242 kb on - strand at 61.242 kb on - strand at 61.355 kb on + strand, within GFF6482 at 61.356 kb on - strand, within GFF6482 at 61.356 kb on - strand, within GFF6482 at 61.451 kb on + strand, within GFF6482 at 61.451 kb on + strand, within GFF6482 at 61.451 kb on + strand, within GFF6482 at 61.451 kb on + strand, within GFF6482 at 61.451 kb on + strand, within GFF6482 at 61.452 kb on - strand, within GFF6482 at 61.452 kb on - strand, within GFF6482 at 61.457 kb on + strand, within GFF6482 at 61.458 kb on - strand, within GFF6482 at 61.458 kb on - strand, within GFF6482 at 61.490 kb on + strand, within GFF6482 at 61.692 kb on - strand, within GFF6482 at 62.362 kb on + strand, within GFF6483 at 62.362 kb on + strand, within GFF6483 at 62.362 kb on + strand, within GFF6483 at 62.362 kb on + strand, within GFF6483 at 62.362 kb on + strand, within GFF6483 at 62.362 kb on + strand, within GFF6483 at 62.362 kb on + strand, within GFF6483 at 62.363 kb on - strand, within GFF6483 at 62.363 kb on - strand, within GFF6483 at 62.363 kb on - strand, within GFF6483 at 62.363 kb on - strand, within GFF6483 at 62.363 kb on - strand, within GFF6483 at 62.363 kb on - strand, within GFF6483 at 62.363 kb on - strand, within GFF6483 at 62.363 kb on - strand, within GFF6483 at 62.383 kb on + strand, within GFF6483 at 62.383 kb on + strand, within GFF6483 at 62.383 kb on + strand, within GFF6483 at 62.383 kb on + strand, within GFF6483 at 62.384 kb on - strand, within GFF6483 at 62.384 kb on - strand, within GFF6483 at 62.916 kb on + strand, within GFF6484 at 62.916 kb on + strand, within GFF6484 at 62.916 kb on + strand, within GFF6484 at 62.916 kb on + strand, within GFF6484 at 62.917 kb on - strand, within GFF6484 at 63.357 kb on + strand, within GFF6484 at 63.357 kb on + strand, within GFF6484 at 63.358 kb on - strand, within GFF6484 at 63.358 kb on - strand, within GFF6484 at 63.358 kb on - strand, within GFF6484 at 63.358 kb on - strand, within GFF6484 at 63.361 kb on - strand, within GFF6484 at 63.361 kb on - strand, within GFF6484 at 63.361 kb on - strand, within GFF6484 at 63.361 kb on - strand, within GFF6484
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 60,930 - GFF6481 0.73 -1.7 60,936 - GFF6481 0.73 +1.1 60,936 - GFF6481 0.73 -0.9 60,936 - GFF6481 0.73 -1.2 60,936 - GFF6481 0.73 +1.2 61,046 + GFF6481 0.83 -0.2 61,047 - GFF6481 0.83 +1.4 61,047 - GFF6481 0.83 +1.2 61,076 + GFF6481 0.86 +1.0 61,076 + GFF6481 0.86 -0.1 61,077 - GFF6481 0.86 -0.5 61,077 - GFF6481 0.86 +0.3 61,210 + +0.3 61,211 - +0.8 61,241 + -0.4 61,241 + +0.3 61,242 - -0.1 61,242 - +0.3 61,242 - -0.3 61,242 - +0.1 61,242 - -0.1 61,242 - -0.4 61,242 - -1.0 61,355 + GFF6482 0.12 -0.2 61,356 - GFF6482 0.12 -0.6 61,356 - GFF6482 0.12 -0.5 61,451 + GFF6482 0.27 +0.3 61,451 + GFF6482 0.27 +0.3 61,451 + GFF6482 0.27 +0.2 61,451 + GFF6482 0.27 -1.5 61,451 + GFF6482 0.27 +0.8 61,452 - GFF6482 0.28 +0.0 61,452 - GFF6482 0.28 -0.2 61,457 + GFF6482 0.28 -1.1 61,458 - GFF6482 0.29 +1.5 61,458 - GFF6482 0.29 -1.0 61,490 + GFF6482 0.34 +0.3 61,692 - GFF6482 0.66 +0.2 62,362 + GFF6483 0.71 -0.9 62,362 + GFF6483 0.71 -1.2 62,362 + GFF6483 0.71 -0.2 62,362 + GFF6483 0.71 -0.7 62,362 + GFF6483 0.71 -0.5 62,362 + GFF6483 0.71 -0.3 62,362 + GFF6483 0.71 -0.6 62,363 - GFF6483 0.72 +0.3 62,363 - GFF6483 0.72 -0.7 62,363 - GFF6483 0.72 -0.2 62,363 - GFF6483 0.72 -1.4 62,363 - GFF6483 0.72 -0.3 62,363 - GFF6483 0.72 -1.6 62,363 - GFF6483 0.72 -1.0 62,363 - GFF6483 0.72 +0.2 62,383 + GFF6483 0.74 -0.2 62,383 + GFF6483 0.74 -0.6 62,383 + GFF6483 0.74 +0.2 62,383 + GFF6483 0.74 +0.4 62,384 - GFF6483 0.75 -1.1 62,384 - GFF6483 0.75 +0.3 62,916 + GFF6484 0.32 +0.9 62,916 + GFF6484 0.32 +0.3 62,916 + GFF6484 0.32 -1.7 62,916 + GFF6484 0.32 -1.1 62,917 - GFF6484 0.32 -0.8 63,357 + GFF6484 0.74 -0.3 63,357 + GFF6484 0.74 +0.2 63,358 - GFF6484 0.74 +0.4 63,358 - GFF6484 0.74 -1.1 63,358 - GFF6484 0.74 -0.1 63,358 - GFF6484 0.74 +0.3 63,361 - GFF6484 0.74 -1.2 63,361 - GFF6484 0.74 -0.8 63,361 - GFF6484 0.74 +0.1 63,361 - GFF6484 0.74 +0.3
Or see this region's nucleotide sequence