Strain Fitness in Variovorax sp. SCN45 around GFF6461

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6460 and GFF6461 are separated by 14 nucleotidesGFF6461 and GFF6462 overlap by 4 nucleotidesGFF6462 and GFF6463 are separated by 11 nucleotides GFF6460 - Sensor protein BasS/PmrB (activates BasR/PmrA), at 37,377 to 38,732 GFF6460 GFF6461 - Thioesterase superfamily, at 38,747 to 39,169 GFF6461 GFF6462 - Integral membrane protein, at 39,166 to 40,065 GFF6462 GFF6463 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 40,077 to 40,859 GFF6463 Position (kb) 38 39 40Strain fitness (log2 ratio) -2 -1 0 1 2at 37.779 kb on + strand, within GFF6460at 37.779 kb on + strand, within GFF6460at 37.779 kb on + strand, within GFF6460at 37.779 kb on + strand, within GFF6460at 37.779 kb on + strand, within GFF6460at 37.780 kb on - strand, within GFF6460at 37.780 kb on - strand, within GFF6460at 37.780 kb on - strand, within GFF6460at 37.780 kb on - strand, within GFF6460at 37.809 kb on + strand, within GFF6460at 37.809 kb on + strand, within GFF6460at 37.809 kb on + strand, within GFF6460at 37.809 kb on + strand, within GFF6460at 37.809 kb on + strand, within GFF6460at 37.810 kb on - strand, within GFF6460at 37.810 kb on - strand, within GFF6460at 37.810 kb on - strand, within GFF6460at 37.810 kb on - strand, within GFF6460at 37.810 kb on - strand, within GFF6460at 38.916 kb on + strand, within GFF6461at 38.916 kb on + strand, within GFF6461at 38.916 kb on + strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.917 kb on - strand, within GFF6461at 38.943 kb on + strand, within GFF6461at 39.066 kb on + strand, within GFF6461at 39.066 kb on + strand, within GFF6461at 39.066 kb on + strand, within GFF6461at 39.067 kb on - strand, within GFF6461at 39.067 kb on - strand, within GFF6461at 39.067 kb on - strand, within GFF6461at 39.132 kb on + strandat 39.133 kb on - strandat 39.133 kb on - strandat 39.266 kb on + strand, within GFF6462at 39.266 kb on + strand, within GFF6462at 39.266 kb on + strand, within GFF6462at 39.266 kb on + strand, within GFF6462at 39.266 kb on + strand, within GFF6462at 39.267 kb on - strand, within GFF6462at 39.267 kb on - strand, within GFF6462at 39.563 kb on + strand, within GFF6462at 39.564 kb on - strand, within GFF6462at 39.564 kb on - strand, within GFF6462at 39.564 kb on - strand, within GFF6462at 39.564 kb on - strand, within GFF6462at 39.833 kb on + strand, within GFF6462at 39.833 kb on + strand, within GFF6462at 39.833 kb on + strand, within GFF6462at 39.834 kb on - strand, within GFF6462at 39.834 kb on - strand, within GFF6462at 39.834 kb on - strand, within GFF6462at 39.836 kb on + strand, within GFF6462at 39.837 kb on - strand, within GFF6462

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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37,779 + GFF6460 0.30 +0.3
37,779 + GFF6460 0.30 +0.2
37,779 + GFF6460 0.30 +0.0
37,779 + GFF6460 0.30 -0.0
37,779 + GFF6460 0.30 -0.4
37,780 - GFF6460 0.30 -1.1
37,780 - GFF6460 0.30 -0.7
37,780 - GFF6460 0.30 -0.3
37,780 - GFF6460 0.30 -0.2
37,809 + GFF6460 0.32 -0.7
37,809 + GFF6460 0.32 +0.3
37,809 + GFF6460 0.32 -0.8
37,809 + GFF6460 0.32 +0.9
37,809 + GFF6460 0.32 -1.8
37,810 - GFF6460 0.32 -1.1
37,810 - GFF6460 0.32 -0.8
37,810 - GFF6460 0.32 -0.8
37,810 - GFF6460 0.32 -1.1
37,810 - GFF6460 0.32 -0.0
38,916 + GFF6461 0.40 -0.9
38,916 + GFF6461 0.40 -0.7
38,916 + GFF6461 0.40 +1.2
38,917 - GFF6461 0.40 -1.2
38,917 - GFF6461 0.40 +0.1
38,917 - GFF6461 0.40 +0.6
38,917 - GFF6461 0.40 +0.3
38,917 - GFF6461 0.40 -2.2
38,917 - GFF6461 0.40 +0.7
38,917 - GFF6461 0.40 +0.1
38,917 - GFF6461 0.40 +0.4
38,917 - GFF6461 0.40 -0.6
38,917 - GFF6461 0.40 +0.9
38,917 - GFF6461 0.40 +0.2
38,917 - GFF6461 0.40 +0.3
38,917 - GFF6461 0.40 -0.6
38,917 - GFF6461 0.40 +0.6
38,917 - GFF6461 0.40 -0.6
38,917 - GFF6461 0.40 +0.3
38,943 + GFF6461 0.46 +1.4
39,066 + GFF6461 0.75 -0.6
39,066 + GFF6461 0.75 +1.0
39,066 + GFF6461 0.75 -0.4
39,067 - GFF6461 0.76 -0.4
39,067 - GFF6461 0.76 +0.4
39,067 - GFF6461 0.76 +0.9
39,132 + +1.2
39,133 - +0.5
39,133 - +1.8
39,266 + GFF6462 0.11 -1.7
39,266 + GFF6462 0.11 +0.1
39,266 + GFF6462 0.11 +0.8
39,266 + GFF6462 0.11 -0.3
39,266 + GFF6462 0.11 -0.4
39,267 - GFF6462 0.11 +0.6
39,267 - GFF6462 0.11 +0.3
39,563 + GFF6462 0.44 +0.1
39,564 - GFF6462 0.44 -0.4
39,564 - GFF6462 0.44 -0.6
39,564 - GFF6462 0.44 +0.1
39,564 - GFF6462 0.44 -0.6
39,833 + GFF6462 0.74 -0.2
39,833 + GFF6462 0.74 +1.8
39,833 + GFF6462 0.74 -1.0
39,834 - GFF6462 0.74 -0.4
39,834 - GFF6462 0.74 -0.7
39,834 - GFF6462 0.74 +0.5
39,836 + GFF6462 0.74 -0.2
39,837 - GFF6462 0.75 -1.3

Or see this region's nucleotide sequence