Strain Fitness in Variovorax sp. SCN45 around GFF6395

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
69,268	+		GFF6394	0.14	+0.8
69,268	+		GFF6394	0.14	-0.4
69,268	+		GFF6394	0.14	+0.3
69,268	+		GFF6394	0.14	+0.1
69,268	+		GFF6394	0.14	+1.6
69,268	+		GFF6394	0.14	-0.9
69,268	+		GFF6394	0.14	+1.6
69,269	-		GFF6394	0.14	-0.8
69,269	-		GFF6394	0.14	-0.3
69,269	-		GFF6394	0.14	-0.1
69,325	+		GFF6394	0.20	-0.3
69,325	+		GFF6394	0.20	-1.9
69,325	+		GFF6394	0.20	+0.2
69,325	+		GFF6394	0.20	-1.0
69,325	+		GFF6394	0.20	+0.8
69,325	+		GFF6394	0.20	-0.6
69,326	-		GFF6394	0.20	+1.1
69,331	+		GFF6394	0.20	+0.4
69,331	+		GFF6394	0.20	+0.8
69,331	+		GFF6394	0.20	-0.5
69,331	+		GFF6394	0.20	+1.1
69,331	+		GFF6394	0.20	-0.3
69,331	+		GFF6394	0.20	+0.4
69,373	+		GFF6394	0.24	+0.3
69,373	+		GFF6394	0.24	-0.6
69,373	+		GFF6394	0.24	-0.3
69,373	+		GFF6394	0.24	-0.0
69,373	+		GFF6394	0.24	-0.3
69,374	-		GFF6394	0.24	-0.6
69,374	-		GFF6394	0.24	+0.5
69,374	-		GFF6394	0.24	-0.7
69,374	-		GFF6394	0.24	-0.1
69,374	-		GFF6394	0.24	-0.1
69,374	-		GFF6394	0.24	+0.9
69,374	-		GFF6394	0.24	-0.4
69,374	-		GFF6394	0.24	+1.0
69,520	+		GFF6394	0.39	+0.0
69,520	+		GFF6394	0.39	+0.6
69,520	+		GFF6394	0.39	-0.2
69,520	+		GFF6394	0.39	+0.7
69,520	+		GFF6394	0.39	-0.3
69,520	+		GFF6394	0.39	-0.3
69,520	+		GFF6394	0.39	+0.7
69,521	-		GFF6394	0.39	-1.2
69,521	-		GFF6394	0.39	-1.0
69,521	-		GFF6394	0.39	+0.7
69,521	-		GFF6394	0.39	+0.5
69,853	+		GFF6394	0.72	-0.1
69,853	+		GFF6394	0.72	-0.4
69,853	+		GFF6394	0.72	-1.4
69,853	+		GFF6394	0.72	-0.1
69,853	+		GFF6394	0.72	-0.2
69,854	-		GFF6394	0.72	+0.1
69,854	-		GFF6394	0.72	-0.1
69,856	+		GFF6394	0.72	+0.7
69,856	+		GFF6394	0.72	-1.4
69,856	+		GFF6394	0.72	-0.5
69,856	+		GFF6394	0.72	+0.2
69,857	-		GFF6394	0.72	-0.1
69,857	-		GFF6394	0.72	-0.8
69,857	-		GFF6394	0.72	-0.7
69,857	-		GFF6394	0.72	-0.8
70,007	-		GFF6394	0.87	+0.2
70,054	+				-0.3
70,054	+				+1.0
70,054	+				-0.1
70,054	+				-1.0
70,054	+				-1.6
70,054	+				-1.1
70,054	+				-0.9
70,054	+				+0.4
70,055	-				+1.3
70,055	-				-0.8
70,055	-				+1.5
70,055	-				+1.0
70,055	-				-0.2
70,055	-				-0.1
70,055	-				+0.3
70,055	-				+0.2
70,055	-				-0.5
70,055	-				-0.2
70,055	-				-0.1
70,055	-				-1.3
70,072	+				-0.2
70,072	+				-0.4
70,072	+				-0.0
70,073	-				+0.2
70,075	+				-0.4
70,075	+				-0.4
70,075	+				+0.3
70,075	+				-1.1
70,075	+				+0.3
70,075	+				-0.2
70,075	+				-0.6
70,075	+				+1.9
70,075	+				-1.5
70,076	-				-0.5
70,076	-				-0.8
70,076	-				+0.9
70,076	-				-0.7
70,076	-				+0.2
70,076	-				+1.9
70,088	+				+1.1
70,088	+				-0.4
70,088	+				-0.6
70,445	+		GFF6395	0.32	-0.2
70,445	+		GFF6395	0.32	+0.1
70,445	+		GFF6395	0.32	-0.5
70,445	+		GFF6395	0.32	+0.8
70,445	+		GFF6395	0.32	-0.3
70,446	-		GFF6395	0.32	+1.0
70,446	-		GFF6395	0.32	-0.1
70,446	-		GFF6395	0.32	-0.8
70,446	-		GFF6395	0.32	-0.6
70,446	-		GFF6395	0.32	-0.1
70,446	-		GFF6395	0.32	+0.2
70,446	-		GFF6395	0.32	+1.0
70,446	-		GFF6395	0.32	+0.2
70,446	-		GFF6395	0.32	+0.6
70,446	-		GFF6395	0.32	-0.0
70,446	-		GFF6395	0.32	-0.1
70,493	+		GFF6395	0.37	+0.4
70,493	+		GFF6395	0.37	-0.6
70,493	+		GFF6395	0.37	-0.3
70,493	+		GFF6395	0.37	-0.1
70,493	+		GFF6395	0.37	+0.4
70,493	+		GFF6395	0.37	+0.4
70,493	+		GFF6395	0.37	-0.2
70,494	-		GFF6395	0.37	-0.3
70,494	-		GFF6395	0.37	-0.3
70,598	+		GFF6395	0.48	-0.4
70,598	+		GFF6395	0.48	-1.3
70,598	+		GFF6395	0.48	+0.8
70,598	+		GFF6395	0.48	+0.9
70,871	+		GFF6395	0.77	-1.0
70,871	+		GFF6395	0.77	-0.4
70,871	+		GFF6395	0.77	-0.2
70,872	-		GFF6395	0.77	-0.7
70,872	-		GFF6395	0.77	-0.6
70,872	-		GFF6395	0.77	-0.3
70,878	-		GFF6395	0.78	+0.7
70,878	-		GFF6395	0.78	-0.2
70,946	+		GFF6395	0.85	+0.4
71,081	+				+0.1
71,081	+				-1.1
71,082	-				-1.4
71,082	-				+0.1
71,082	-				-0.4
71,082	-				-1.9
71,175	+		GFF6396	0.18	-0.3
71,175	+		GFF6396	0.18	-1.8
71,175	+		GFF6396	0.18	+0.1
71,175	+		GFF6396	0.18	+0.9
71,175	+		GFF6396	0.18	+0.1
71,175	+		GFF6396	0.18	-0.1
71,175	+		GFF6396	0.18	-0.8
71,175	+		GFF6396	0.18	+1.9
71,175	+		GFF6396	0.18	+0.3
71,175	+		GFF6396	0.18	-0.6
71,175	+		GFF6396	0.18	+0.4
71,176	-		GFF6396	0.18	+0.7
71,176	-		GFF6396	0.18	-1.0
71,176	-		GFF6396	0.18	-0.0
71,176	-		GFF6396	0.18	-0.3
71,493	+				-0.1
71,493	+				+0.2
71,494	-				+0.2
71,494	-				+0.3
71,494	-				-0.2
71,494	-				-0.3
71,505	+				-0.0
71,505	+				-1.1
71,505	+				-1.0
71,505	+				+0.7
71,505	+				+0.6
71,505	+				-0.9
71,505	+				+0.0
71,505	+				+0.3
71,505	+				-1.4
71,505	+				-0.4
71,505	+				-0.1
71,505	+				-1.2
71,505	+				+0.1
71,505	+				-0.4
71,505	+				-1.7
71,505	+				-0.4
71,505	+				-0.4
71,505	+				+0.6
71,505	+				+0.6
71,505	+				-0.6
71,505	+				-1.8
71,505	-				-0.5
71,506	-				+0.7
71,506	-				-0.8
71,506	-				-0.0
71,506	-				-1.6
71,506	-				+0.5
71,506	-				+1.3
71,506	-				-0.2
71,506	-				+0.3
71,506	-				-0.9
71,506	-				-0.1
71,506	-				+1.2
71,506	-				-0.5
71,506	-				-0.7
71,506	-				-0.3
71,506	-				-1.6
71,506	-				+0.6
71,506	-				+0.5
71,506	-				+1.6
71,506	-				+0.5
71,584	+				-0.4
71,584	+				+0.2
71,585	-				+0.2
71,585	-				+0.4
71,585	-				+0.3
71,585	-				-0.6
71,585	-				-0.5
71,585	-				+0.4
71,585	-				+0.7
71,634	-				+1.9
71,644	-				-0.3
72,013	+		GFF6397	0.38	-1.7
72,013	+		GFF6397	0.38	-0.8
72,014	-		GFF6397	0.38	+0.6