Strain Fitness in Variovorax sp. SCN45 around GFF6394

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6393 and GFF6394 are separated by 229 nucleotidesGFF6394 and GFF6395 are separated by 10 nucleotidesGFF6395 and GFF6396 are separated by 12 nucleotides GFF6393 - 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), C-terminal domain, at 66,126 to 68,897 GFF6393 GFF6394 - Lipase precursor (EC 3.1.1.3), at 69,127 to 70,140 GFF6394 GFF6395 - hypothetical protein, at 70,151 to 71,083 GFF6395 GFF6396 - hypothetical protein, at 71,096 to 71,533 GFF6396 Position (kb) 69 70 71Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 68.245 kb on + strand, within GFF6393at 68.245 kb on + strand, within GFF6393at 68.245 kb on + strand, within GFF6393at 68.245 kb on + strand, within GFF6393at 68.246 kb on - strand, within GFF6393at 68.246 kb on - strand, within GFF6393at 68.246 kb on - strand, within GFF6393at 68.246 kb on - strand, within GFF6393at 68.246 kb on - strand, within GFF6393at 68.246 kb on - strand, within GFF6393at 68.377 kb on + strand, within GFF6393at 68.377 kb on + strand, within GFF6393at 68.377 kb on + strand, within GFF6393at 68.377 kb on + strand, within GFF6393at 68.377 kb on + strand, within GFF6393at 68.377 kb on + strand, within GFF6393at 68.377 kb on + strand, within GFF6393at 68.377 kb on + strand, within GFF6393at 68.377 kb on + strand, within GFF6393at 68.377 kb on + strand, within GFF6393at 68.378 kb on - strand, within GFF6393at 68.378 kb on - strand, within GFF6393at 68.378 kb on - strand, within GFF6393at 68.378 kb on - strand, within GFF6393at 68.378 kb on - strand, within GFF6393at 68.378 kb on - strand, within GFF6393at 68.378 kb on - strand, within GFF6393at 68.431 kb on + strand, within GFF6393at 68.432 kb on - strand, within GFF6393at 68.873 kb on + strandat 68.874 kb on - strandat 68.874 kb on - strandat 68.874 kb on - strandat 68.885 kb on - strandat 69.268 kb on + strand, within GFF6394at 69.268 kb on + strand, within GFF6394at 69.268 kb on + strand, within GFF6394at 69.268 kb on + strand, within GFF6394at 69.268 kb on + strand, within GFF6394at 69.268 kb on + strand, within GFF6394at 69.268 kb on + strand, within GFF6394at 69.269 kb on - strand, within GFF6394at 69.269 kb on - strand, within GFF6394at 69.269 kb on - strand, within GFF6394at 69.325 kb on + strand, within GFF6394at 69.325 kb on + strand, within GFF6394at 69.325 kb on + strand, within GFF6394at 69.325 kb on + strand, within GFF6394at 69.325 kb on + strand, within GFF6394at 69.325 kb on + strand, within GFF6394at 69.326 kb on - strand, within GFF6394at 69.331 kb on + strand, within GFF6394at 69.331 kb on + strand, within GFF6394at 69.331 kb on + strand, within GFF6394at 69.331 kb on + strand, within GFF6394at 69.331 kb on + strand, within GFF6394at 69.331 kb on + strand, within GFF6394at 69.373 kb on + strand, within GFF6394at 69.373 kb on + strand, within GFF6394at 69.373 kb on + strand, within GFF6394at 69.373 kb on + strand, within GFF6394at 69.373 kb on + strand, within GFF6394at 69.374 kb on - strand, within GFF6394at 69.374 kb on - strand, within GFF6394at 69.374 kb on - strand, within GFF6394at 69.374 kb on - strand, within GFF6394at 69.374 kb on - strand, within GFF6394at 69.374 kb on - strand, within GFF6394at 69.374 kb on - strand, within GFF6394at 69.374 kb on - strand, within GFF6394at 69.520 kb on + strand, within GFF6394at 69.520 kb on + strand, within GFF6394at 69.520 kb on + strand, within GFF6394at 69.520 kb on + strand, within GFF6394at 69.520 kb on + strand, within GFF6394at 69.520 kb on + strand, within GFF6394at 69.520 kb on + strand, within GFF6394at 69.521 kb on - strand, within GFF6394at 69.521 kb on - strand, within GFF6394at 69.521 kb on - strand, within GFF6394at 69.521 kb on - strand, within GFF6394at 69.853 kb on + strand, within GFF6394at 69.853 kb on + strand, within GFF6394at 69.853 kb on + strand, within GFF6394at 69.853 kb on + strand, within GFF6394at 69.853 kb on + strand, within GFF6394at 69.854 kb on - strand, within GFF6394at 69.854 kb on - strand, within GFF6394at 69.856 kb on + strand, within GFF6394at 69.856 kb on + strand, within GFF6394at 69.856 kb on + strand, within GFF6394at 69.856 kb on + strand, within GFF6394at 69.857 kb on - strand, within GFF6394at 69.857 kb on - strand, within GFF6394at 69.857 kb on - strand, within GFF6394at 69.857 kb on - strand, within GFF6394at 70.007 kb on - strand, within GFF6394at 70.054 kb on + strandat 70.054 kb on + strandat 70.054 kb on + strandat 70.054 kb on + strandat 70.054 kb on + strandat 70.054 kb on + strandat 70.054 kb on + strandat 70.054 kb on + strandat 70.055 kb on - strandat 70.055 kb on - strandat 70.055 kb on - strandat 70.055 kb on - strandat 70.055 kb on - strandat 70.055 kb on - strandat 70.055 kb on - strandat 70.055 kb on - strandat 70.055 kb on - strandat 70.055 kb on - strandat 70.055 kb on - strandat 70.055 kb on - strandat 70.072 kb on + strandat 70.072 kb on + strandat 70.072 kb on + strandat 70.073 kb on - strandat 70.075 kb on + strandat 70.075 kb on + strandat 70.075 kb on + strandat 70.075 kb on + strandat 70.075 kb on + strandat 70.075 kb on + strandat 70.075 kb on + strandat 70.075 kb on + strandat 70.075 kb on + strandat 70.076 kb on - strandat 70.076 kb on - strandat 70.076 kb on - strandat 70.076 kb on - strandat 70.076 kb on - strandat 70.076 kb on - strandat 70.088 kb on + strandat 70.088 kb on + strandat 70.088 kb on + strandat 70.445 kb on + strand, within GFF6395at 70.445 kb on + strand, within GFF6395at 70.445 kb on + strand, within GFF6395at 70.445 kb on + strand, within GFF6395at 70.445 kb on + strand, within GFF6395at 70.446 kb on - strand, within GFF6395at 70.446 kb on - strand, within GFF6395at 70.446 kb on - strand, within GFF6395at 70.446 kb on - strand, within GFF6395at 70.446 kb on - strand, within GFF6395at 70.446 kb on - strand, within GFF6395at 70.446 kb on - strand, within GFF6395at 70.446 kb on - strand, within GFF6395at 70.446 kb on - strand, within GFF6395at 70.446 kb on - strand, within GFF6395at 70.446 kb on - strand, within GFF6395at 70.493 kb on + strand, within GFF6395at 70.493 kb on + strand, within GFF6395at 70.493 kb on + strand, within GFF6395at 70.493 kb on + strand, within GFF6395at 70.493 kb on + strand, within GFF6395at 70.493 kb on + strand, within GFF6395at 70.493 kb on + strand, within GFF6395at 70.494 kb on - strand, within GFF6395at 70.494 kb on - strand, within GFF6395at 70.598 kb on + strand, within GFF6395at 70.598 kb on + strand, within GFF6395at 70.598 kb on + strand, within GFF6395at 70.598 kb on + strand, within GFF6395at 70.871 kb on + strand, within GFF6395at 70.871 kb on + strand, within GFF6395at 70.871 kb on + strand, within GFF6395at 70.872 kb on - strand, within GFF6395at 70.872 kb on - strand, within GFF6395at 70.872 kb on - strand, within GFF6395at 70.878 kb on - strand, within GFF6395at 70.878 kb on - strand, within GFF6395at 70.946 kb on + strand, within GFF6395at 71.081 kb on + strandat 71.081 kb on + strandat 71.082 kb on - strandat 71.082 kb on - strandat 71.082 kb on - strandat 71.082 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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68,245 + GFF6393 0.76 +0.9
68,245 + GFF6393 0.76 +0.9
68,245 + GFF6393 0.76 -0.3
68,245 + GFF6393 0.76 +0.4
68,246 - GFF6393 0.76 +0.0
68,246 - GFF6393 0.76 +0.5
68,246 - GFF6393 0.76 -1.5
68,246 - GFF6393 0.76 -0.6
68,246 - GFF6393 0.76 +0.0
68,246 - GFF6393 0.76 +0.1
68,377 + GFF6393 0.81 +0.1
68,377 + GFF6393 0.81 -2.8
68,377 + GFF6393 0.81 -0.9
68,377 + GFF6393 0.81 -0.8
68,377 + GFF6393 0.81 -0.3
68,377 + GFF6393 0.81 +1.1
68,377 + GFF6393 0.81 +0.2
68,377 + GFF6393 0.81 -0.1
68,377 + GFF6393 0.81 +0.3
68,377 + GFF6393 0.81 +2.3
68,378 - GFF6393 0.81 -0.2
68,378 - GFF6393 0.81 -0.5
68,378 - GFF6393 0.81 +0.1
68,378 - GFF6393 0.81 -0.3
68,378 - GFF6393 0.81 -1.0
68,378 - GFF6393 0.81 -0.7
68,378 - GFF6393 0.81 +1.0
68,431 + GFF6393 0.83 -0.7
68,432 - GFF6393 0.83 +0.1
68,873 + +1.0
68,874 - +0.1
68,874 - -0.6
68,874 - -1.0
68,885 - +0.9
69,268 + GFF6394 0.14 +0.8
69,268 + GFF6394 0.14 -0.4
69,268 + GFF6394 0.14 +0.3
69,268 + GFF6394 0.14 +0.1
69,268 + GFF6394 0.14 +1.6
69,268 + GFF6394 0.14 -0.9
69,268 + GFF6394 0.14 +1.6
69,269 - GFF6394 0.14 -0.8
69,269 - GFF6394 0.14 -0.3
69,269 - GFF6394 0.14 -0.1
69,325 + GFF6394 0.20 -0.3
69,325 + GFF6394 0.20 -1.9
69,325 + GFF6394 0.20 +0.2
69,325 + GFF6394 0.20 -1.0
69,325 + GFF6394 0.20 +0.8
69,325 + GFF6394 0.20 -0.6
69,326 - GFF6394 0.20 +1.1
69,331 + GFF6394 0.20 +0.4
69,331 + GFF6394 0.20 +0.8
69,331 + GFF6394 0.20 -0.5
69,331 + GFF6394 0.20 +1.1
69,331 + GFF6394 0.20 -0.3
69,331 + GFF6394 0.20 +0.4
69,373 + GFF6394 0.24 +0.3
69,373 + GFF6394 0.24 -0.6
69,373 + GFF6394 0.24 -0.3
69,373 + GFF6394 0.24 -0.0
69,373 + GFF6394 0.24 -0.3
69,374 - GFF6394 0.24 -0.6
69,374 - GFF6394 0.24 +0.5
69,374 - GFF6394 0.24 -0.7
69,374 - GFF6394 0.24 -0.1
69,374 - GFF6394 0.24 -0.1
69,374 - GFF6394 0.24 +0.9
69,374 - GFF6394 0.24 -0.4
69,374 - GFF6394 0.24 +1.0
69,520 + GFF6394 0.39 +0.0
69,520 + GFF6394 0.39 +0.6
69,520 + GFF6394 0.39 -0.2
69,520 + GFF6394 0.39 +0.7
69,520 + GFF6394 0.39 -0.3
69,520 + GFF6394 0.39 -0.3
69,520 + GFF6394 0.39 +0.7
69,521 - GFF6394 0.39 -1.2
69,521 - GFF6394 0.39 -1.0
69,521 - GFF6394 0.39 +0.7
69,521 - GFF6394 0.39 +0.5
69,853 + GFF6394 0.72 -0.1
69,853 + GFF6394 0.72 -0.4
69,853 + GFF6394 0.72 -1.4
69,853 + GFF6394 0.72 -0.1
69,853 + GFF6394 0.72 -0.2
69,854 - GFF6394 0.72 +0.1
69,854 - GFF6394 0.72 -0.1
69,856 + GFF6394 0.72 +0.7
69,856 + GFF6394 0.72 -1.4
69,856 + GFF6394 0.72 -0.5
69,856 + GFF6394 0.72 +0.2
69,857 - GFF6394 0.72 -0.1
69,857 - GFF6394 0.72 -0.8
69,857 - GFF6394 0.72 -0.7
69,857 - GFF6394 0.72 -0.8
70,007 - GFF6394 0.87 +0.2
70,054 + -0.3
70,054 + +1.0
70,054 + -0.1
70,054 + -1.0
70,054 + -1.6
70,054 + -1.1
70,054 + -0.9
70,054 + +0.4
70,055 - +1.3
70,055 - -0.8
70,055 - +1.5
70,055 - +1.0
70,055 - -0.2
70,055 - -0.1
70,055 - +0.3
70,055 - +0.2
70,055 - -0.5
70,055 - -0.2
70,055 - -0.1
70,055 - -1.3
70,072 + -0.2
70,072 + -0.4
70,072 + -0.0
70,073 - +0.2
70,075 + -0.4
70,075 + -0.4
70,075 + +0.3
70,075 + -1.1
70,075 + +0.3
70,075 + -0.2
70,075 + -0.6
70,075 + +1.9
70,075 + -1.5
70,076 - -0.5
70,076 - -0.8
70,076 - +0.9
70,076 - -0.7
70,076 - +0.2
70,076 - +1.9
70,088 + +1.1
70,088 + -0.4
70,088 + -0.6
70,445 + GFF6395 0.32 -0.2
70,445 + GFF6395 0.32 +0.1
70,445 + GFF6395 0.32 -0.5
70,445 + GFF6395 0.32 +0.8
70,445 + GFF6395 0.32 -0.3
70,446 - GFF6395 0.32 +1.0
70,446 - GFF6395 0.32 -0.1
70,446 - GFF6395 0.32 -0.8
70,446 - GFF6395 0.32 -0.6
70,446 - GFF6395 0.32 -0.1
70,446 - GFF6395 0.32 +0.2
70,446 - GFF6395 0.32 +1.0
70,446 - GFF6395 0.32 +0.2
70,446 - GFF6395 0.32 +0.6
70,446 - GFF6395 0.32 -0.0
70,446 - GFF6395 0.32 -0.1
70,493 + GFF6395 0.37 +0.4
70,493 + GFF6395 0.37 -0.6
70,493 + GFF6395 0.37 -0.3
70,493 + GFF6395 0.37 -0.1
70,493 + GFF6395 0.37 +0.4
70,493 + GFF6395 0.37 +0.4
70,493 + GFF6395 0.37 -0.2
70,494 - GFF6395 0.37 -0.3
70,494 - GFF6395 0.37 -0.3
70,598 + GFF6395 0.48 -0.4
70,598 + GFF6395 0.48 -1.3
70,598 + GFF6395 0.48 +0.8
70,598 + GFF6395 0.48 +0.9
70,871 + GFF6395 0.77 -1.0
70,871 + GFF6395 0.77 -0.4
70,871 + GFF6395 0.77 -0.2
70,872 - GFF6395 0.77 -0.7
70,872 - GFF6395 0.77 -0.6
70,872 - GFF6395 0.77 -0.3
70,878 - GFF6395 0.78 +0.7
70,878 - GFF6395 0.78 -0.2
70,946 + GFF6395 0.85 +0.4
71,081 + +0.1
71,081 + -1.1
71,082 - -1.4
71,082 - +0.1
71,082 - -0.4
71,082 - -1.9

Or see this region's nucleotide sequence