Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6382 and GFF6383 are separated by 50 nucleotides GFF6383 and GFF6384 are separated by 41 nucleotides GFF6384 and GFF6385 are separated by 21 nucleotides GFF6385 and GFF6386 are separated by 8 nucleotides
GFF6382 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 54,739 to 55,944
GFF6382
GFF6383 - FIG00440100: hypothetical protein, at 55,995 to 56,579
GFF6383
GFF6384 - Peptide synthase, at 56,621 to 57,262
GFF6384
GFF6385 - Mll4878 protein, at 57,284 to 58,201
GFF6385
GFF6386 - 6-hydroxynicotinate reductase (EC 1.3.7.1), at 58,210 to 59,838
GFF6386
Position (kb) 56
57
58 Strain fitness (log2 ratio) -2
-1
0
1 at 55.805 kb on + strand, within GFF6382 at 55.806 kb on - strand, within GFF6382 at 55.835 kb on + strand at 55.835 kb on + strand at 55.835 kb on + strand at 55.836 kb on - strand at 55.836 kb on - strand at 55.983 kb on + strand at 55.983 kb on + strand at 55.983 kb on + strand at 55.984 kb on - strand at 55.984 kb on - strand at 56.450 kb on - strand, within GFF6383 at 56.781 kb on + strand, within GFF6384 at 56.781 kb on + strand, within GFF6384 at 56.781 kb on + strand, within GFF6384 at 57.027 kb on + strand, within GFF6384 at 57.028 kb on - strand, within GFF6384 at 57.028 kb on - strand, within GFF6384 at 57.086 kb on + strand, within GFF6384 at 57.086 kb on + strand, within GFF6384 at 57.086 kb on + strand, within GFF6384 at 57.342 kb on - strand at 57.342 kb on - strand at 57.393 kb on - strand, within GFF6385 at 57.885 kb on + strand, within GFF6385 at 57.885 kb on + strand, within GFF6385 at 58.111 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 55,805 + GFF6382 0.88 +1.1 55,806 - GFF6382 0.88 +0.2 55,835 + -0.4 55,835 + -0.2 55,835 + -0.7 55,836 - -0.2 55,836 - +0.1 55,983 + -0.4 55,983 + +1.7 55,983 + -0.1 55,984 - -1.6 55,984 - -1.3 56,450 - GFF6383 0.78 +0.1 56,781 + GFF6384 0.25 -0.7 56,781 + GFF6384 0.25 -1.1 56,781 + GFF6384 0.25 -2.2 57,027 + GFF6384 0.63 -0.5 57,028 - GFF6384 0.63 +1.3 57,028 - GFF6384 0.63 -1.1 57,086 + GFF6384 0.72 +0.2 57,086 + GFF6384 0.72 -0.9 57,086 + GFF6384 0.72 +0.7 57,342 - +0.1 57,342 - +0.3 57,393 - GFF6385 0.12 -0.1 57,885 + GFF6385 0.65 -0.5 57,885 + GFF6385 0.65 -0.6 58,111 - -0.1
Or see this region's nucleotide sequence