Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF636 and GFF637 are separated by 229 nucleotides GFF637 and GFF638 are separated by 7 nucleotides GFF638 and GFF639 are separated by 118 nucleotides
GFF636 - Urea ABC transporter, substrate-binding protein UrtA, at 685,285 to 686,541
GFF636
GFF637 - Two-component system sensor histidine kinase/response regulator hybrid, at 686,771 to 690,163
GFF637
GFF638 - Two-component transcriptional response regulator, LuxR family, at 690,171 to 691,043
GFF638
GFF639 - hypothetical protein, at 691,162 to 691,932
GFF639
Position (kb) 686
687
688
689
690
691 Strain fitness (log2 ratio) -2
-1
0
1 at 685.866 kb on - strand, within GFF636 at 685.869 kb on - strand, within GFF636 at 685.869 kb on - strand, within GFF636 at 685.869 kb on - strand, within GFF636 at 685.935 kb on + strand, within GFF636 at 685.936 kb on - strand, within GFF636 at 685.949 kb on + strand, within GFF636 at 685.949 kb on + strand, within GFF636 at 686.045 kb on + strand, within GFF636 at 686.079 kb on - strand, within GFF636 at 686.094 kb on - strand, within GFF636 at 686.656 kb on - strand at 686.816 kb on + strand at 686.852 kb on + strand at 686.864 kb on + strand at 687.050 kb on + strand at 687.053 kb on + strand at 687.054 kb on - strand at 687.234 kb on - strand, within GFF637 at 687.377 kb on + strand, within GFF637 at 687.377 kb on + strand, within GFF637 at 687.377 kb on + strand, within GFF637 at 687.501 kb on - strand, within GFF637 at 687.683 kb on + strand, within GFF637 at 687.684 kb on - strand, within GFF637 at 687.702 kb on - strand, within GFF637 at 687.788 kb on + strand, within GFF637 at 687.938 kb on + strand, within GFF637 at 687.939 kb on - strand, within GFF637 at 687.939 kb on - strand, within GFF637 at 688.046 kb on + strand, within GFF637 at 688.214 kb on + strand, within GFF637 at 688.217 kb on + strand, within GFF637 at 688.218 kb on - strand, within GFF637 at 688.218 kb on - strand, within GFF637 at 688.478 kb on + strand, within GFF637 at 688.479 kb on - strand, within GFF637 at 688.479 kb on - strand, within GFF637 at 688.536 kb on - strand, within GFF637 at 688.796 kb on + strand, within GFF637 at 689.084 kb on + strand, within GFF637 at 689.085 kb on - strand, within GFF637 at 689.445 kb on - strand, within GFF637 at 689.748 kb on + strand, within GFF637 at 689.748 kb on + strand, within GFF637 at 689.749 kb on - strand, within GFF637 at 689.749 kb on - strand, within GFF637 at 689.749 kb on - strand, within GFF637 at 689.749 kb on - strand, within GFF637 at 690.255 kb on + strand at 690.325 kb on + strand, within GFF638 at 690.480 kb on + strand, within GFF638 at 690.480 kb on + strand, within GFF638 at 690.480 kb on + strand, within GFF638 at 690.481 kb on - strand, within GFF638 at 691.082 kb on - strand at 691.105 kb on - strand at 691.105 kb on - strand at 691.105 kb on - strand at 691.105 kb on - strand at 691.106 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 685,866 - GFF636 0.46 -0.6 685,869 - GFF636 0.46 -0.4 685,869 - GFF636 0.46 -1.1 685,869 - GFF636 0.46 -0.6 685,935 + GFF636 0.52 +0.1 685,936 - GFF636 0.52 -1.3 685,949 + GFF636 0.53 -0.6 685,949 + GFF636 0.53 -0.8 686,045 + GFF636 0.60 +1.1 686,079 - GFF636 0.63 +0.6 686,094 - GFF636 0.64 +0.1 686,656 - +0.9 686,816 + -0.4 686,852 + -0.1 686,864 + -1.2 687,050 + +0.6 687,053 + +0.0 687,054 - -1.0 687,234 - GFF637 0.14 -0.1 687,377 + GFF637 0.18 -1.0 687,377 + GFF637 0.18 +0.2 687,377 + GFF637 0.18 -1.8 687,501 - GFF637 0.22 -0.6 687,683 + GFF637 0.27 +0.6 687,684 - GFF637 0.27 -1.3 687,702 - GFF637 0.27 -0.3 687,788 + GFF637 0.30 -0.2 687,938 + GFF637 0.34 -0.4 687,939 - GFF637 0.34 -0.8 687,939 - GFF637 0.34 -0.4 688,046 + GFF637 0.38 -0.5 688,214 + GFF637 0.43 -1.6 688,217 + GFF637 0.43 -1.2 688,218 - GFF637 0.43 -0.7 688,218 - GFF637 0.43 +0.6 688,478 + GFF637 0.50 +1.0 688,479 - GFF637 0.50 +0.8 688,479 - GFF637 0.50 -0.7 688,536 - GFF637 0.52 +0.3 688,796 + GFF637 0.60 -0.0 689,084 + GFF637 0.68 +0.7 689,085 - GFF637 0.68 -0.5 689,445 - GFF637 0.79 +0.1 689,748 + GFF637 0.88 +0.0 689,748 + GFF637 0.88 -0.4 689,749 - GFF637 0.88 +0.0 689,749 - GFF637 0.88 -0.9 689,749 - GFF637 0.88 -1.6 689,749 - GFF637 0.88 -0.8 690,255 + +0.3 690,325 + GFF638 0.18 -0.4 690,480 + GFF638 0.35 +0.6 690,480 + GFF638 0.35 +0.6 690,480 + GFF638 0.35 +1.0 690,481 - GFF638 0.36 -0.6 691,082 - -0.7 691,105 - +0.2 691,105 - -0.3 691,105 - +0.5 691,105 - -0.8 691,106 + -0.6
Or see this region's nucleotide sequence