Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6366 and GFF6367 overlap by 4 nucleotides GFF6367 and GFF6368 are separated by 0 nucleotides GFF6368 and GFF6369 overlap by 4 nucleotides
GFF6366 - T6SS component TssG (ImpH/VasB), at 35,106 to 36,281
GFF6366
GFF6367 - T6SS component TssF (ImpG/VasA), at 36,278 to 38,149
GFF6367
GFF6368 - T6SS lysozyme-like component TssE, at 38,150 to 38,698
GFF6368
GFF6369 - T6SS associated component TagJ (ImpE), at 38,695 to 39,558
GFF6369
Position (kb) 36
37
38
39 Strain fitness (log2 ratio) -2
-1
0
1 at 35.315 kb on - strand, within GFF6366 at 35.580 kb on + strand, within GFF6366 at 35.580 kb on + strand, within GFF6366 at 35.581 kb on - strand, within GFF6366 at 35.581 kb on - strand, within GFF6366 at 35.704 kb on + strand, within GFF6366 at 35.705 kb on - strand, within GFF6366 at 35.705 kb on - strand, within GFF6366 at 35.705 kb on - strand, within GFF6366 at 35.774 kb on - strand, within GFF6366 at 36.194 kb on - strand at 36.194 kb on - strand at 36.417 kb on + strand at 36.586 kb on - strand, within GFF6367 at 36.651 kb on + strand, within GFF6367 at 36.651 kb on + strand, within GFF6367 at 36.742 kb on + strand, within GFF6367 at 36.743 kb on - strand, within GFF6367 at 36.897 kb on + strand, within GFF6367 at 36.897 kb on + strand, within GFF6367 at 36.897 kb on + strand, within GFF6367 at 36.897 kb on + strand, within GFF6367 at 36.916 kb on - strand, within GFF6367 at 36.916 kb on - strand, within GFF6367 at 36.985 kb on - strand, within GFF6367 at 37.363 kb on - strand, within GFF6367 at 37.363 kb on - strand, within GFF6367 at 38.104 kb on + strand at 38.105 kb on - strand at 38.106 kb on + strand at 38.106 kb on + strand at 38.127 kb on + strand at 38.434 kb on - strand, within GFF6368 at 38.795 kb on + strand, within GFF6369
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 35,315 - GFF6366 0.18 -1.3 35,580 + GFF6366 0.40 -0.4 35,580 + GFF6366 0.40 +0.7 35,581 - GFF6366 0.40 -0.3 35,581 - GFF6366 0.40 +0.3 35,704 + GFF6366 0.51 +0.4 35,705 - GFF6366 0.51 +0.9 35,705 - GFF6366 0.51 -1.3 35,705 - GFF6366 0.51 -0.7 35,774 - GFF6366 0.57 +0.7 36,194 - -0.9 36,194 - +1.3 36,417 + -0.3 36,586 - GFF6367 0.16 -0.1 36,651 + GFF6367 0.20 +0.0 36,651 + GFF6367 0.20 -2.0 36,742 + GFF6367 0.25 -0.6 36,743 - GFF6367 0.25 -1.4 36,897 + GFF6367 0.33 -1.6 36,897 + GFF6367 0.33 -0.1 36,897 + GFF6367 0.33 -0.0 36,897 + GFF6367 0.33 +0.1 36,916 - GFF6367 0.34 +0.3 36,916 - GFF6367 0.34 +0.3 36,985 - GFF6367 0.38 +0.8 37,363 - GFF6367 0.58 -2.0 37,363 - GFF6367 0.58 -0.7 38,104 + +0.1 38,105 - -0.2 38,106 + +1.6 38,106 + +0.3 38,127 + -0.3 38,434 - GFF6368 0.52 -0.3 38,795 + GFF6369 0.12 +0.0
Or see this region's nucleotide sequence