Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6350 and GFF6351 are separated by 31 nucleotides GFF6351 and GFF6352 are separated by 1 nucleotides
GFF6350 - T6SS Serine/threonine protein kinase (EC 2.7.11.1) PpkA, at 11,737 to 13,650
GFF6350
GFF6351 - T6SS associated component TagF (ImpM), at 13,682 to 14,395
GFF6351
GFF6352 - T6SS component TssM (IcmF/VasK), at 14,397 to 18,056
GFF6352
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1 at 12.713 kb on + strand, within GFF6350 at 12.713 kb on + strand, within GFF6350 at 12.713 kb on + strand, within GFF6350 at 12.713 kb on + strand, within GFF6350 at 12.713 kb on + strand, within GFF6350 at 12.713 kb on + strand, within GFF6350 at 12.713 kb on + strand, within GFF6350 at 12.713 kb on + strand, within GFF6350 at 12.714 kb on - strand, within GFF6350 at 12.714 kb on - strand, within GFF6350 at 12.714 kb on - strand, within GFF6350 at 12.714 kb on - strand, within GFF6350 at 12.714 kb on - strand, within GFF6350 at 12.714 kb on - strand, within GFF6350 at 12.714 kb on - strand, within GFF6350 at 12.714 kb on - strand, within GFF6350 at 12.714 kb on - strand, within GFF6350 at 12.863 kb on + strand, within GFF6350 at 12.863 kb on + strand, within GFF6350 at 12.864 kb on - strand, within GFF6350 at 12.923 kb on + strand, within GFF6350 at 12.923 kb on + strand, within GFF6350 at 12.923 kb on + strand, within GFF6350 at 12.923 kb on + strand, within GFF6350 at 12.944 kb on + strand, within GFF6350 at 12.945 kb on - strand, within GFF6350 at 12.989 kb on + strand, within GFF6350 at 12.990 kb on - strand, within GFF6350 at 12.990 kb on - strand, within GFF6350 at 12.990 kb on - strand, within GFF6350 at 12.990 kb on - strand, within GFF6350 at 13.263 kb on - strand, within GFF6350 at 13.263 kb on - strand, within GFF6350 at 13.280 kb on + strand, within GFF6350 at 13.281 kb on - strand, within GFF6350 at 13.281 kb on - strand, within GFF6350 at 13.463 kb on + strand at 13.463 kb on + strand at 13.463 kb on + strand at 13.463 kb on + strand at 13.463 kb on + strand at 13.463 kb on + strand at 13.463 kb on + strand at 13.464 kb on - strand at 13.464 kb on - strand at 13.464 kb on - strand at 13.464 kb on - strand at 13.464 kb on - strand at 13.503 kb on - strand at 13.797 kb on + strand, within GFF6351 at 13.879 kb on + strand, within GFF6351 at 13.879 kb on + strand, within GFF6351 at 14.025 kb on + strand, within GFF6351 at 14.025 kb on + strand, within GFF6351 at 14.062 kb on - strand, within GFF6351 at 14.103 kb on + strand, within GFF6351 at 14.205 kb on + strand, within GFF6351 at 14.206 kb on - strand, within GFF6351 at 14.206 kb on - strand, within GFF6351 at 14.452 kb on + strand at 14.452 kb on + strand at 14.452 kb on + strand at 14.452 kb on + strand at 14.453 kb on - strand at 14.702 kb on - strand at 14.860 kb on + strand, within GFF6352 at 15.277 kb on + strand, within GFF6352 at 15.277 kb on + strand, within GFF6352 at 15.278 kb on - strand, within GFF6352 at 15.278 kb on - strand, within GFF6352
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 12,713 + GFF6350 0.51 -0.7 12,713 + GFF6350 0.51 +0.1 12,713 + GFF6350 0.51 -0.8 12,713 + GFF6350 0.51 -0.3 12,713 + GFF6350 0.51 -0.2 12,713 + GFF6350 0.51 -0.3 12,713 + GFF6350 0.51 -1.6 12,713 + GFF6350 0.51 -1.8 12,714 - GFF6350 0.51 -0.4 12,714 - GFF6350 0.51 +0.4 12,714 - GFF6350 0.51 -0.6 12,714 - GFF6350 0.51 +0.7 12,714 - GFF6350 0.51 -0.4 12,714 - GFF6350 0.51 +0.7 12,714 - GFF6350 0.51 -0.5 12,714 - GFF6350 0.51 -0.8 12,714 - GFF6350 0.51 +0.6 12,863 + GFF6350 0.59 +0.3 12,863 + GFF6350 0.59 +0.6 12,864 - GFF6350 0.59 -0.2 12,923 + GFF6350 0.62 -0.9 12,923 + GFF6350 0.62 +0.7 12,923 + GFF6350 0.62 -0.9 12,923 + GFF6350 0.62 +1.5 12,944 + GFF6350 0.63 -0.2 12,945 - GFF6350 0.63 +0.7 12,989 + GFF6350 0.65 -0.8 12,990 - GFF6350 0.65 +0.0 12,990 - GFF6350 0.65 -1.5 12,990 - GFF6350 0.65 -0.5 12,990 - GFF6350 0.65 -0.7 13,263 - GFF6350 0.80 -0.4 13,263 - GFF6350 0.80 -0.4 13,280 + GFF6350 0.81 -1.1 13,281 - GFF6350 0.81 -1.3 13,281 - GFF6350 0.81 -0.5 13,463 + +1.2 13,463 + -0.3 13,463 + +1.5 13,463 + +0.6 13,463 + +0.8 13,463 + +1.3 13,463 + +0.1 13,464 - -0.2 13,464 - +0.5 13,464 - -0.4 13,464 - -0.4 13,464 - -0.4 13,503 - -0.4 13,797 + GFF6351 0.16 -1.9 13,879 + GFF6351 0.28 -1.6 13,879 + GFF6351 0.28 +0.9 14,025 + GFF6351 0.48 -0.3 14,025 + GFF6351 0.48 -0.2 14,062 - GFF6351 0.53 -0.5 14,103 + GFF6351 0.59 -0.1 14,205 + GFF6351 0.73 +0.1 14,206 - GFF6351 0.73 -0.4 14,206 - GFF6351 0.73 -0.2 14,452 + -0.4 14,452 + -0.5 14,452 + -0.9 14,452 + +0.1 14,453 - -0.2 14,702 - +0.1 14,860 + GFF6352 0.13 -0.1 15,277 + GFF6352 0.24 +0.3 15,277 + GFF6352 0.24 -0.1 15,278 - GFF6352 0.24 -0.5 15,278 - GFF6352 0.24 -0.6
Or see this region's nucleotide sequence