Strain Fitness in Variovorax sp. SCN45 around GFF6314

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
101,831	+				-0.0
101,831	+				+0.5
101,832	-				-1.7
101,832	-				-0.2
101,832	-				-1.8
101,832	-				+0.2
101,832	-				-0.1
102,190	+		GFF6313	0.48	-0.5
102,190	+		GFF6313	0.48	-0.1
102,190	+		GFF6313	0.48	-0.1
102,190	+		GFF6313	0.48	-0.6
102,190	+		GFF6313	0.48	-0.1
102,190	+		GFF6313	0.48	-3.4
102,191	-		GFF6313	0.48	-0.1
102,191	-		GFF6313	0.48	+1.9
102,191	-		GFF6313	0.48	+0.2
102,191	-		GFF6313	0.48	+0.2
102,191	-		GFF6313	0.48	+0.4
102,191	-		GFF6313	0.48	+1.6
102,191	-		GFF6313	0.48	+0.1
102,191	-		GFF6313	0.48	-0.6
102,191	-		GFF6313	0.48	-0.3
102,191	-		GFF6313	0.48	-1.8
102,191	-		GFF6313	0.48	-0.8
102,191	-		GFF6313	0.48	+0.5
102,191	-		GFF6313	0.48	-0.1
102,191	-		GFF6313	0.48	+0.3
102,191	-		GFF6313	0.48	+0.5
102,191	-		GFF6313	0.48	-0.8
102,209	+		GFF6313	0.50	-0.5
102,209	+		GFF6313	0.50	-0.7
102,209	+		GFF6313	0.50	-1.0
102,209	+		GFF6313	0.50	-0.5
102,209	+		GFF6313	0.50	+1.9
102,209	+		GFF6313	0.50	-0.7
102,209	+		GFF6313	0.50	-0.4
102,209	+		GFF6313	0.50	+1.9
102,209	+		GFF6313	0.50	-0.3
102,210	-		GFF6313	0.50	-1.0
102,210	-		GFF6313	0.50	-0.4
102,210	-		GFF6313	0.50	-0.1
102,210	-		GFF6313	0.50	+0.4
102,210	-		GFF6313	0.50	+0.5
102,210	-		GFF6313	0.50	-0.2
102,210	-		GFF6313	0.50	-0.1
102,210	-		GFF6313	0.50	-0.2
102,210	-		GFF6313	0.50	-0.2
102,210	-		GFF6313	0.50	+0.0
102,215	+		GFF6313	0.51	-1.5
102,215	+		GFF6313	0.51	-0.1
102,215	+		GFF6313	0.51	-0.2
102,215	+		GFF6313	0.51	+0.5
102,215	+		GFF6313	0.51	-0.2
102,215	+		GFF6313	0.51	+0.1
102,215	+		GFF6313	0.51	+1.1
102,215	+		GFF6313	0.51	+1.0
102,215	+		GFF6313	0.51	+0.5
102,215	+		GFF6313	0.51	-1.9
102,215	+		GFF6313	0.51	-0.3
102,215	+		GFF6313	0.51	-0.8
102,215	+		GFF6313	0.51	+1.3
102,215	+		GFF6313	0.51	-0.1
102,215	+		GFF6313	0.51	-0.7
102,216	-		GFF6313	0.51	-0.7
102,216	-		GFF6313	0.51	-0.1
102,216	-		GFF6313	0.51	-0.5
102,216	-		GFF6313	0.51	+0.5
102,216	-		GFF6313	0.51	-0.6
102,216	-		GFF6313	0.51	+0.1
102,216	-		GFF6313	0.51	+0.2
102,216	-		GFF6313	0.51	-0.4
102,216	-		GFF6313	0.51	-1.5
102,216	-		GFF6313	0.51	+0.3
102,216	-		GFF6313	0.51	-0.1
102,216	-		GFF6313	0.51	-0.1
102,216	-		GFF6313	0.51	+0.0
102,216	-		GFF6313	0.51	+0.3
102,509	+		GFF6313	0.87	-0.0
102,509	+		GFF6313	0.87	-0.1
102,509	+		GFF6313	0.87	-0.4
102,509	+		GFF6313	0.87	-0.7
102,509	+		GFF6313	0.87	+0.3
102,509	+		GFF6313	0.87	-0.3
102,509	+		GFF6313	0.87	+0.3
102,510	-		GFF6313	0.87	+0.6
102,510	-		GFF6313	0.87	-0.2
102,510	-		GFF6313	0.87	+0.2
102,510	-		GFF6313	0.87	+0.2
102,510	-		GFF6313	0.87	+0.8
102,510	-		GFF6313	0.87	-0.7
102,510	-		GFF6313	0.87	-2.0
102,510	-		GFF6313	0.87	-0.5
102,510	-		GFF6313	0.87	+0.3
102,510	-		GFF6313	0.87	-0.4
102,510	-		GFF6313	0.87	+0.5
102,510	-		GFF6313	0.87	-0.3
102,510	-		GFF6313	0.87	-0.9
102,510	-		GFF6313	0.87	+1.3
102,671	+				+0.3
102,671	+				+1.2
102,671	+				+0.2
102,671	+				-0.2
102,671	+				-0.2
102,671	+				+0.9
102,671	+				+1.5
102,671	+				-0.1
102,672	-				+0.6
102,672	-				+0.1
102,672	-				+0.1
102,672	-				-0.5
102,672	-				+0.3
102,672	-				-0.2
102,692	+				-0.8
102,692	+				+0.9
102,692	+				+1.5
102,692	+				-0.9
102,693	-				+0.7
102,693	-				+0.5
102,693	-				-0.7
102,693	-				-0.5
102,693	-				-1.1
102,693	-				+0.1
102,693	-				-0.4
102,693	-				+0.4
102,693	-				-0.7
102,693	-				+0.4
102,693	-				+0.2
102,726	+				-0.1
102,726	+				-0.0
102,726	+				+0.3
102,726	+				+0.1
102,726	+				-0.7
102,726	+				-1.6
102,727	-				+0.9
102,727	-				-0.0
102,727	-				-0.3
102,727	-				-2.7
102,727	-				+1.3
102,727	-				-0.1
102,727	-				+0.1
102,727	-				+0.2
102,776	+				-0.2
102,776	+				-0.6
102,776	+				-0.0
102,776	+				+0.9
102,776	+				-0.1
102,776	+				+0.9
102,776	+				-0.0
102,776	+				-1.4
102,776	+				+0.9
102,776	+				-0.1
102,776	+				-0.2
102,776	+				+0.9
102,776	+				-1.8
102,777	-				-0.1
102,777	-				-1.3
102,777	-				-0.1
102,777	-				+0.2
102,777	-				-1.0
102,777	-				-0.8
102,777	-				+0.4
102,777	-				-0.5
102,777	-				-0.5
102,777	-				+0.1
102,777	-				-0.4
102,777	-				-1.3
102,777	-				+0.4
102,777	-				+0.9
102,777	-				+0.5
102,778	+				+0.4
102,778	+				-1.1
102,778	+				+0.5
102,778	+				+0.1
102,778	+				+0.1
102,778	+				-0.3
102,778	+				-0.5
102,778	+				+0.1
102,778	+				-1.9
102,778	+				-0.7
102,778	+				-0.4
102,778	+				-0.4
102,778	+				-0.7
102,778	+				-0.2
102,778	+				+0.8
102,778	+				-1.2
102,778	+				-0.9
102,778	+				-0.1
102,778	+				+0.4
102,778	+				+0.7
102,778	+				-0.8
102,778	+				-0.6
102,778	+				-1.0
102,778	+				+0.1
102,778	+				-0.2
102,779	-				-0.0
102,779	-				+0.6
102,779	-				-0.5
102,779	-				+0.5
102,779	-				+1.3
102,779	-				-1.6
102,779	-				-0.3
102,779	-				-0.6
102,779	-				-1.0
102,779	-				-0.5
102,779	-				+0.3
102,779	-				-0.1
102,779	-				+0.1
102,779	-				+0.0
102,779	-				+0.2
102,779	-				-0.6
102,779	-				+0.2
102,779	-				-0.3
102,779	-				+0.2
102,779	-				+0.6
102,779	-				-0.0
102,779	-				-0.3
102,779	-				+0.3
102,779	-				-0.1
102,779	-				-0.2
102,779	-				-0.5
102,779	-				+0.0
102,779	-				-0.9
102,805	+				-0.9
102,805	+				-0.3
102,805	+				+0.4
102,806	-				-0.3
102,948	+		GFF6314	0.38	+0.1
102,948	+		GFF6314	0.38	-1.8
102,948	+		GFF6314	0.38	-0.4
102,948	+		GFF6314	0.38	+0.7
102,948	+		GFF6314	0.38	+1.5
102,948	+		GFF6314	0.38	-0.1
102,948	+		GFF6314	0.38	-0.1
102,948	+		GFF6314	0.38	-1.4
102,948	+		GFF6314	0.38	-0.7
102,948	+		GFF6314	0.38	-0.5
102,948	+		GFF6314	0.38	-1.1
102,948	+		GFF6314	0.38	+0.7
102,949	-		GFF6314	0.38	-0.2
102,949	-		GFF6314	0.38	-0.7
102,949	-		GFF6314	0.38	-0.7
102,949	-		GFF6314	0.38	+0.5
102,949	-		GFF6314	0.38	+0.4
102,949	-		GFF6314	0.38	-0.7
102,949	-		GFF6314	0.38	-0.0
102,949	-		GFF6314	0.38	+1.0
102,949	-		GFF6314	0.38	+1.1
102,949	-		GFF6314	0.38	+0.4
102,949	-		GFF6314	0.38	+0.1
102,949	-		GFF6314	0.38	-0.7
102,949	-		GFF6314	0.38	-0.3
102,949	-		GFF6314	0.38	-0.4
102,949	-		GFF6314	0.38	-0.2
102,949	-		GFF6314	0.38	+0.3
102,949	-		GFF6314	0.38	-0.2
102,949	-		GFF6314	0.38	+0.7
103,011	+		GFF6314	0.56	-0.1
103,011	+		GFF6314	0.56	-1.1
103,011	+		GFF6314	0.56	-0.2
103,011	+		GFF6314	0.56	+0.3
103,011	+		GFF6314	0.56	+0.6
103,011	+		GFF6314	0.56	-0.2
103,011	+		GFF6314	0.56	+1.3
103,011	+		GFF6314	0.56	-0.8
103,011	+		GFF6314	0.56	-0.4
103,012	-		GFF6314	0.56	-0.5
103,012	-		GFF6314	0.56	-1.3
103,012	-		GFF6314	0.56	+0.6
103,012	-		GFF6314	0.56	-0.0
103,012	-		GFF6314	0.56	-0.6
103,012	-		GFF6314	0.56	-0.2
103,012	-		GFF6314	0.56	-0.3
103,012	-		GFF6314	0.56	+0.1
103,078	+		GFF6314	0.75	-0.6
103,079	-		GFF6314	0.75	+1.9
103,231	+				-1.5
103,231	+				+0.5
103,231	+				-0.3
103,231	+				+0.9
103,231	+				+0.3
103,231	+				-0.2
103,231	+				-2.3
103,231	+				-0.0
103,231	+				-0.7
103,231	+				+0.2
103,231	+				-0.1
103,231	+				-0.4
103,231	+				+0.1
103,232	-				-0.2
103,232	-				+0.9
103,232	-				+0.3
103,232	-				+0.9
103,232	-				-0.3
103,232	-				+0.2
103,232	-				-0.7
103,232	-				-1.5
103,267	+				-1.0
103,267	+				+0.0
103,267	+				+1.1
103,267	+				-0.8
103,267	+				-0.7
103,267	+				-0.5
103,268	-				+0.5
103,268	-				+0.2
103,268	-				+0.3
103,285	+				-0.3
103,285	+				-0.7
103,285	+				-0.0
103,285	+				+1.3
103,285	+				-0.2
103,285	+				+0.1
103,286	-				-0.9
103,286	-				+0.6
103,286	-				+0.3
103,286	-				-0.4
103,286	-				+0.6
103,286	-				-0.2
103,286	-				-0.9
103,286	-				-0.1
103,350	+				-0.5
103,351	-				+0.9
103,351	-				+0.5
103,358	+				-0.8
103,358	+				-1.3
103,358	+				-0.1
103,358	+				+0.5
103,358	+				+0.0
103,359	-				+0.8
103,359	-				+0.6
103,364	+				-0.2
103,364	+				+0.6
103,365	-				-0.4
103,371	+				-0.4
103,372	-				+0.5
103,393	+				-0.5
103,394	-				+0.2
103,394	-				-0.1
103,394	-				-0.5
103,404	+				-0.2
103,404	+				-0.6
103,404	+				-0.7
103,405	-				+0.5
103,405	-				+1.1
103,433	+				-0.5
103,433	+				-0.5
103,433	+				-0.5
103,433	+				-0.1
103,433	+				-0.7
103,434	-				+1.1
103,434	-				-1.3
103,434	-				-1.3
103,434	-				-0.2
103,434	-				-0.1
103,452	-				-0.5
103,452	-				-0.1
103,452	-				+0.2
103,484	+				-0.6
103,484	+				+1.4
103,484	+				-1.2
103,485	-				+0.3
103,520	+				-0.7
103,521	-				-0.5
103,521	-				-2.6
103,521	-				+0.4
103,521	-				+0.5
103,521	-				+0.2
103,559	+				-0.4
103,559	+				-0.1
103,559	+				+0.6
103,559	+				-0.4
103,560	-				+0.4
103,560	-				+0.2
103,575	-				+0.5
103,586	+				-1.5
103,586	+				-0.1
103,586	+				-0.3
103,587	-				-0.4
103,587	-				-2.0
103,587	-				-0.3
103,598	+				-0.2
103,598	+				-1.1
103,598	+				-0.5
103,598	+				-0.1
103,599	-				-0.7
103,607	+				-0.6
103,607	+				+0.2
103,607	+				+0.2
103,607	+				+0.4
103,607	+				-0.8
103,607	+				+0.5
103,607	+				+0.6
103,608	-				-0.5
103,608	-				+0.3
103,608	-				-0.1
103,608	-				-0.5
103,608	-				-0.2
103,608	-				+0.3
103,619	+				-1.3
103,653	+				-0.5
103,653	+				+0.1
103,653	+				-0.1
103,653	+				-0.8
103,653	+				-0.0
103,653	+				-0.5
103,654	-				+0.9
103,654	-				+0.9
103,744	+				-0.3
103,744	+				-0.0
103,744	+				+0.3
103,744	+				-1.1
103,744	+				+0.4
103,744	+				-0.1
103,745	-				-0.7
103,745	-				-0.5
103,745	-				-0.3
103,745	-				-0.6
103,753	+				+0.6
103,753	+				+0.2
103,754	-				-1.1
103,754	-				-0.2
103,781	+				-0.5
103,782	-				+0.2
103,782	-				-1.4
103,782	-				+0.1
103,782	-				+1.2
103,782	-				-0.4
103,782	-				-0.7
103,861	+				+0.0
103,861	+				-1.1
103,862	-				-0.3
103,867	-				+1.9
103,867	-				+0.6
103,872	+				-0.7
103,872	+				+0.4
103,873	-				-0.5
103,873	-				-0.3
103,873	-				-0.0
103,877	-				+1.5
103,908	+				+0.7
103,908	+				+0.6
103,909	-				-1.1
103,909	-				+1.9
103,914	+				-0.6
103,962	+				-0.3
104,051	+				-0.2
104,051	+				+0.3
104,051	+				-0.3
104,051	+				-0.9
104,051	+				-0.6
104,052	-				+0.9
104,052	-				+0.5
104,052	-				-0.6
104,052	-				+0.3
104,052	-				-2.0
104,052	-				+0.2
104,052	-				-0.1
104,052	-				-0.2
104,052	-				-0.1
104,052	-				-0.9
104,069	+				-0.6
104,069	+				-0.5
104,069	+				-0.1
104,069	+				-0.4
104,069	+				-1.1
104,069	+				-0.6
104,070	-				+0.3
104,070	-				-1.8
104,070	-				+0.6
104,070	-				-1.0
104,070	-				+0.3
104,071	+				-0.3
104,071	+				-0.1
104,071	+				-0.5
104,071	+				+0.4
104,071	+				+0.2
104,072	-				-0.8
104,136	+				+0.3
104,136	+				+0.1
104,144	+				-0.3
104,144	+				-0.7
104,144	+				-0.2
104,144	+				-0.7
104,145	-				-1.3