Strain Fitness in Variovorax sp. SCN45 around GFF6304

Experiment: phage_bap4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	phage_bap4
92,173	+				-0.7
92,173	+				-0.7
92,173	+				-1.9
92,174	-				-0.4
92,174	-				+0.3
92,225	+		GFF6303	0.12	-0.4
92,225	+		GFF6303	0.12	+0.3
92,225	+		GFF6303	0.12	-1.7
92,225	+		GFF6303	0.12	-0.7
92,225	+		GFF6303	0.12	-0.5
92,226	-		GFF6303	0.12	+0.1
92,226	-		GFF6303	0.12	+0.1
92,226	-		GFF6303	0.12	+2.9
92,226	-		GFF6303	0.12	+0.7
92,226	-		GFF6303	0.12	-0.3
92,226	-		GFF6303	0.12	-0.9
92,226	-		GFF6303	0.12	-0.9
92,318	+		GFF6303	0.22	+2.1
92,318	+		GFF6303	0.22	+0.3
92,318	+		GFF6303	0.22	+0.5
92,319	-		GFF6303	0.22	-0.6
92,319	-		GFF6303	0.22	-1.7
92,319	-		GFF6303	0.22	-1.2
92,319	-		GFF6303	0.22	+0.3
92,319	-		GFF6303	0.22	-0.4
92,319	-		GFF6303	0.22	-0.9
92,319	-		GFF6303	0.22	+0.2
92,349	-		GFF6303	0.25	-2.4
92,528	+		GFF6303	0.43	-0.9
92,529	-		GFF6303	0.43	+0.6
92,615	+		GFF6303	0.52	-0.2
92,615	+		GFF6303	0.52	+0.6
92,615	+		GFF6303	0.52	-0.0
92,615	+		GFF6303	0.52	-1.0
92,615	+		GFF6303	0.52	-0.5
92,615	+		GFF6303	0.52	-1.5
92,615	+		GFF6303	0.52	-0.1
92,615	+		GFF6303	0.52	-0.9
92,615	+		GFF6303	0.52	-0.9
92,615	+		GFF6303	0.52	-0.0
92,615	+		GFF6303	0.52	+0.9
92,615	+		GFF6303	0.52	-0.3
92,615	+		GFF6303	0.52	-1.1
92,616	-		GFF6303	0.52	-0.4
92,616	-		GFF6303	0.52	+0.4
92,616	-		GFF6303	0.52	+1.0
92,616	-		GFF6303	0.52	-1.1
92,616	-		GFF6303	0.52	+0.5
92,616	-		GFF6303	0.52	-0.3
92,616	-		GFF6303	0.52	-0.5
92,616	-		GFF6303	0.52	-0.4
92,616	-		GFF6303	0.52	+1.9
92,754	-		GFF6303	0.67	-0.1
92,769	-		GFF6303	0.68	-0.5
93,212	-				-0.1
93,212	-				-0.2
93,379	+		GFF6304	0.25	+1.9
93,379	+		GFF6304	0.25	-0.9
93,379	+		GFF6304	0.25	-0.6
93,379	+		GFF6304	0.25	+0.5
93,379	+		GFF6304	0.25	-0.5
93,379	+		GFF6304	0.25	-0.0
93,379	+		GFF6304	0.25	+0.3
93,379	+		GFF6304	0.25	+0.1
93,379	+		GFF6304	0.25	-0.7
93,379	+		GFF6304	0.25	+0.5
93,379	+		GFF6304	0.25	+0.1
93,380	-		GFF6304	0.25	-0.6
93,380	-		GFF6304	0.25	+0.3
93,380	-		GFF6304	0.25	-0.0
93,380	-		GFF6304	0.25	+1.1
93,380	-		GFF6304	0.25	-0.1
93,380	-		GFF6304	0.25	-0.5
93,380	-		GFF6304	0.25	-0.0
93,380	-		GFF6304	0.25	-0.4
93,380	-		GFF6304	0.25	-0.6
93,505	+		GFF6304	0.38	+0.7
93,506	-		GFF6304	0.38	-2.3
93,598	+		GFF6304	0.47	-0.1
93,599	-		GFF6304	0.47	+0.2
93,599	-		GFF6304	0.47	+1.4
93,619	+		GFF6304	0.49	+0.3
93,619	+		GFF6304	0.49	-0.2
93,619	+		GFF6304	0.49	+0.4
93,619	+		GFF6304	0.49	+1.7
93,619	+		GFF6304	0.49	-1.9
93,620	-		GFF6304	0.50	-0.5
93,620	-		GFF6304	0.50	-0.2
93,620	-		GFF6304	0.50	-1.5
93,620	-		GFF6304	0.50	+0.2
93,628	+		GFF6304	0.50	-0.4
93,628	+		GFF6304	0.50	-1.3
93,628	+		GFF6304	0.50	-0.8
93,628	+		GFF6304	0.50	-0.6
93,629	-		GFF6304	0.51	+0.8
93,629	-		GFF6304	0.51	-0.5
93,629	-		GFF6304	0.51	-0.5
93,629	-		GFF6304	0.51	+0.2
93,629	-		GFF6304	0.51	-0.1
93,793	+		GFF6304	0.67	-0.5
93,793	+		GFF6304	0.67	+0.4
93,794	-		GFF6304	0.67	+0.4
93,794	-		GFF6304	0.67	+0.0
93,850	+		GFF6304	0.73	-0.0
93,851	-		GFF6304	0.73	-0.6
93,851	-		GFF6304	0.73	+0.5
93,865	+		GFF6304	0.75	+0.3
93,874	+		GFF6304	0.76	+0.1
93,875	-		GFF6304	0.76	+0.3
93,875	-		GFF6304	0.76	+0.4
93,875	-		GFF6304	0.76	-0.4
93,875	-		GFF6304	0.76	-0.1
94,021	+				-0.3
94,021	+				-0.5
94,021	+				-0.4
94,021	+				+0.6
94,021	+				+0.9
94,022	-				-0.4
94,022	-				-0.2
94,145	+				-0.1
94,145	+				+0.6
94,145	+				+1.5
94,146	-				-0.8
94,158	-				+0.2
94,169	+				+0.6
94,169	+				-1.0
94,169	+				-1.1
94,169	+				-1.5
94,169	+				-0.6
94,169	+				-0.3
94,170	-				+0.5
94,170	-				-0.8
94,170	-				+0.5
94,170	-				-0.8
94,170	-				-0.2
94,170	-				-0.0
94,179	+				-0.1
94,179	+				-0.6
94,179	+				-0.7
94,179	+				-0.2
94,179	+				-0.8
94,180	-				+0.5
94,180	-				+0.9
94,180	-				-1.3
94,180	-				-0.9
94,180	-				-1.9
94,212	+				+0.4
94,212	+				-0.0
94,212	+				-0.1
94,234	-				-0.5
94,234	-				-0.4
94,253	+				+0.9
94,275	+				-1.5
94,558	+		GFF6305	0.11	+0.3
94,585	+		GFF6305	0.12	-0.3
94,585	+		GFF6305	0.12	+0.2
94,586	-		GFF6305	0.12	-0.6
94,586	-		GFF6305	0.12	+0.6
94,693	+		GFF6305	0.17	-0.4
94,693	+		GFF6305	0.17	+0.3
94,693	+		GFF6305	0.17	-0.0
94,732	+		GFF6305	0.19	-0.3
94,732	+		GFF6305	0.19	+0.1
94,732	+		GFF6305	0.19	-0.7
94,733	-		GFF6305	0.19	-0.7
94,733	-		GFF6305	0.19	-0.5
94,744	+		GFF6305	0.20	+0.1
94,744	+		GFF6305	0.20	-0.9
94,745	-		GFF6305	0.20	-1.3
94,745	-		GFF6305	0.20	+0.4
94,745	-		GFF6305	0.20	+0.1
94,745	-		GFF6305	0.20	+0.7
94,795	+		GFF6305	0.22	-0.0
94,795	+		GFF6305	0.22	-1.1
94,795	+		GFF6305	0.22	+0.3
94,795	+		GFF6305	0.22	-0.6
94,795	+		GFF6305	0.22	-0.6
94,796	-		GFF6305	0.22	-0.0
94,796	-		GFF6305	0.22	-0.8
94,796	-		GFF6305	0.22	-0.9
94,796	-		GFF6305	0.22	+0.1
94,796	-		GFF6305	0.22	-0.7
94,796	-		GFF6305	0.22	-0.4
94,796	-		GFF6305	0.22	-0.1
94,796	-		GFF6305	0.22	-1.3
94,796	-		GFF6305	0.22	-0.8
94,796	-		GFF6305	0.22	+1.1
94,796	-		GFF6305	0.22	-0.2
94,796	-		GFF6305	0.22	-0.1
94,796	-		GFF6305	0.22	-0.3
94,796	-		GFF6305	0.22	+0.4
94,796	-		GFF6305	0.22	+0.0
94,975	+		GFF6305	0.30	+0.2