Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF627 and GFF628 are separated by 107 nucleotides GFF628 and GFF629 overlap by 4 nucleotides GFF629 and GFF630 are separated by 6 nucleotides GFF630 and GFF631 are separated by 16 nucleotides
GFF627 - Secretion protein HlyD, at 676,579 to 677,751
GFF627
GFF628 - hypothetical protein, at 677,859 to 678,527
GFF628
GFF629 - hypothetical protein, at 678,524 to 679,903
GFF629
GFF630 - CxxC_CXXC_SSSS domain protein, FmdB family, at 679,910 to 680,254
GFF630
GFF631 - Formamidase (EC 3.5.1.49), at 680,271 to 681,503
GFF631
Position (kb) 678
679
680 Strain fitness (log2 ratio) -2
-1
0
1 at 677.787 kb on + strand at 677.834 kb on + strand at 677.834 kb on + strand at 677.835 kb on - strand at 677.835 kb on - strand at 677.835 kb on - strand at 677.835 kb on - strand at 678.151 kb on - strand, within GFF628 at 678.235 kb on + strand, within GFF628 at 678.435 kb on + strand, within GFF628 at 678.435 kb on + strand, within GFF628 at 678.435 kb on + strand, within GFF628 at 678.435 kb on + strand, within GFF628 at 678.436 kb on - strand, within GFF628 at 678.436 kb on - strand, within GFF628 at 678.436 kb on - strand, within GFF628 at 678.436 kb on - strand, within GFF628 at 678.436 kb on - strand, within GFF628 at 678.504 kb on + strand at 678.893 kb on + strand, within GFF629 at 678.893 kb on + strand, within GFF629 at 678.894 kb on - strand, within GFF629 at 678.894 kb on - strand, within GFF629 at 680.244 kb on + strand at 680.244 kb on + strand at 680.245 kb on - strand at 680.474 kb on - strand, within GFF631 at 680.599 kb on + strand, within GFF631 at 680.599 kb on + strand, within GFF631 at 680.600 kb on - strand, within GFF631 at 680.600 kb on - strand, within GFF631 at 680.600 kb on - strand, within GFF631 at 680.647 kb on + strand, within GFF631 at 680.648 kb on - strand, within GFF631 at 680.648 kb on - strand, within GFF631 at 680.785 kb on + strand, within GFF631 at 680.785 kb on + strand, within GFF631
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 677,787 + -1.3 677,834 + +0.2 677,834 + +0.0 677,835 - -0.2 677,835 - -2.0 677,835 - -0.7 677,835 - -0.3 678,151 - GFF628 0.44 -1.4 678,235 + GFF628 0.56 -1.2 678,435 + GFF628 0.86 +0.4 678,435 + GFF628 0.86 +0.7 678,435 + GFF628 0.86 -0.2 678,435 + GFF628 0.86 +0.2 678,436 - GFF628 0.86 -0.4 678,436 - GFF628 0.86 -0.7 678,436 - GFF628 0.86 +0.3 678,436 - GFF628 0.86 -0.2 678,436 - GFF628 0.86 +1.6 678,504 + -0.9 678,893 + GFF629 0.27 -0.6 678,893 + GFF629 0.27 -1.3 678,894 - GFF629 0.27 -0.7 678,894 - GFF629 0.27 -0.9 680,244 + -0.1 680,244 + -2.1 680,245 - -0.3 680,474 - GFF631 0.16 -0.6 680,599 + GFF631 0.27 -0.6 680,599 + GFF631 0.27 -1.0 680,600 - GFF631 0.27 -0.8 680,600 - GFF631 0.27 -2.1 680,600 - GFF631 0.27 -0.5 680,647 + GFF631 0.30 -0.3 680,648 - GFF631 0.31 -1.0 680,648 - GFF631 0.31 -0.2 680,785 + GFF631 0.42 +1.2 680,785 + GFF631 0.42 +0.6
Or see this region's nucleotide sequence