Strain Fitness in Variovorax sp. SCN45 around GFF6236

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6235 and GFF6236 are separated by 390 nucleotidesGFF6236 and GFF6237 overlap by 1 nucleotides GFF6235 - hypothetical protein, at 23,581 to 25,701 GFF6235 GFF6236 - VgrG protein, at 26,092 to 28,746 GFF6236 GFF6237 - hypothetical protein, at 28,746 to 29,813 GFF6237 Position (kb) 26 27 28 29Strain fitness (log2 ratio) -1 0 1 2at 25.146 kb on - strand, within GFF6235at 25.178 kb on + strand, within GFF6235at 25.178 kb on + strand, within GFF6235at 25.179 kb on - strand, within GFF6235at 25.179 kb on - strand, within GFF6235at 25.179 kb on - strand, within GFF6235at 25.236 kb on + strand, within GFF6235at 25.236 kb on + strand, within GFF6235at 25.237 kb on - strand, within GFF6235at 25.237 kb on - strand, within GFF6235at 25.328 kb on + strand, within GFF6235at 25.328 kb on + strand, within GFF6235at 25.329 kb on - strand, within GFF6235at 25.335 kb on - strand, within GFF6235at 25.335 kb on - strand, within GFF6235at 25.475 kb on + strand, within GFF6235at 25.475 kb on + strand, within GFF6235at 25.511 kb on + strandat 25.850 kb on + strandat 25.883 kb on - strandat 25.883 kb on - strandat 25.889 kb on + strandat 25.895 kb on + strandat 26.025 kb on - strandat 26.035 kb on - strandat 26.344 kb on + strandat 26.344 kb on + strandat 26.345 kb on - strandat 26.345 kb on - strandat 26.345 kb on - strandat 26.345 kb on - strandat 26.488 kb on + strand, within GFF6236at 26.489 kb on - strand, within GFF6236at 26.489 kb on - strand, within GFF6236at 26.503 kb on + strand, within GFF6236at 26.503 kb on + strand, within GFF6236at 26.504 kb on - strand, within GFF6236at 26.515 kb on + strand, within GFF6236at 26.549 kb on + strand, within GFF6236at 26.550 kb on - strand, within GFF6236at 26.860 kb on + strand, within GFF6236at 27.037 kb on + strand, within GFF6236at 27.037 kb on + strand, within GFF6236at 27.038 kb on - strand, within GFF6236at 27.058 kb on + strand, within GFF6236at 27.059 kb on - strand, within GFF6236at 27.253 kb on + strand, within GFF6236at 27.626 kb on + strand, within GFF6236at 27.626 kb on + strand, within GFF6236at 27.627 kb on - strand, within GFF6236at 27.627 kb on - strand, within GFF6236at 27.627 kb on - strand, within GFF6236at 28.069 kb on - strand, within GFF6236at 28.447 kb on + strand, within GFF6236at 28.448 kb on - strand, within GFF6236at 28.487 kb on - strandat 28.487 kb on - strandat 28.493 kb on - strandat 28.578 kb on - strandat 28.578 kb on - strandat 28.578 kb on - strandat 28.578 kb on - strandat 28.598 kb on - strandat 28.598 kb on - strandat 28.598 kb on - strandat 28.695 kb on - strandat 28.745 kb on - strandat 28.745 kb on - strandat 28.754 kb on - strandat 28.836 kb on + strandat 28.837 kb on - strandat 28.837 kb on - strandat 28.837 kb on - strandat 29.355 kb on + strand, within GFF6237at 29.356 kb on - strand, within GFF6237at 29.381 kb on - strand, within GFF6237at 29.419 kb on - strand, within GFF6237at 29.419 kb on - strand, within GFF6237at 29.419 kb on - strand, within GFF6237at 29.430 kb on + strand, within GFF6237at 29.437 kb on - strand, within GFF6237at 29.478 kb on + strand, within GFF6237at 29.507 kb on + strand, within GFF6237at 29.507 kb on + strand, within GFF6237at 29.572 kb on - strand, within GFF6237at 29.572 kb on - strand, within GFF6237

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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25,146 - GFF6235 0.74 -0.3
25,178 + GFF6235 0.75 +0.1
25,178 + GFF6235 0.75 +0.9
25,179 - GFF6235 0.75 -0.2
25,179 - GFF6235 0.75 -0.7
25,179 - GFF6235 0.75 -0.5
25,236 + GFF6235 0.78 -0.1
25,236 + GFF6235 0.78 +0.0
25,237 - GFF6235 0.78 -0.5
25,237 - GFF6235 0.78 -0.7
25,328 + GFF6235 0.82 +0.3
25,328 + GFF6235 0.82 +0.2
25,329 - GFF6235 0.82 +0.2
25,335 - GFF6235 0.83 +1.2
25,335 - GFF6235 0.83 -0.8
25,475 + GFF6235 0.89 -0.1
25,475 + GFF6235 0.89 -1.7
25,511 + -0.2
25,850 + -0.5
25,883 - +0.8
25,883 - -0.0
25,889 + +0.5
25,895 + +0.3
26,025 - +0.1
26,035 - -0.9
26,344 + -0.6
26,344 + -0.2
26,345 - -0.3
26,345 - -0.1
26,345 - -0.3
26,345 - -0.1
26,488 + GFF6236 0.15 -0.3
26,489 - GFF6236 0.15 -0.3
26,489 - GFF6236 0.15 +0.8
26,503 + GFF6236 0.15 -0.5
26,503 + GFF6236 0.15 -0.3
26,504 - GFF6236 0.16 +0.1
26,515 + GFF6236 0.16 +0.1
26,549 + GFF6236 0.17 +0.1
26,550 - GFF6236 0.17 +0.1
26,860 + GFF6236 0.29 +0.9
27,037 + GFF6236 0.36 +0.9
27,037 + GFF6236 0.36 +1.9
27,038 - GFF6236 0.36 +0.9
27,058 + GFF6236 0.36 -0.4
27,059 - GFF6236 0.36 +0.5
27,253 + GFF6236 0.44 +0.3
27,626 + GFF6236 0.58 +0.4
27,626 + GFF6236 0.58 -0.5
27,627 - GFF6236 0.58 -0.2
27,627 - GFF6236 0.58 +0.4
27,627 - GFF6236 0.58 -1.0
28,069 - GFF6236 0.74 +0.7
28,447 + GFF6236 0.89 +0.1
28,448 - GFF6236 0.89 +0.7
28,487 - +0.8
28,487 - -0.7
28,493 - -1.5
28,578 - +1.6
28,578 - -0.2
28,578 - +0.1
28,578 - -0.9
28,598 - +1.0
28,598 - -0.1
28,598 - +2.2
28,695 - +0.3
28,745 - -0.5
28,745 - -1.4
28,754 - -0.9
28,836 + -0.4
28,837 - -0.1
28,837 - -0.6
28,837 - +1.9
29,355 + GFF6237 0.57 +1.3
29,356 - GFF6237 0.57 -0.4
29,381 - GFF6237 0.59 +0.6
29,419 - GFF6237 0.63 -1.1
29,419 - GFF6237 0.63 -1.4
29,419 - GFF6237 0.63 +0.3
29,430 + GFF6237 0.64 -0.8
29,437 - GFF6237 0.65 -0.1
29,478 + GFF6237 0.69 -0.7
29,507 + GFF6237 0.71 -0.5
29,507 + GFF6237 0.71 -0.0
29,572 - GFF6237 0.77 -1.1
29,572 - GFF6237 0.77 -1.1

Or see this region's nucleotide sequence