Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6130 and GFF6131 are separated by 141 nucleotides GFF6131 and GFF6132 overlap by 4 nucleotides GFF6132 and GFF6133 overlap by 4 nucleotides
GFF6130 - 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7), at 30,719 to 32,572
GFF6130
GFF6131 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 32,714 to 33,445
GFF6131
GFF6132 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 33,442 to 34,245
GFF6132
GFF6133 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 34,242 to 35,105
GFF6133
Position (kb) 32
33
34 Strain fitness (log2 ratio) -2
-1
0
1
2 at 32.702 kb on + strand at 32.703 kb on - strand at 32.727 kb on + strand at 32.728 kb on - strand at 32.805 kb on + strand, within GFF6131 at 32.805 kb on + strand, within GFF6131 at 32.805 kb on + strand, within GFF6131 at 32.805 kb on + strand, within GFF6131 at 32.805 kb on + strand, within GFF6131 at 32.805 kb on + strand, within GFF6131 at 32.806 kb on - strand, within GFF6131 at 32.806 kb on - strand, within GFF6131 at 32.806 kb on - strand, within GFF6131 at 32.806 kb on - strand, within GFF6131 at 32.806 kb on - strand, within GFF6131 at 32.806 kb on - strand, within GFF6131 at 33.066 kb on + strand, within GFF6131 at 33.066 kb on + strand, within GFF6131 at 33.066 kb on + strand, within GFF6131 at 33.066 kb on + strand, within GFF6131 at 33.066 kb on + strand, within GFF6131 at 33.066 kb on + strand, within GFF6131 at 33.066 kb on + strand, within GFF6131 at 33.066 kb on + strand, within GFF6131 at 33.066 kb on + strand, within GFF6131 at 33.067 kb on - strand, within GFF6131 at 33.067 kb on - strand, within GFF6131 at 33.067 kb on - strand, within GFF6131 at 33.067 kb on - strand, within GFF6131 at 33.067 kb on - strand, within GFF6131 at 33.067 kb on - strand, within GFF6131 at 33.067 kb on - strand, within GFF6131 at 33.067 kb on - strand, within GFF6131 at 33.117 kb on + strand, within GFF6131 at 33.118 kb on - strand, within GFF6131 at 33.494 kb on + strand at 33.495 kb on - strand at 33.777 kb on - strand, within GFF6132
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 32,702 + -1.3 32,703 - +2.7 32,727 + +0.5 32,728 - -0.4 32,805 + GFF6131 0.12 -2.2 32,805 + GFF6131 0.12 -0.1 32,805 + GFF6131 0.12 -1.1 32,805 + GFF6131 0.12 +0.0 32,805 + GFF6131 0.12 -1.6 32,805 + GFF6131 0.12 +0.6 32,806 - GFF6131 0.13 -0.0 32,806 - GFF6131 0.13 -0.5 32,806 - GFF6131 0.13 +0.3 32,806 - GFF6131 0.13 -1.3 32,806 - GFF6131 0.13 -0.3 32,806 - GFF6131 0.13 +0.8 33,066 + GFF6131 0.48 -0.0 33,066 + GFF6131 0.48 -0.3 33,066 + GFF6131 0.48 -0.2 33,066 + GFF6131 0.48 -0.3 33,066 + GFF6131 0.48 -0.9 33,066 + GFF6131 0.48 +2.3 33,066 + GFF6131 0.48 -1.2 33,066 + GFF6131 0.48 -0.1 33,066 + GFF6131 0.48 +0.4 33,067 - GFF6131 0.48 +0.1 33,067 - GFF6131 0.48 -0.6 33,067 - GFF6131 0.48 -0.1 33,067 - GFF6131 0.48 -0.4 33,067 - GFF6131 0.48 +0.3 33,067 - GFF6131 0.48 +0.6 33,067 - GFF6131 0.48 +0.0 33,067 - GFF6131 0.48 +0.7 33,117 + GFF6131 0.55 +0.3 33,118 - GFF6131 0.55 -1.2 33,494 + -0.2 33,495 - -0.9 33,777 - GFF6132 0.42 +0.2
Or see this region's nucleotide sequence