Strain Fitness in Variovorax sp. SCN45 around GFF6130

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF6128 and GFF6129 overlap by 4 nucleotidesGFF6129 and GFF6130 are separated by 22 nucleotidesGFF6130 and GFF6131 are separated by 141 nucleotidesGFF6131 and GFF6132 overlap by 4 nucleotides GFF6128 - Exodeoxyribonuclease VII small subunit (EC 3.1.11.6), at 29,510 to 29,776 GFF6128 GFF6129 - (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10), at 29,773 to 30,696 GFF6129 GFF6130 - 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7), at 30,719 to 32,572 GFF6130 GFF6131 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 32,714 to 33,445 GFF6131 GFF6132 - ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 33,442 to 34,245 GFF6132 Position (kb) 30 31 32 33Strain fitness (log2 ratio) -2 -1 0 1 2at 30.550 kb on + strand, within GFF6129at 30.550 kb on + strand, within GFF6129at 30.550 kb on + strand, within GFF6129at 30.550 kb on + strand, within GFF6129at 30.550 kb on + strand, within GFF6129at 30.550 kb on + strand, within GFF6129at 30.550 kb on + strand, within GFF6129at 30.550 kb on + strand, within GFF6129at 30.550 kb on + strand, within GFF6129at 30.550 kb on + strand, within GFF6129at 30.550 kb on + strand, within GFF6129at 30.550 kb on + strand, within GFF6129at 30.551 kb on - strand, within GFF6129at 30.551 kb on - strand, within GFF6129at 30.551 kb on - strand, within GFF6129at 30.551 kb on - strand, within GFF6129at 30.551 kb on - strand, within GFF6129at 30.551 kb on - strand, within GFF6129at 30.551 kb on - strand, within GFF6129at 30.551 kb on - strand, within GFF6129at 30.551 kb on - strand, within GFF6129at 30.551 kb on - strand, within GFF6129at 30.551 kb on - strand, within GFF6129at 30.554 kb on + strand, within GFF6129at 30.555 kb on - strand, within GFF6129at 30.555 kb on - strand, within GFF6129at 32.702 kb on + strandat 32.703 kb on - strandat 32.727 kb on + strandat 32.728 kb on - strandat 32.805 kb on + strand, within GFF6131at 32.805 kb on + strand, within GFF6131at 32.805 kb on + strand, within GFF6131at 32.805 kb on + strand, within GFF6131at 32.805 kb on + strand, within GFF6131at 32.805 kb on + strand, within GFF6131at 32.806 kb on - strand, within GFF6131at 32.806 kb on - strand, within GFF6131at 32.806 kb on - strand, within GFF6131at 32.806 kb on - strand, within GFF6131at 32.806 kb on - strand, within GFF6131at 32.806 kb on - strand, within GFF6131at 33.066 kb on + strand, within GFF6131at 33.066 kb on + strand, within GFF6131at 33.066 kb on + strand, within GFF6131at 33.066 kb on + strand, within GFF6131at 33.066 kb on + strand, within GFF6131at 33.066 kb on + strand, within GFF6131at 33.066 kb on + strand, within GFF6131at 33.066 kb on + strand, within GFF6131at 33.066 kb on + strand, within GFF6131at 33.067 kb on - strand, within GFF6131at 33.067 kb on - strand, within GFF6131at 33.067 kb on - strand, within GFF6131at 33.067 kb on - strand, within GFF6131at 33.067 kb on - strand, within GFF6131at 33.067 kb on - strand, within GFF6131at 33.067 kb on - strand, within GFF6131at 33.067 kb on - strand, within GFF6131at 33.117 kb on + strand, within GFF6131at 33.118 kb on - strand, within GFF6131at 33.494 kb on + strandat 33.495 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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30,550 + GFF6129 0.84 +0.4
30,550 + GFF6129 0.84 +0.9
30,550 + GFF6129 0.84 -0.1
30,550 + GFF6129 0.84 -1.5
30,550 + GFF6129 0.84 -0.3
30,550 + GFF6129 0.84 +0.8
30,550 + GFF6129 0.84 -0.1
30,550 + GFF6129 0.84 -1.3
30,550 + GFF6129 0.84 +0.6
30,550 + GFF6129 0.84 +0.1
30,550 + GFF6129 0.84 -0.7
30,550 + GFF6129 0.84 -0.8
30,551 - GFF6129 0.84 +1.7
30,551 - GFF6129 0.84 -1.4
30,551 - GFF6129 0.84 -0.1
30,551 - GFF6129 0.84 -0.9
30,551 - GFF6129 0.84 -0.9
30,551 - GFF6129 0.84 -1.8
30,551 - GFF6129 0.84 +1.4
30,551 - GFF6129 0.84 -1.8
30,551 - GFF6129 0.84 +0.0
30,551 - GFF6129 0.84 -1.1
30,551 - GFF6129 0.84 -1.1
30,554 + GFF6129 0.85 -1.0
30,555 - GFF6129 0.85 +0.7
30,555 - GFF6129 0.85 -1.2
32,702 + -1.3
32,703 - +2.7
32,727 + +0.5
32,728 - -0.4
32,805 + GFF6131 0.12 -2.2
32,805 + GFF6131 0.12 -0.1
32,805 + GFF6131 0.12 -1.1
32,805 + GFF6131 0.12 +0.0
32,805 + GFF6131 0.12 -1.6
32,805 + GFF6131 0.12 +0.6
32,806 - GFF6131 0.13 -0.0
32,806 - GFF6131 0.13 -0.5
32,806 - GFF6131 0.13 +0.3
32,806 - GFF6131 0.13 -1.3
32,806 - GFF6131 0.13 -0.3
32,806 - GFF6131 0.13 +0.8
33,066 + GFF6131 0.48 -0.0
33,066 + GFF6131 0.48 -0.3
33,066 + GFF6131 0.48 -0.2
33,066 + GFF6131 0.48 -0.3
33,066 + GFF6131 0.48 -0.9
33,066 + GFF6131 0.48 +2.3
33,066 + GFF6131 0.48 -1.2
33,066 + GFF6131 0.48 -0.1
33,066 + GFF6131 0.48 +0.4
33,067 - GFF6131 0.48 +0.1
33,067 - GFF6131 0.48 -0.6
33,067 - GFF6131 0.48 -0.1
33,067 - GFF6131 0.48 -0.4
33,067 - GFF6131 0.48 +0.3
33,067 - GFF6131 0.48 +0.6
33,067 - GFF6131 0.48 +0.0
33,067 - GFF6131 0.48 +0.7
33,117 + GFF6131 0.55 +0.3
33,118 - GFF6131 0.55 -1.2
33,494 + -0.2
33,495 - -0.9

Or see this region's nucleotide sequence