Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5938 and GFF5939 are separated by 8 nucleotides GFF5939 and GFF5940 overlap by 8 nucleotides GFF5940 and GFF5941 are separated by 28 nucleotides GFF5941 and GFF5942 are separated by 49 nucleotides
GFF5938 - T6SS component TssF (ImpG/VasA), at 158,220 to 160,112
GFF5938
GFF5939 - T6SS lysozyme-like component TssE, at 160,121 to 160,636
GFF5939
GFF5940 - T6SS associated component TagJ (ImpE), at 160,629 to 161,453
GFF5940
GFF5941 - hypothetical protein, at 161,482 to 162,039
GFF5941
GFF5942 - hypothetical protein, at 162,089 to 164,233
GFF5942
Position (kb) 160
161
162 Strain fitness (log2 ratio) -2
-1
0
1 at 159.662 kb on - strand, within GFF5938 at 159.662 kb on - strand, within GFF5938 at 159.671 kb on - strand, within GFF5938 at 160.122 kb on + strand at 160.122 kb on + strand at 160.122 kb on + strand at 160.122 kb on + strand at 160.123 kb on - strand at 160.123 kb on - strand at 160.175 kb on + strand, within GFF5939 at 160.399 kb on + strand, within GFF5939 at 160.410 kb on + strand, within GFF5939 at 160.957 kb on + strand, within GFF5940 at 160.958 kb on - strand, within GFF5940 at 160.960 kb on + strand, within GFF5940 at 160.960 kb on + strand, within GFF5940 at 160.960 kb on + strand, within GFF5940 at 160.961 kb on - strand, within GFF5940 at 161.239 kb on + strand, within GFF5940 at 161.240 kb on - strand, within GFF5940 at 161.240 kb on - strand, within GFF5940 at 161.567 kb on + strand, within GFF5941 at 161.988 kb on - strand at 162.255 kb on + strand at 162.255 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 159,662 - GFF5938 0.76 -0.4 159,662 - GFF5938 0.76 -1.1 159,671 - GFF5938 0.77 -0.4 160,122 + +0.1 160,122 + -0.6 160,122 + -1.0 160,122 + -0.9 160,123 - -0.4 160,123 - -0.7 160,175 + GFF5939 0.10 -1.0 160,399 + GFF5939 0.54 +1.5 160,410 + GFF5939 0.56 +1.4 160,957 + GFF5940 0.40 -0.4 160,958 - GFF5940 0.40 +0.1 160,960 + GFF5940 0.40 +0.0 160,960 + GFF5940 0.40 +0.2 160,960 + GFF5940 0.40 -0.5 160,961 - GFF5940 0.40 -0.5 161,239 + GFF5940 0.74 -1.2 161,240 - GFF5940 0.74 -0.0 161,240 - GFF5940 0.74 +0.6 161,567 + GFF5941 0.15 -0.4 161,988 - -0.7 162,255 + -0.1 162,255 + -1.8
Or see this region's nucleotide sequence