Strain Fitness in Variovorax sp. SCN45 around GFF5895

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5893 and GFF5894 are separated by 5 nucleotidesGFF5894 and GFF5895 overlap by 4 nucleotidesGFF5895 and GFF5896 are separated by 2 nucleotides GFF5893 - Low-specificity L-threonine aldolase (EC 4.1.2.48), at 112,129 to 113,187 GFF5893 GFF5894 - Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85), at 113,193 to 113,777 GFF5894 GFF5895 - hypothetical protein, at 113,774 to 114,166 GFF5895 GFF5896 - Anthranilate synthase, aminase component (EC 4.1.3.27), at 114,169 to 115,671 GFF5896 Position (kb) 113 114 115Strain fitness (log2 ratio) -1 0 1 2at 112.943 kb on + strand, within GFF5893at 112.943 kb on + strand, within GFF5893at 112.943 kb on + strand, within GFF5893at 112.944 kb on - strand, within GFF5893at 112.944 kb on - strand, within GFF5893at 112.944 kb on - strand, within GFF5893at 112.944 kb on - strand, within GFF5893at 112.944 kb on - strand, within GFF5893at 113.752 kb on + strandat 113.753 kb on - strandat 113.753 kb on - strandat 113.753 kb on - strandat 113.961 kb on + strand, within GFF5895at 113.961 kb on + strand, within GFF5895at 113.989 kb on - strand, within GFF5895at 113.989 kb on - strand, within GFF5895at 113.989 kb on - strand, within GFF5895at 113.989 kb on - strand, within GFF5895at 113.989 kb on - strand, within GFF5895at 114.063 kb on + strand, within GFF5895at 114.064 kb on - strand, within GFF5895at 114.170 kb on + strandat 114.170 kb on + strandat 114.170 kb on + strandat 114.170 kb on + strandat 114.170 kb on + strandat 114.171 kb on - strandat 114.171 kb on - strandat 114.171 kb on - strandat 114.171 kb on - strandat 114.171 kb on - strandat 114.353 kb on + strand, within GFF5896at 114.354 kb on - strand, within GFF5896at 114.354 kb on - strand, within GFF5896at 114.362 kb on + strand, within GFF5896at 114.532 kb on - strand, within GFF5896at 114.833 kb on + strand, within GFF5896at 114.833 kb on + strand, within GFF5896at 114.833 kb on + strand, within GFF5896at 114.833 kb on + strand, within GFF5896at 114.833 kb on + strand, within GFF5896at 114.833 kb on + strand, within GFF5896at 114.833 kb on + strand, within GFF5896at 114.836 kb on + strand, within GFF5896at 114.836 kb on + strand, within GFF5896at 114.836 kb on + strand, within GFF5896at 114.836 kb on + strand, within GFF5896at 114.836 kb on + strand, within GFF5896at 114.836 kb on + strand, within GFF5896at 114.836 kb on + strand, within GFF5896at 114.837 kb on - strand, within GFF5896at 114.837 kb on - strand, within GFF5896at 114.837 kb on - strand, within GFF5896at 114.837 kb on - strand, within GFF5896at 114.837 kb on - strand, within GFF5896at 114.837 kb on - strand, within GFF5896at 114.837 kb on - strand, within GFF5896at 114.842 kb on + strand, within GFF5896at 114.842 kb on + strand, within GFF5896at 114.843 kb on - strand, within GFF5896at 114.843 kb on - strand, within GFF5896at 114.986 kb on + strand, within GFF5896at 115.134 kb on - strand, within GFF5896at 115.145 kb on + strand, within GFF5896at 115.146 kb on - strand, within GFF5896at 115.146 kb on - strand, within GFF5896

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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112,943 + GFF5893 0.77 +0.6
112,943 + GFF5893 0.77 -0.2
112,943 + GFF5893 0.77 +0.2
112,944 - GFF5893 0.77 -0.3
112,944 - GFF5893 0.77 -1.0
112,944 - GFF5893 0.77 -1.1
112,944 - GFF5893 0.77 +0.8
112,944 - GFF5893 0.77 -0.8
113,752 + -0.8
113,753 - -0.6
113,753 - -0.5
113,753 - -1.0
113,961 + GFF5895 0.48 +0.5
113,961 + GFF5895 0.48 +0.5
113,989 - GFF5895 0.55 +0.5
113,989 - GFF5895 0.55 +1.0
113,989 - GFF5895 0.55 -0.5
113,989 - GFF5895 0.55 -0.3
113,989 - GFF5895 0.55 +2.4
114,063 + GFF5895 0.74 +0.3
114,064 - GFF5895 0.74 -0.7
114,170 + -0.0
114,170 + -0.6
114,170 + +0.1
114,170 + -0.3
114,170 + -1.1
114,171 - +0.2
114,171 - -1.1
114,171 - -0.3
114,171 - +0.6
114,171 - -0.1
114,353 + GFF5896 0.12 -0.5
114,354 - GFF5896 0.12 +1.1
114,354 - GFF5896 0.12 -0.1
114,362 + GFF5896 0.13 -1.1
114,532 - GFF5896 0.24 -1.6
114,833 + GFF5896 0.44 +1.4
114,833 + GFF5896 0.44 -1.6
114,833 + GFF5896 0.44 -1.0
114,833 + GFF5896 0.44 -1.2
114,833 + GFF5896 0.44 +1.2
114,833 + GFF5896 0.44 -0.3
114,833 + GFF5896 0.44 +0.2
114,836 + GFF5896 0.44 -0.2
114,836 + GFF5896 0.44 -0.5
114,836 + GFF5896 0.44 -0.1
114,836 + GFF5896 0.44 -1.6
114,836 + GFF5896 0.44 -0.1
114,836 + GFF5896 0.44 +1.1
114,836 + GFF5896 0.44 +0.3
114,837 - GFF5896 0.44 -0.4
114,837 - GFF5896 0.44 -0.9
114,837 - GFF5896 0.44 +0.5
114,837 - GFF5896 0.44 -1.1
114,837 - GFF5896 0.44 +0.8
114,837 - GFF5896 0.44 -1.2
114,837 - GFF5896 0.44 +0.8
114,842 + GFF5896 0.45 -1.2
114,842 + GFF5896 0.45 +0.8
114,843 - GFF5896 0.45 +0.7
114,843 - GFF5896 0.45 +0.4
114,986 + GFF5896 0.54 -1.4
115,134 - GFF5896 0.64 -0.9
115,145 + GFF5896 0.65 +0.2
115,146 - GFF5896 0.65 -0.8
115,146 - GFF5896 0.65 -0.1

Or see this region's nucleotide sequence