Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5869 and GFF5870 are separated by 230 nucleotides GFF5870 and GFF5871 are separated by 10 nucleotides
GFF5869 - internalin, putative, at 74,550 to 82,649
GFF5869
GFF5870 - hypothetical protein, at 82,880 to 83,734
GFF5870
GFF5871 - hypothetical protein, at 83,745 to 86,036
GFF5871
Position (kb) 82
83
84 Strain fitness (log2 ratio) -2
-1
0
1
2 at 82.003 kb on + strand at 82.003 kb on + strand at 82.004 kb on - strand at 82.004 kb on - strand at 82.345 kb on + strand at 82.345 kb on + strand at 82.345 kb on + strand at 82.345 kb on + strand at 82.345 kb on + strand at 82.345 kb on + strand at 82.345 kb on + strand at 82.345 kb on + strand at 82.345 kb on + strand at 82.345 kb on + strand at 82.345 kb on + strand at 82.345 kb on + strand at 82.345 kb on + strand at 82.345 kb on + strand at 82.345 kb on + strand at 82.345 kb on + strand at 82.345 kb on + strand at 82.345 kb on + strand at 82.345 kb on + strand at 82.345 kb on + strand at 82.346 kb on - strand at 82.346 kb on - strand at 82.346 kb on - strand at 82.346 kb on - strand at 82.346 kb on - strand at 82.346 kb on - strand at 82.346 kb on - strand at 82.346 kb on - strand at 82.346 kb on - strand at 82.346 kb on - strand at 82.346 kb on - strand at 82.346 kb on - strand at 82.346 kb on - strand at 82.346 kb on - strand at 82.346 kb on - strand at 82.346 kb on - strand at 82.346 kb on - strand at 82.346 kb on - strand at 82.346 kb on - strand at 82.369 kb on + strand at 82.369 kb on + strand at 82.369 kb on + strand at 82.369 kb on + strand at 82.369 kb on + strand at 82.369 kb on + strand at 82.369 kb on + strand at 82.369 kb on + strand at 82.369 kb on + strand at 82.369 kb on + strand at 82.369 kb on + strand at 82.370 kb on - strand at 82.370 kb on - strand at 82.370 kb on - strand at 82.370 kb on - strand at 82.370 kb on - strand at 82.370 kb on - strand at 82.370 kb on - strand at 82.370 kb on - strand at 82.370 kb on - strand at 82.370 kb on - strand at 82.370 kb on - strand at 82.370 kb on - strand at 82.370 kb on - strand at 82.827 kb on - strand at 82.837 kb on + strand at 82.837 kb on + strand at 82.837 kb on + strand at 82.837 kb on + strand at 82.837 kb on + strand at 82.838 kb on - strand at 82.838 kb on - strand at 82.838 kb on - strand at 82.838 kb on - strand at 82.838 kb on - strand at 82.867 kb on + strand at 82.867 kb on + strand at 82.867 kb on + strand at 82.868 kb on - strand at 82.868 kb on - strand at 82.868 kb on - strand at 82.868 kb on - strand at 82.886 kb on + strand at 82.886 kb on + strand at 82.886 kb on + strand at 82.887 kb on - strand at 82.887 kb on - strand at 82.887 kb on - strand at 83.210 kb on + strand, within GFF5870 at 83.210 kb on + strand, within GFF5870 at 83.210 kb on + strand, within GFF5870 at 83.210 kb on + strand, within GFF5870 at 83.210 kb on + strand, within GFF5870 at 83.210 kb on + strand, within GFF5870 at 83.211 kb on - strand, within GFF5870 at 83.211 kb on - strand, within GFF5870 at 83.211 kb on - strand, within GFF5870 at 83.211 kb on - strand, within GFF5870 at 83.211 kb on - strand, within GFF5870 at 83.211 kb on - strand, within GFF5870 at 83.495 kb on + strand, within GFF5870 at 83.496 kb on - strand, within GFF5870 at 83.496 kb on - strand, within GFF5870 at 83.496 kb on - strand, within GFF5870 at 83.651 kb on + strand at 83.652 kb on - strand at 83.652 kb on - strand at 84.056 kb on + strand, within GFF5871 at 84.056 kb on + strand, within GFF5871 at 84.056 kb on + strand, within GFF5871 at 84.056 kb on + strand, within GFF5871 at 84.056 kb on + strand, within GFF5871 at 84.056 kb on + strand, within GFF5871 at 84.056 kb on + strand, within GFF5871 at 84.056 kb on + strand, within GFF5871 at 84.056 kb on + strand, within GFF5871 at 84.056 kb on + strand, within GFF5871 at 84.056 kb on + strand, within GFF5871 at 84.056 kb on + strand, within GFF5871 at 84.056 kb on + strand, within GFF5871 at 84.056 kb on + strand, within GFF5871 at 84.056 kb on + strand, within GFF5871 at 84.056 kb on + strand, within GFF5871 at 84.056 kb on + strand, within GFF5871 at 84.056 kb on + strand, within GFF5871 at 84.056 kb on + strand, within GFF5871 at 84.056 kb on + strand, within GFF5871 at 84.056 kb on + strand, within GFF5871 at 84.057 kb on - strand, within GFF5871 at 84.057 kb on - strand, within GFF5871 at 84.057 kb on - strand, within GFF5871 at 84.057 kb on - strand, within GFF5871 at 84.057 kb on - strand, within GFF5871 at 84.057 kb on - strand, within GFF5871 at 84.057 kb on - strand, within GFF5871 at 84.057 kb on - strand, within GFF5871 at 84.057 kb on - strand, within GFF5871 at 84.057 kb on - strand, within GFF5871 at 84.057 kb on - strand, within GFF5871 at 84.057 kb on - strand, within GFF5871 at 84.057 kb on - strand, within GFF5871 at 84.057 kb on - strand, within GFF5871 at 84.057 kb on - strand, within GFF5871 at 84.057 kb on - strand, within GFF5871 at 84.360 kb on + strand, within GFF5871 at 84.360 kb on + strand, within GFF5871 at 84.361 kb on - strand, within GFF5871 at 84.438 kb on + strand, within GFF5871 at 84.438 kb on + strand, within GFF5871 at 84.438 kb on + strand, within GFF5871 at 84.438 kb on + strand, within GFF5871 at 84.438 kb on + strand, within GFF5871 at 84.438 kb on + strand, within GFF5871 at 84.439 kb on - strand, within GFF5871 at 84.439 kb on - strand, within GFF5871 at 84.439 kb on - strand, within GFF5871 at 84.439 kb on - strand, within GFF5871 at 84.439 kb on - strand, within GFF5871 at 84.450 kb on + strand, within GFF5871 at 84.450 kb on + strand, within GFF5871 at 84.450 kb on + strand, within GFF5871 at 84.451 kb on - strand, within GFF5871 at 84.451 kb on - strand, within GFF5871 at 84.451 kb on - strand, within GFF5871 at 84.451 kb on - strand, within GFF5871 at 84.451 kb on - strand, within GFF5871 at 84.502 kb on - strand, within GFF5871 at 84.552 kb on + strand, within GFF5871 at 84.552 kb on + strand, within GFF5871 at 84.552 kb on + strand, within GFF5871 at 84.552 kb on + strand, within GFF5871 at 84.552 kb on + strand, within GFF5871 at 84.552 kb on + strand, within GFF5871 at 84.552 kb on + strand, within GFF5871 at 84.552 kb on + strand, within GFF5871 at 84.552 kb on + strand, within GFF5871 at 84.552 kb on + strand, within GFF5871 at 84.553 kb on - strand, within GFF5871 at 84.553 kb on - strand, within GFF5871 at 84.662 kb on + strand, within GFF5871 at 84.664 kb on - strand, within GFF5871
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 82,003 + +0.4 82,003 + -0.2 82,004 - +2.4 82,004 - +0.8 82,345 + +0.5 82,345 + -0.2 82,345 + +0.5 82,345 + +0.4 82,345 + +0.7 82,345 + +0.6 82,345 + +2.0 82,345 + +0.3 82,345 + -1.0 82,345 + -0.1 82,345 + +0.1 82,345 + +0.4 82,345 + +0.4 82,345 + -0.0 82,345 + +0.5 82,345 + +0.6 82,345 + +1.4 82,345 + +0.3 82,345 + +1.8 82,345 + +0.6 82,346 - +0.7 82,346 - +0.5 82,346 - +0.1 82,346 - -0.6 82,346 - -0.8 82,346 - +0.7 82,346 - +0.2 82,346 - +0.3 82,346 - +0.8 82,346 - +1.3 82,346 - +0.8 82,346 - +0.5 82,346 - +1.4 82,346 - +0.6 82,346 - +0.7 82,346 - +0.8 82,346 - +0.2 82,346 - +0.7 82,346 - +0.5 82,369 + -1.2 82,369 + +1.3 82,369 + +0.4 82,369 + +0.4 82,369 + +0.8 82,369 + +0.5 82,369 + +0.6 82,369 + +0.5 82,369 + +0.7 82,369 + +1.3 82,369 + +0.4 82,370 - +0.5 82,370 - +1.0 82,370 - +0.1 82,370 - +0.4 82,370 - +0.5 82,370 - +1.4 82,370 - +0.5 82,370 - -1.2 82,370 - -0.2 82,370 - +0.6 82,370 - +1.4 82,370 - +0.9 82,370 - +0.4 82,827 - +0.2 82,837 + +1.1 82,837 + -0.5 82,837 + +0.5 82,837 + +0.1 82,837 + -1.1 82,838 - +0.2 82,838 - +0.3 82,838 - +0.7 82,838 - +0.5 82,838 - +0.6 82,867 + +0.2 82,867 + +0.1 82,867 + +0.2 82,868 - -0.5 82,868 - -0.3 82,868 - +1.2 82,868 - -0.2 82,886 + +0.5 82,886 + +0.8 82,886 + -0.6 82,887 - +0.7 82,887 - +0.3 82,887 - -0.5 83,210 + GFF5870 0.39 +0.2 83,210 + GFF5870 0.39 +0.3 83,210 + GFF5870 0.39 +0.9 83,210 + GFF5870 0.39 +1.1 83,210 + GFF5870 0.39 +1.2 83,210 + GFF5870 0.39 -0.2 83,211 - GFF5870 0.39 +0.2 83,211 - GFF5870 0.39 +0.6 83,211 - GFF5870 0.39 +0.2 83,211 - GFF5870 0.39 -0.3 83,211 - GFF5870 0.39 -1.9 83,211 - GFF5870 0.39 +0.0 83,495 + GFF5870 0.72 +0.3 83,496 - GFF5870 0.72 +1.5 83,496 - GFF5870 0.72 -0.2 83,496 - GFF5870 0.72 +0.4 83,651 + +0.6 83,652 - +1.2 83,652 - +1.0 84,056 + GFF5871 0.14 +1.4 84,056 + GFF5871 0.14 +0.8 84,056 + GFF5871 0.14 -0.2 84,056 + GFF5871 0.14 -0.1 84,056 + GFF5871 0.14 +0.1 84,056 + GFF5871 0.14 +0.4 84,056 + GFF5871 0.14 -0.2 84,056 + GFF5871 0.14 +1.8 84,056 + GFF5871 0.14 +0.6 84,056 + GFF5871 0.14 +2.0 84,056 + GFF5871 0.14 -0.5 84,056 + GFF5871 0.14 -1.0 84,056 + GFF5871 0.14 +1.8 84,056 + GFF5871 0.14 +0.1 84,056 + GFF5871 0.14 -1.4 84,056 + GFF5871 0.14 +0.0 84,056 + GFF5871 0.14 -0.6 84,056 + GFF5871 0.14 +0.9 84,056 + GFF5871 0.14 +1.4 84,056 + GFF5871 0.14 +2.6 84,056 + GFF5871 0.14 +0.6 84,057 - GFF5871 0.14 +0.3 84,057 - GFF5871 0.14 -0.3 84,057 - GFF5871 0.14 -0.9 84,057 - GFF5871 0.14 +0.4 84,057 - GFF5871 0.14 +0.6 84,057 - GFF5871 0.14 +0.4 84,057 - GFF5871 0.14 +0.4 84,057 - GFF5871 0.14 +0.3 84,057 - GFF5871 0.14 +0.2 84,057 - GFF5871 0.14 -1.2 84,057 - GFF5871 0.14 +0.7 84,057 - GFF5871 0.14 +0.4 84,057 - GFF5871 0.14 +0.0 84,057 - GFF5871 0.14 +0.5 84,057 - GFF5871 0.14 +0.2 84,057 - GFF5871 0.14 +0.1 84,360 + GFF5871 0.27 +1.5 84,360 + GFF5871 0.27 -0.8 84,361 - GFF5871 0.27 -0.4 84,438 + GFF5871 0.30 +0.4 84,438 + GFF5871 0.30 +0.3 84,438 + GFF5871 0.30 +1.6 84,438 + GFF5871 0.30 -0.2 84,438 + GFF5871 0.30 +0.4 84,438 + GFF5871 0.30 +0.9 84,439 - GFF5871 0.30 -0.2 84,439 - GFF5871 0.30 +0.8 84,439 - GFF5871 0.30 +0.5 84,439 - GFF5871 0.30 +0.3 84,439 - GFF5871 0.30 +1.8 84,450 + GFF5871 0.31 +1.5 84,450 + GFF5871 0.31 +0.8 84,450 + GFF5871 0.31 +0.8 84,451 - GFF5871 0.31 +0.9 84,451 - GFF5871 0.31 +0.2 84,451 - GFF5871 0.31 +1.0 84,451 - GFF5871 0.31 +0.7 84,451 - GFF5871 0.31 +1.2 84,502 - GFF5871 0.33 +0.5 84,552 + GFF5871 0.35 -0.6 84,552 + GFF5871 0.35 -1.0 84,552 + GFF5871 0.35 +0.5 84,552 + GFF5871 0.35 +0.5 84,552 + GFF5871 0.35 -0.5 84,552 + GFF5871 0.35 +0.5 84,552 + GFF5871 0.35 +1.0 84,552 + GFF5871 0.35 +1.1 84,552 + GFF5871 0.35 +0.6 84,552 + GFF5871 0.35 +0.1 84,553 - GFF5871 0.35 +0.1 84,553 - GFF5871 0.35 +0.6 84,662 + GFF5871 0.40 +0.5 84,664 - GFF5871 0.40 +1.6
Or see this region's nucleotide sequence