Strain Fitness in Variovorax sp. SCN45 around GFF5830

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF5829 and GFF5830 are separated by 39 nucleotidesGFF5830 and GFF5831 are separated by 46 nucleotidesGFF5831 and GFF5832 are separated by 41 nucleotides GFF5829 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 4,933 to 6,201 GFF5829 GFF5830 - Aldehyde dehydrogenase (EC 1.2.1.3), at 6,241 to 7,743 GFF5830 GFF5831 - Ketosteroid isomerase-related protein, at 7,790 to 8,179 GFF5831 GFF5832 - MoaF protein precursor, at 8,221 to 9,027 GFF5832 Position (kb) 6 7 8Strain fitness (log2 ratio) -2 -1 0 1 2at 5.264 kb on + strand, within GFF5829at 5.264 kb on + strand, within GFF5829at 5.265 kb on - strand, within GFF5829at 5.265 kb on - strand, within GFF5829at 5.265 kb on - strand, within GFF5829at 5.265 kb on - strand, within GFF5829at 5.358 kb on - strand, within GFF5829at 5.390 kb on + strand, within GFF5829at 5.675 kb on + strand, within GFF5829at 5.675 kb on + strand, within GFF5829at 5.676 kb on - strand, within GFF5829at 5.690 kb on + strand, within GFF5829at 5.690 kb on + strand, within GFF5829at 5.691 kb on - strand, within GFF5829at 5.691 kb on - strand, within GFF5829at 5.691 kb on - strand, within GFF5829at 5.691 kb on - strand, within GFF5829at 5.691 kb on - strand, within GFF5829at 5.741 kb on + strand, within GFF5829at 5.741 kb on + strand, within GFF5829at 5.741 kb on + strand, within GFF5829at 5.742 kb on - strand, within GFF5829at 5.742 kb on - strand, within GFF5829at 5.742 kb on - strand, within GFF5829at 5.742 kb on - strand, within GFF5829at 5.810 kb on + strand, within GFF5829at 5.811 kb on - strand, within GFF5829at 5.896 kb on + strand, within GFF5829at 5.897 kb on - strand, within GFF5829at 5.897 kb on - strand, within GFF5829at 5.942 kb on + strand, within GFF5829at 5.942 kb on + strand, within GFF5829at 5.942 kb on + strand, within GFF5829at 5.943 kb on - strand, within GFF5829at 5.943 kb on - strand, within GFF5829at 5.943 kb on - strand, within GFF5829at 5.993 kb on + strand, within GFF5829at 5.994 kb on - strand, within GFF5829at 5.994 kb on - strand, within GFF5829at 7.268 kb on + strand, within GFF5830at 7.268 kb on + strand, within GFF5830at 7.268 kb on + strand, within GFF5830at 7.269 kb on - strand, within GFF5830at 7.269 kb on - strand, within GFF5830at 7.349 kb on + strand, within GFF5830at 7.350 kb on - strand, within GFF5830at 7.350 kb on - strand, within GFF5830at 7.475 kb on + strand, within GFF5830at 7.475 kb on + strand, within GFF5830at 7.475 kb on + strand, within GFF5830at 7.476 kb on - strand, within GFF5830at 7.476 kb on - strand, within GFF5830at 7.631 kb on + strandat 7.631 kb on + strandat 7.632 kb on - strandat 7.632 kb on - strandat 7.924 kb on - strand, within GFF5831at 7.924 kb on - strand, within GFF5831at 7.924 kb on - strand, within GFF5831at 8.145 kb on + strandat 8.146 kb on - strandat 8.146 kb on - strandat 8.250 kb on - strandat 8.408 kb on + strand, within GFF5832at 8.408 kb on + strand, within GFF5832at 8.408 kb on + strand, within GFF5832at 8.408 kb on + strand, within GFF5832at 8.409 kb on - strand, within GFF5832at 8.409 kb on - strand, within GFF5832at 8.409 kb on - strand, within GFF5832at 8.432 kb on + strand, within GFF5832at 8.432 kb on + strand, within GFF5832at 8.433 kb on - strand, within GFF5832at 8.510 kb on + strand, within GFF5832at 8.510 kb on + strand, within GFF5832at 8.510 kb on + strand, within GFF5832at 8.510 kb on + strand, within GFF5832at 8.511 kb on - strand, within GFF5832at 8.511 kb on - strand, within GFF5832at 8.511 kb on - strand, within GFF5832at 8.511 kb on - strand, within GFF5832at 8.511 kb on - strand, within GFF5832at 8.511 kb on - strand, within GFF5832at 8.522 kb on + strand, within GFF5832at 8.522 kb on + strand, within GFF5832at 8.522 kb on + strand, within GFF5832at 8.522 kb on + strand, within GFF5832at 8.522 kb on + strand, within GFF5832at 8.522 kb on + strand, within GFF5832at 8.522 kb on + strand, within GFF5832at 8.522 kb on + strand, within GFF5832at 8.523 kb on - strand, within GFF5832at 8.523 kb on - strand, within GFF5832at 8.523 kb on - strand, within GFF5832at 8.540 kb on + strand, within GFF5832at 8.540 kb on + strand, within GFF5832at 8.541 kb on - strand, within GFF5832

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
5,264 + GFF5829 0.26 -1.4
5,264 + GFF5829 0.26 -0.2
5,265 - GFF5829 0.26 -0.8
5,265 - GFF5829 0.26 -0.8
5,265 - GFF5829 0.26 -0.6
5,265 - GFF5829 0.26 -0.5
5,358 - GFF5829 0.33 -0.6
5,390 + GFF5829 0.36 -0.1
5,675 + GFF5829 0.58 +0.3
5,675 + GFF5829 0.58 +1.8
5,676 - GFF5829 0.59 -2.0
5,690 + GFF5829 0.60 +1.2
5,690 + GFF5829 0.60 +0.3
5,691 - GFF5829 0.60 -0.4
5,691 - GFF5829 0.60 -0.1
5,691 - GFF5829 0.60 -1.2
5,691 - GFF5829 0.60 +0.1
5,691 - GFF5829 0.60 +1.2
5,741 + GFF5829 0.64 -0.3
5,741 + GFF5829 0.64 +0.7
5,741 + GFF5829 0.64 +0.4
5,742 - GFF5829 0.64 +0.5
5,742 - GFF5829 0.64 +2.4
5,742 - GFF5829 0.64 -0.7
5,742 - GFF5829 0.64 -0.1
5,810 + GFF5829 0.69 +0.4
5,811 - GFF5829 0.69 +1.0
5,896 + GFF5829 0.76 -0.8
5,897 - GFF5829 0.76 +0.5
5,897 - GFF5829 0.76 -0.7
5,942 + GFF5829 0.80 -1.9
5,942 + GFF5829 0.80 +0.0
5,942 + GFF5829 0.80 +0.4
5,943 - GFF5829 0.80 -0.6
5,943 - GFF5829 0.80 +0.8
5,943 - GFF5829 0.80 -0.4
5,993 + GFF5829 0.84 -1.2
5,994 - GFF5829 0.84 +1.0
5,994 - GFF5829 0.84 +0.2
7,268 + GFF5830 0.68 -0.5
7,268 + GFF5830 0.68 +0.3
7,268 + GFF5830 0.68 +0.2
7,269 - GFF5830 0.68 -0.5
7,269 - GFF5830 0.68 +0.1
7,349 + GFF5830 0.74 +1.8
7,350 - GFF5830 0.74 -0.1
7,350 - GFF5830 0.74 +0.2
7,475 + GFF5830 0.82 -0.1
7,475 + GFF5830 0.82 -0.1
7,475 + GFF5830 0.82 -0.1
7,476 - GFF5830 0.82 -0.2
7,476 - GFF5830 0.82 +1.0
7,631 + -0.9
7,631 + -1.1
7,632 - +0.1
7,632 - -1.4
7,924 - GFF5831 0.34 -0.0
7,924 - GFF5831 0.34 +0.1
7,924 - GFF5831 0.34 +0.0
8,145 + -1.3
8,146 - -1.6
8,146 - -0.5
8,250 - -0.6
8,408 + GFF5832 0.23 +0.6
8,408 + GFF5832 0.23 -0.5
8,408 + GFF5832 0.23 +0.6
8,408 + GFF5832 0.23 +0.2
8,409 - GFF5832 0.23 -1.8
8,409 - GFF5832 0.23 +0.6
8,409 - GFF5832 0.23 +0.2
8,432 + GFF5832 0.26 +1.0
8,432 + GFF5832 0.26 -0.3
8,433 - GFF5832 0.26 -0.1
8,510 + GFF5832 0.36 -0.8
8,510 + GFF5832 0.36 -1.8
8,510 + GFF5832 0.36 -0.4
8,510 + GFF5832 0.36 +0.2
8,511 - GFF5832 0.36 -1.8
8,511 - GFF5832 0.36 -0.2
8,511 - GFF5832 0.36 -0.4
8,511 - GFF5832 0.36 -1.3
8,511 - GFF5832 0.36 -1.0
8,511 - GFF5832 0.36 -0.6
8,522 + GFF5832 0.37 -0.7
8,522 + GFF5832 0.37 +0.2
8,522 + GFF5832 0.37 -0.4
8,522 + GFF5832 0.37 -1.2
8,522 + GFF5832 0.37 +0.0
8,522 + GFF5832 0.37 -0.5
8,522 + GFF5832 0.37 -1.0
8,522 + GFF5832 0.37 -0.6
8,523 - GFF5832 0.37 -0.1
8,523 - GFF5832 0.37 -1.3
8,523 - GFF5832 0.37 -1.4
8,540 + GFF5832 0.40 -0.5
8,540 + GFF5832 0.40 -0.8
8,541 - GFF5832 0.40 +0.1

Or see this region's nucleotide sequence