Strain Fitness in Variovorax sp. SCN45 around GFF5783

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5782 and GFF5783 are separated by 1 nucleotidesGFF5783 and GFF5784 are separated by 28 nucleotidesGFF5784 and GFF5785 are separated by 177 nucleotides GFF5782 - BUG/TctC family periplasmic protein, at 157,038 to 158,072 GFF5782 GFF5783 - hypothetical protein, at 158,074 to 159,402 GFF5783 GFF5784 - hypothetical protein, at 159,431 to 159,832 GFF5784 GFF5785 - FIG00931285: hypothetical protein, at 160,010 to 161,425 GFF5785 Position (kb) 158 159 160Strain fitness (log2 ratio) -1 0 1at 157.419 kb on + strand, within GFF5782at 157.419 kb on + strand, within GFF5782at 157.419 kb on + strand, within GFF5782at 157.420 kb on - strand, within GFF5782at 157.420 kb on - strand, within GFF5782at 157.644 kb on + strand, within GFF5782at 157.644 kb on + strand, within GFF5782at 157.644 kb on + strand, within GFF5782at 157.645 kb on - strand, within GFF5782at 157.645 kb on - strand, within GFF5782at 157.645 kb on - strand, within GFF5782at 157.645 kb on - strand, within GFF5782at 157.645 kb on - strand, within GFF5782at 157.645 kb on - strand, within GFF5782at 157.645 kb on - strand, within GFF5782at 157.645 kb on - strand, within GFF5782at 157.645 kb on - strand, within GFF5782at 158.004 kb on + strandat 158.005 kb on - strandat 158.005 kb on - strandat 158.110 kb on - strandat 158.110 kb on - strandat 158.554 kb on + strand, within GFF5783at 158.554 kb on + strand, within GFF5783at 158.554 kb on + strand, within GFF5783at 158.555 kb on - strand, within GFF5783at 158.555 kb on - strand, within GFF5783at 158.555 kb on - strand, within GFF5783at 158.555 kb on - strand, within GFF5783at 159.118 kb on + strand, within GFF5783at 159.118 kb on + strand, within GFF5783at 159.119 kb on - strand, within GFF5783at 159.119 kb on - strand, within GFF5783at 159.119 kb on - strand, within GFF5783at 159.119 kb on - strand, within GFF5783at 159.119 kb on - strand, within GFF5783at 159.119 kb on - strand, within GFF5783at 159.119 kb on - strand, within GFF5783at 159.400 kb on + strandat 159.401 kb on - strandat 159.401 kb on - strandat 159.907 kb on + strandat 159.907 kb on + strandat 159.907 kb on + strandat 159.937 kb on + strandat 160.009 kb on + strandat 160.010 kb on - strandat 160.124 kb on + strandat 160.124 kb on + strandat 160.125 kb on - strandat 160.175 kb on + strand, within GFF5785at 160.175 kb on + strand, within GFF5785at 160.175 kb on + strand, within GFF5785at 160.175 kb on + strand, within GFF5785at 160.175 kb on + strand, within GFF5785at 160.175 kb on + strand, within GFF5785at 160.175 kb on + strand, within GFF5785at 160.175 kb on + strand, within GFF5785at 160.175 kb on + strand, within GFF5785at 160.175 kb on + strand, within GFF5785at 160.175 kb on + strand, within GFF5785at 160.176 kb on - strand, within GFF5785at 160.176 kb on - strand, within GFF5785at 160.176 kb on - strand, within GFF5785at 160.176 kb on - strand, within GFF5785at 160.176 kb on - strand, within GFF5785at 160.176 kb on - strand, within GFF5785at 160.176 kb on - strand, within GFF5785at 160.176 kb on - strand, within GFF5785at 160.256 kb on + strand, within GFF5785at 160.256 kb on + strand, within GFF5785at 160.256 kb on + strand, within GFF5785at 160.257 kb on - strand, within GFF5785at 160.268 kb on + strand, within GFF5785at 160.313 kb on + strand, within GFF5785

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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157,419 + GFF5782 0.37 -1.1
157,419 + GFF5782 0.37 -0.8
157,419 + GFF5782 0.37 -0.3
157,420 - GFF5782 0.37 +0.5
157,420 - GFF5782 0.37 -0.8
157,644 + GFF5782 0.59 -0.6
157,644 + GFF5782 0.59 +0.3
157,644 + GFF5782 0.59 -0.1
157,645 - GFF5782 0.59 +0.5
157,645 - GFF5782 0.59 +0.0
157,645 - GFF5782 0.59 -0.3
157,645 - GFF5782 0.59 +0.2
157,645 - GFF5782 0.59 +0.1
157,645 - GFF5782 0.59 +0.1
157,645 - GFF5782 0.59 +0.0
157,645 - GFF5782 0.59 -0.4
157,645 - GFF5782 0.59 -0.4
158,004 + -0.2
158,005 - +0.8
158,005 - -0.4
158,110 - -0.2
158,110 - -0.1
158,554 + GFF5783 0.36 -1.0
158,554 + GFF5783 0.36 -0.9
158,554 + GFF5783 0.36 -1.0
158,555 - GFF5783 0.36 +0.2
158,555 - GFF5783 0.36 -0.1
158,555 - GFF5783 0.36 -0.8
158,555 - GFF5783 0.36 +0.1
159,118 + GFF5783 0.79 -0.8
159,118 + GFF5783 0.79 +0.5
159,119 - GFF5783 0.79 +0.4
159,119 - GFF5783 0.79 -0.7
159,119 - GFF5783 0.79 -0.4
159,119 - GFF5783 0.79 +0.2
159,119 - GFF5783 0.79 +0.8
159,119 - GFF5783 0.79 -0.4
159,119 - GFF5783 0.79 -1.2
159,400 + -0.5
159,401 - +0.2
159,401 - -1.5
159,907 + +0.2
159,907 + +0.2
159,907 + -0.5
159,937 + -0.9
160,009 + +0.6
160,010 - +0.4
160,124 + -1.4
160,124 + -0.1
160,125 - -0.1
160,175 + GFF5785 0.12 +0.8
160,175 + GFF5785 0.12 -0.8
160,175 + GFF5785 0.12 +0.3
160,175 + GFF5785 0.12 -0.7
160,175 + GFF5785 0.12 -0.8
160,175 + GFF5785 0.12 -0.4
160,175 + GFF5785 0.12 -1.4
160,175 + GFF5785 0.12 -1.0
160,175 + GFF5785 0.12 +0.0
160,175 + GFF5785 0.12 -0.9
160,175 + GFF5785 0.12 -0.1
160,176 - GFF5785 0.12 +1.1
160,176 - GFF5785 0.12 -1.4
160,176 - GFF5785 0.12 +0.2
160,176 - GFF5785 0.12 -0.7
160,176 - GFF5785 0.12 -0.6
160,176 - GFF5785 0.12 +1.6
160,176 - GFF5785 0.12 -0.3
160,176 - GFF5785 0.12 -0.5
160,256 + GFF5785 0.17 -0.5
160,256 + GFF5785 0.17 +0.2
160,256 + GFF5785 0.17 +0.2
160,257 - GFF5785 0.17 -0.5
160,268 + GFF5785 0.18 +1.0
160,313 + GFF5785 0.21 -0.1

Or see this region's nucleotide sequence