Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5780 and GFF5781 are separated by 219 nucleotides GFF5781 and GFF5782 are separated by 143 nucleotides
GFF5780 - Positive regulator of L-idonate catabolism, at 154,765 to 155,775
GFF5780
GFF5781 - Transcriptional regulator, LysR family, at 155,995 to 156,894
GFF5781
GFF5782 - BUG/TctC family periplasmic protein, at 157,038 to 158,072
GFF5782
Position (kb) 155
156
157 Strain fitness (log2 ratio) -2
-1
0
1
2 at 155.108 kb on + strand, within GFF5780 at 155.486 kb on + strand, within GFF5780 at 155.639 kb on + strand, within GFF5780 at 155.639 kb on + strand, within GFF5780 at 155.639 kb on + strand, within GFF5780 at 155.640 kb on - strand, within GFF5780 at 155.640 kb on - strand, within GFF5780 at 155.640 kb on - strand, within GFF5780 at 155.640 kb on - strand, within GFF5780 at 155.640 kb on - strand, within GFF5780 at 155.640 kb on - strand, within GFF5780 at 155.640 kb on - strand, within GFF5780 at 155.640 kb on - strand, within GFF5780 at 155.974 kb on + strand at 155.974 kb on + strand at 155.975 kb on - strand at 155.975 kb on - strand at 155.975 kb on - strand at 155.975 kb on - strand at 155.975 kb on - strand at 156.527 kb on + strand, within GFF5781 at 156.527 kb on + strand, within GFF5781 at 156.528 kb on - strand, within GFF5781 at 156.528 kb on - strand, within GFF5781 at 156.528 kb on - strand, within GFF5781 at 156.680 kb on + strand, within GFF5781 at 156.680 kb on + strand, within GFF5781 at 156.681 kb on - strand, within GFF5781 at 156.681 kb on - strand, within GFF5781 at 156.957 kb on + strand at 156.958 kb on - strand at 156.958 kb on - strand at 156.958 kb on - strand at 156.984 kb on - strand at 156.984 kb on - strand at 156.998 kb on - strand at 157.030 kb on + strand at 157.030 kb on + strand at 157.030 kb on + strand at 157.031 kb on - strand at 157.031 kb on - strand at 157.031 kb on - strand at 157.031 kb on - strand at 157.031 kb on - strand at 157.031 kb on - strand at 157.031 kb on - strand at 157.031 kb on - strand at 157.031 kb on - strand at 157.031 kb on - strand at 157.031 kb on - strand at 157.031 kb on - strand at 157.031 kb on - strand at 157.419 kb on + strand, within GFF5782 at 157.419 kb on + strand, within GFF5782 at 157.419 kb on + strand, within GFF5782 at 157.420 kb on - strand, within GFF5782 at 157.420 kb on - strand, within GFF5782 at 157.644 kb on + strand, within GFF5782 at 157.644 kb on + strand, within GFF5782 at 157.644 kb on + strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 157.645 kb on - strand, within GFF5782 at 157.645 kb on - strand, within GFF5782
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 155,108 + GFF5780 0.34 -0.3 155,486 + GFF5780 0.71 -0.5 155,639 + GFF5780 0.86 +0.4 155,639 + GFF5780 0.86 +0.8 155,639 + GFF5780 0.86 -1.2 155,640 - GFF5780 0.87 -0.7 155,640 - GFF5780 0.87 -0.2 155,640 - GFF5780 0.87 -1.8 155,640 - GFF5780 0.87 -0.6 155,640 - GFF5780 0.87 -2.3 155,640 - GFF5780 0.87 +1.4 155,640 - GFF5780 0.87 -0.7 155,640 - GFF5780 0.87 -0.1 155,974 + -0.4 155,974 + -2.2 155,975 - -0.0 155,975 - +0.8 155,975 - +0.2 155,975 - +0.6 155,975 - -0.1 156,527 + GFF5781 0.59 -0.4 156,527 + GFF5781 0.59 -1.5 156,528 - GFF5781 0.59 -0.3 156,528 - GFF5781 0.59 +0.2 156,528 - GFF5781 0.59 -1.5 156,680 + GFF5781 0.76 -0.1 156,680 + GFF5781 0.76 -2.1 156,681 - GFF5781 0.76 -0.7 156,681 - GFF5781 0.76 -0.5 156,957 + -0.5 156,958 - +0.2 156,958 - +0.4 156,958 - -0.6 156,984 - -0.2 156,984 - -0.4 156,998 - -1.4 157,030 + +0.8 157,030 + -0.1 157,030 + +0.2 157,031 - -0.2 157,031 - -0.5 157,031 - -0.8 157,031 - -0.0 157,031 - -0.5 157,031 - +1.8 157,031 - -0.5 157,031 - +0.7 157,031 - -0.8 157,031 - -1.1 157,031 - -0.4 157,031 - -0.8 157,031 - -0.2 157,419 + GFF5782 0.37 -1.1 157,419 + GFF5782 0.37 -0.8 157,419 + GFF5782 0.37 -0.3 157,420 - GFF5782 0.37 +0.5 157,420 - GFF5782 0.37 -0.8 157,644 + GFF5782 0.59 -0.6 157,644 + GFF5782 0.59 +0.3 157,644 + GFF5782 0.59 -0.1 157,645 - GFF5782 0.59 +0.5 157,645 - GFF5782 0.59 +0.0 157,645 - GFF5782 0.59 -0.3 157,645 - GFF5782 0.59 +0.2 157,645 - GFF5782 0.59 +0.1 157,645 - GFF5782 0.59 +0.1 157,645 - GFF5782 0.59 +0.0 157,645 - GFF5782 0.59 -0.4 157,645 - GFF5782 0.59 -0.4
Or see this region's nucleotide sequence